Wall clock time and date at job start Mon Mar 30 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 6 6 H 1.08005 * 119.99876 * 119.99791 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47151 * 90.00298 * 9 7 5 11 11 H 1.48507 * 109.47197 * 210.00055 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00226 * 9 7 5 13 13 O 1.45206 * 109.46989 * 295.00011 * 3 2 1 14 14 C 1.34672 * 117.00224 * 90.00249 * 13 3 2 15 15 O 1.21434 * 119.99542 * 359.97438 * 14 13 3 16 16 C 1.48061 * 120.00411 * 180.02562 * 14 13 3 17 17 C 1.39350 * 119.73201 * 179.72380 * 16 14 13 18 18 C 1.38583 * 119.05839 * 179.76749 * 17 16 14 19 19 C 1.50699 * 120.75563 * 180.24014 * 18 17 16 20 20 C 1.38624 * 118.49043 * 0.49438 * 18 17 16 21 21 C 1.38582 * 119.35760 * 359.75210 * 20 18 17 22 22 C 1.50704 * 119.54877 * 179.97438 * 21 20 18 23 23 N 1.31504 * 120.90946 * 359.97438 * 21 20 18 24 24 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 26 26 H 1.09000 * 109.47312 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.47011 * 239.99593 * 2 1 3 28 28 H 1.09000 * 109.46863 * 119.99909 * 2 1 3 29 29 H 0.96996 * 120.00180 * 180.02562 * 8 7 5 30 30 H 1.08005 * 120.46645 * 359.97438 * 17 16 14 31 31 H 1.09002 * 109.47342 * 270.26058 * 19 18 17 32 32 H 1.09001 * 109.47388 * 30.26290 * 19 18 17 33 33 H 1.09001 * 109.47100 * 150.25835 * 19 18 17 34 34 H 1.07999 * 120.32359 * 179.71806 * 20 18 17 35 35 H 1.08995 * 109.46678 * 270.01863 * 22 21 20 36 36 H 1.09005 * 109.46923 * 30.01242 * 22 21 20 37 37 H 1.08995 * 109.47604 * 150.01591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8802 1.3811 10 1 6.4428 2.1131 2.0836 11 1 6.4391 -0.3109 2.1546 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0916 -1.2408 14 6 0.4687 2.7275 -1.2561 15 8 -0.2267 2.7391 -0.2607 16 6 0.0110 3.4114 -2.4869 17 6 -1.2209 4.0627 -2.4983 18 6 -1.6334 4.7025 -3.6563 19 6 -2.9558 5.4231 -3.7093 20 6 -0.8042 4.6601 -4.7664 21 6 0.4056 3.9891 -4.6855 22 6 1.3101 3.9398 -5.8900 23 7 0.7754 3.3949 -3.5722 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9498 30 1 -1.8438 4.0716 -1.6160 31 1 -3.7339 4.7313 -4.0320 32 1 -3.1998 5.8082 -2.7192 33 1 -2.8904 6.2512 -4.4152 34 1 -1.0985 5.1447 -5.6856 35 1 1.0686 3.0624 -6.4899 36 1 1.1676 4.8396 -6.4884 37 1 2.3482 3.8816 -5.5628 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802218723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:07 Heat of formation + Delta-G solvation = -67.696155 kcal Electronic energy + Delta-G solvation = -19664.237459 eV Core-core repulsion = 16599.221211 eV Total energy + Delta-G solvation = -3065.016248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56107 -39.12506 -35.79671 -34.30816 -33.44446 -32.69766 -31.27485 -28.10725 -27.66416 -27.26044 -24.84883 -23.00716 -21.26039 -20.76234 -19.48569 -17.51565 -16.78245 -16.18902 -15.90590 -15.56832 -15.40572 -14.53135 -14.46286 -13.90116 -13.48953 -13.06018 -12.96550 -12.80683 -12.69917 -12.43567 -12.27762 -11.93101 -11.73118 -11.42696 -11.25794 -11.14273 -10.90551 -10.62461 -10.24540 -10.00097 -9.71512 -9.57427 -9.37201 -9.32721 -8.98761 -8.75344 -8.40999 -6.13903 -4.20137 0.69258 1.18556 2.94906 3.28263 3.32831 3.36473 3.48261 3.96426 4.23596 4.37901 4.45854 4.88267 4.90106 5.01879 5.18109 5.23496 5.31707 5.48450 5.55386 5.60036 5.61517 5.66936 5.97065 6.08944 6.16292 6.26175 6.33453 6.48088 6.60837 6.90330 6.98251 7.20050 7.24936 7.64699 7.76912 7.85883 8.00274 8.19905 8.65644 8.93584 9.44557 10.93105 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.005068 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.702964 B = 5523.022825 C = 6174.476907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.327 6.327 14 C 0.509 3.491 15 O -0.507 6.507 16 C 0.116 3.884 17 C -0.123 4.123 18 C -0.051 4.051 19 C -0.113 4.113 20 C -0.156 4.156 21 C 0.124 3.876 22 C -0.103 4.103 23 N -0.435 5.435 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.266 0.734 30 H 0.148 0.852 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 8.017 -13.634 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.065 0.935 5 C -0.556 4.556 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.242 6.242 14 C 0.351 3.649 15 O -0.397 6.397 16 C -0.021 4.021 17 C -0.143 4.143 18 C -0.059 4.059 19 C -0.170 4.170 20 C -0.176 4.176 21 C -0.016 4.016 22 C -0.160 4.160 23 N -0.148 5.148 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.140 7.432 -13.056 17.585 hybrid contribution 0.052 0.307 0.272 0.413 sum -9.088 7.740 -12.785 17.491 Atomic orbital electron populations 1.21866 0.98463 0.99056 1.00649 1.22022 0.92574 0.99294 1.03465 1.20776 0.95234 0.88865 0.78594 0.93460 1.21051 0.89595 1.38742 1.06209 0.91197 1.24873 0.99217 0.94767 0.95058 1.69890 1.35348 1.38021 1.09485 0.86281 0.83941 0.77624 0.78354 1.20442 1.20974 1.19550 1.86662 1.32639 1.61294 1.43575 1.20583 0.81489 0.76882 0.85956 1.90786 1.55842 1.58851 1.34214 1.20492 0.91904 0.97635 0.92099 1.21998 0.96148 0.96733 0.99402 1.20270 0.96801 0.96085 0.92770 1.20808 0.92896 0.99754 1.03540 1.22068 0.95099 1.01237 0.99178 1.21412 0.93355 0.93010 0.93861 1.20724 0.99521 1.02607 0.93170 1.67615 1.33062 1.15667 0.98418 0.94736 0.92762 0.95106 0.93847 0.87221 0.92441 0.83378 0.90393 0.90723 0.90921 0.84479 0.90267 0.90756 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.56 37.16 0.32 -2.93 16 2 C -0.14 -3.49 5.49 -26.73 -0.15 -3.63 16 3 C 0.22 6.01 2.25 -27.88 -0.06 5.95 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.96 8.90 -34.44 -0.31 -15.26 16 6 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.47 11.29 55.43 0.63 -24.84 16 9 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 13 O -0.33 -8.43 9.62 -40.42 -0.39 -8.82 16 14 C 0.51 11.63 6.40 34.76 0.22 11.85 16 15 O -0.51 -12.09 13.51 -19.22 -0.26 -12.35 16 16 C 0.12 2.18 6.75 -83.02 -0.56 1.62 16 17 C -0.12 -1.84 9.34 -39.04 -0.36 -2.21 16 18 C -0.05 -0.60 5.91 -104.35 -0.62 -1.22 16 19 C -0.11 -0.87 10.06 36.00 0.36 -0.51 16 20 C -0.16 -1.72 9.45 -39.31 -0.37 -2.09 16 21 C 0.12 1.69 6.78 -82.60 -0.56 1.13 16 22 C -0.10 -1.03 10.17 36.01 0.37 -0.67 16 23 N -0.43 -7.90 10.03 -6.07 -0.06 -7.96 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 1.27 7.79 -51.93 -0.40 0.86 16 26 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 27 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 3.01 5.95 -51.93 -0.31 2.71 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.15 2.11 7.64 -52.48 -0.40 1.70 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -32.15 314.43 -7.32 -39.48 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.14 Total: -0.40 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.81 Total: -6.30 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.57 Total: -32.81 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.65 Total: -21.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.15 -7.32 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802218723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.217 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds