Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47039 * 2 1 4 4 C 1.50698 * 109.47588 * 239.99778 * 2 1 3 5 5 H 1.07998 * 120.00126 * 240.00429 * 4 2 1 6 6 C 1.37878 * 119.99933 * 59.99792 * 4 2 1 7 7 N 1.31520 * 119.99710 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00408 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47463 * 89.99944 * 8 6 4 10 10 H 1.48498 * 109.47571 * 210.00219 * 8 6 4 11 11 H 1.48506 * 109.47122 * 330.00383 * 8 6 4 12 12 O 1.45200 * 109.46962 * 119.99902 * 2 1 3 13 13 C 1.34716 * 116.99962 * 269.99924 * 12 2 1 14 14 O 1.21464 * 119.99825 * 0.02562 * 13 12 2 15 15 C 1.47747 * 119.99777 * 180.02562 * 13 12 2 16 16 C 1.39663 * 120.11692 * 0.02562 * 15 13 12 17 17 C 1.37972 * 120.00077 * 179.97438 * 16 15 13 18 18 C 1.38252 * 120.22917 * 359.74419 * 17 16 15 19 19 C 1.38988 * 120.23190 * 0.51258 * 18 17 16 20 20 N 1.39715 * 119.99870 * 179.76679 * 19 18 17 21 21 C 1.46499 * 119.99845 * 179.72341 * 20 19 18 22 22 C 1.46498 * 120.00331 * 359.44911 * 20 19 18 23 23 C 1.38664 * 119.99843 * 359.48954 * 19 18 17 24 24 H 1.08997 * 109.47039 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47343 * 299.99983 * 1 2 3 26 26 H 1.08997 * 109.47171 * 60.00223 * 1 2 3 27 27 H 0.97003 * 119.99941 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.00209 * 0.02562 * 16 15 13 29 29 H 1.07996 * 119.88098 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.88430 * 180.25739 * 18 17 16 31 31 H 1.09004 * 109.47522 * 89.99945 * 21 20 19 32 32 H 1.09003 * 109.47296 * 210.00043 * 21 20 19 33 33 H 1.09004 * 109.47373 * 329.99733 * 21 20 19 34 34 H 1.09000 * 109.47295 * 90.00030 * 22 20 19 35 35 H 1.09003 * 109.46983 * 209.99998 * 22 20 19 36 36 H 1.09006 * 109.46582 * 329.99612 * 22 20 19 37 37 H 1.08003 * 120.11674 * 180.23481 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0078 9 1 1.3430 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 8 2.0139 -0.6845 1.1856 13 6 2.2178 0.0668 2.2851 14 8 1.9968 1.2607 2.2544 15 6 2.7101 -0.5617 3.5283 16 6 2.9654 -1.9343 3.5661 17 6 3.4256 -2.5186 4.7282 18 6 3.6407 -1.7491 5.8564 19 6 3.3847 -0.3832 5.8311 20 7 3.5992 0.3890 6.9755 21 6 3.3351 1.8297 6.9470 22 6 4.0823 -0.2429 8.2057 23 6 2.9220 0.2140 4.6683 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1613 -3.4844 28 1 2.8034 -2.5382 2.6855 29 1 3.6228 -3.5801 4.7551 30 1 4.0050 -2.2116 6.7618 31 1 2.3010 2.0155 7.2372 32 1 4.0043 2.3356 7.6430 33 1 3.5037 2.2102 5.9395 34 1 5.1722 -0.2320 8.2160 35 1 3.7053 0.3063 9.0685 36 1 3.7287 -1.2731 8.2479 37 1 2.7261 1.2758 4.6454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802083630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = -70.367763 kcal Electronic energy + Delta-G solvation = -19306.876467 eV Core-core repulsion = 16241.744369 eV Total energy + Delta-G solvation = -3065.132098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.49508 -40.23027 -37.63741 -37.03267 -35.33504 -32.53556 -31.68179 -30.95486 -29.13841 -27.48279 -25.72164 -25.46828 -23.00529 -22.31592 -21.11184 -19.23905 -18.55608 -18.05341 -17.00148 -16.84365 -16.64197 -16.39893 -16.17761 -15.93840 -15.00037 -14.77957 -14.65586 -14.28009 -13.96968 -13.51649 -13.41246 -13.22208 -13.15696 -13.01239 -12.94513 -12.80464 -12.50733 -12.41608 -12.16097 -12.03315 -11.62073 -11.43294 -11.02130 -10.87140 -10.61087 -10.01622 -8.29633 -8.27280 -6.47001 -0.24270 0.55206 1.41738 1.44773 1.55732 1.64764 1.88895 2.25576 2.42876 2.88923 3.01036 3.77518 3.89748 4.06759 4.21894 4.33022 4.39147 4.48673 4.52152 4.54417 4.67183 4.75971 4.79997 4.81136 4.84842 4.92676 4.97480 5.08807 5.20012 5.45637 5.46112 5.50959 5.59096 5.76552 5.87080 6.03182 6.28903 6.46319 6.57841 6.90718 7.24474 8.78635 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037567 B = 0.004070 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.149033 B = 6878.562322 C = 7312.686788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.265 1.265 12 O -0.353 6.353 13 C 0.489 3.511 14 O -0.554 6.554 15 C -0.095 4.095 16 C -0.130 4.130 17 C -0.074 4.074 18 C -0.157 4.157 19 C 0.198 3.802 20 N -0.643 5.643 21 C 0.086 3.914 22 C 0.089 3.911 23 C -0.155 4.155 24 H 0.047 0.953 25 H 0.020 0.980 26 H 0.083 0.917 27 H 0.272 0.728 28 H 0.130 0.870 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 -5.680 21.167 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.189 1.189 12 O -0.269 6.269 13 C 0.336 3.664 14 O -0.448 6.448 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.092 4.092 18 C -0.179 4.179 19 C 0.095 3.905 20 N -0.355 5.355 21 C -0.057 4.057 22 C -0.053 4.053 23 C -0.177 4.177 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.184 0.816 30 H 0.182 0.818 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.286 -5.092 21.165 22.659 hybrid contribution -0.177 0.543 -1.216 1.343 sum 6.109 -4.549 19.950 21.354 Atomic orbital electron populations 1.21988 0.96652 1.00521 1.00773 1.20414 0.92146 0.92122 0.79055 0.97621 1.21290 1.33561 1.13991 0.89781 0.91263 1.25884 0.94660 0.95657 1.02225 1.70029 1.36610 1.23662 1.25299 0.85121 0.79048 0.78079 0.76788 1.18993 1.20227 1.18892 1.86531 1.76131 1.43105 1.21150 1.22031 0.73956 0.85018 0.85374 1.90702 1.50774 1.17894 1.85403 1.18985 1.05063 0.95538 0.90089 1.21403 1.00737 0.92511 1.00383 1.21252 0.95894 1.01452 0.90632 1.21299 1.04798 0.91040 1.00731 1.17742 0.94621 0.91718 0.86399 1.46545 1.72189 1.07218 1.09585 1.21754 1.01376 0.79843 1.02680 1.21864 0.99362 0.99374 0.84696 1.20692 1.05481 0.99971 0.91601 0.93341 0.96073 0.89797 0.91919 0.85234 0.81577 0.81843 0.93052 0.88934 0.92854 0.92431 0.89806 0.90149 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.71 9.33 71.98 0.67 -7.04 16 2 C 0.22 12.58 2.56 29.85 0.08 12.66 16 3 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 4 C -0.55 -32.31 8.90 25.60 0.23 -32.08 16 5 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -54.08 11.32 21.45 0.24 -53.83 16 8 Si 0.99 43.69 29.54 68.60 2.03 45.72 16 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 O -0.35 -18.54 9.11 -56.25 -0.51 -19.06 16 13 C 0.49 23.74 7.87 70.34 0.55 24.29 16 14 O -0.55 -29.89 15.60 19.95 0.31 -29.58 16 15 C -0.10 -3.60 5.87 -20.11 -0.12 -3.72 16 16 C -0.13 -4.04 9.61 22.55 0.22 -3.83 16 17 C -0.07 -1.61 10.02 22.21 0.22 -1.39 16 18 C -0.16 -3.10 9.20 22.45 0.21 -2.90 16 19 C 0.20 4.90 6.55 38.17 0.25 5.15 16 20 N -0.64 -12.24 3.41 -747.39 -2.55 -14.79 16 21 C 0.09 1.50 10.18 127.77 1.30 2.81 16 22 C 0.09 0.94 10.18 127.77 1.30 2.24 16 23 C -0.15 -5.08 8.75 22.68 0.20 -4.88 16 24 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 4.82 6.07 -2.39 -0.01 4.81 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.13 4.16 7.61 -2.91 -0.02 4.14 16 29 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.16 1.97 6.14 -2.91 -0.02 1.95 16 31 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 33 H 0.05 1.14 6.19 -2.38 -0.01 1.12 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 36 H 0.08 0.67 6.21 -2.38 -0.01 0.65 16 37 H 0.12 4.20 5.73 -2.91 -0.02 4.19 16 Total: -1.00 -73.21 312.63 6.15 -67.06 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.07 Total: 11.83 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.56 Total: -7.36 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -2.31 Total: -68.62 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.20 Total: -48.63 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.21 6.15 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802083630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.304 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds