Wall clock time and date at job start Mon Mar 30 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 6 6 H 1.08005 * 119.99876 * 119.99791 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47151 * 90.00298 * 9 7 5 11 11 H 1.48507 * 109.47197 * 210.00055 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00226 * 9 7 5 13 13 O 1.45206 * 109.46989 * 295.00011 * 3 2 1 14 14 C 1.34672 * 117.00224 * 90.00249 * 13 3 2 15 15 O 1.21434 * 119.99542 * 359.97438 * 14 13 3 16 16 C 1.48061 * 120.00411 * 180.02562 * 14 13 3 17 17 C 1.39350 * 119.73201 * 179.72380 * 16 14 13 18 18 C 1.38583 * 119.05839 * 179.76749 * 17 16 14 19 19 C 1.50699 * 120.75563 * 180.24014 * 18 17 16 20 20 C 1.38624 * 118.49043 * 0.49438 * 18 17 16 21 21 C 1.38582 * 119.35760 * 359.75210 * 20 18 17 22 22 C 1.50704 * 119.54877 * 179.97438 * 21 20 18 23 23 N 1.31504 * 120.90946 * 359.97438 * 21 20 18 24 24 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 26 26 H 1.09000 * 109.47312 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.47011 * 239.99593 * 2 1 3 28 28 H 1.09000 * 109.46863 * 119.99909 * 2 1 3 29 29 H 0.96996 * 120.00180 * 180.02562 * 8 7 5 30 30 H 1.08005 * 120.46645 * 359.97438 * 17 16 14 31 31 H 1.09002 * 109.47342 * 270.26058 * 19 18 17 32 32 H 1.09001 * 109.47388 * 30.26290 * 19 18 17 33 33 H 1.09001 * 109.47100 * 150.25835 * 19 18 17 34 34 H 1.07999 * 120.32359 * 179.71806 * 20 18 17 35 35 H 1.08995 * 109.46678 * 270.01863 * 22 21 20 36 36 H 1.09005 * 109.46923 * 30.01242 * 22 21 20 37 37 H 1.08995 * 109.47604 * 150.01591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8802 1.3811 10 1 6.4428 2.1131 2.0836 11 1 6.4391 -0.3109 2.1546 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0916 -1.2408 14 6 0.4687 2.7275 -1.2561 15 8 -0.2267 2.7391 -0.2607 16 6 0.0110 3.4114 -2.4869 17 6 -1.2209 4.0627 -2.4983 18 6 -1.6334 4.7025 -3.6563 19 6 -2.9558 5.4231 -3.7093 20 6 -0.8042 4.6601 -4.7664 21 6 0.4056 3.9891 -4.6855 22 6 1.3101 3.9398 -5.8900 23 7 0.7754 3.3949 -3.5722 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0610 2.9498 30 1 -1.8438 4.0716 -1.6160 31 1 -3.7339 4.7313 -4.0320 32 1 -3.1998 5.8082 -2.7192 33 1 -2.8904 6.2512 -4.4152 34 1 -1.0985 5.1447 -5.6856 35 1 1.0686 3.0624 -6.4899 36 1 1.1676 4.8396 -6.4884 37 1 2.3482 3.8816 -5.5628 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802218723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:07 Heat of formation + Delta-G solvation = -87.140037 kcal Electronic energy + Delta-G solvation = -19665.080609 eV Core-core repulsion = 16599.221211 eV Total energy + Delta-G solvation = -3065.859398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.89614 -40.75818 -37.72133 -35.60969 -35.16006 -33.89679 -33.28878 -29.45215 -29.06497 -28.35917 -26.37083 -24.97226 -22.52737 -22.23009 -21.35742 -19.18423 -18.67450 -17.63910 -17.40142 -17.14903 -16.89477 -16.46420 -15.61975 -15.12636 -14.85223 -14.69707 -14.12371 -14.08312 -13.79701 -13.50117 -13.38522 -13.34840 -13.19782 -13.06393 -13.02339 -12.83488 -12.65195 -12.53431 -12.15616 -11.84138 -11.68753 -11.44215 -10.86708 -10.59448 -10.56276 -10.52973 -10.08694 -8.29590 -6.46530 -0.52604 0.16439 1.39210 1.41774 1.43408 1.53511 1.83680 2.38092 2.70126 2.99421 3.12212 3.62187 3.76312 3.89687 3.97241 4.30609 4.32396 4.34169 4.47928 4.50757 4.61901 4.70194 4.77342 4.80688 4.84008 4.97613 5.02782 5.12982 5.16348 5.21709 5.27355 5.31294 5.47291 5.61684 5.64956 5.86901 6.05273 6.53138 6.72262 6.99531 7.24370 8.77629 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.005068 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.702964 B = 5523.022825 C = 6174.476907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.982 3.018 10 H -0.271 1.271 11 H -0.271 1.271 12 H -0.266 1.266 13 O -0.344 6.344 14 C 0.502 3.498 15 O -0.530 6.530 16 C 0.075 3.925 17 C -0.124 4.124 18 C -0.045 4.045 19 C -0.111 4.111 20 C -0.131 4.131 21 C 0.111 3.889 22 C -0.101 4.101 23 N -0.480 5.480 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.029 0.971 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.272 0.728 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.190 0.810 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 9.277 -16.185 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.027 0.973 5 C -0.590 4.590 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.805 3.195 10 H -0.196 1.196 11 H -0.195 1.195 12 H -0.190 1.190 13 O -0.259 6.259 14 C 0.346 3.654 15 O -0.421 6.421 16 C -0.060 4.060 17 C -0.144 4.144 18 C -0.052 4.052 19 C -0.167 4.167 20 C -0.150 4.150 21 C -0.030 4.030 22 C -0.158 4.158 23 N -0.193 5.193 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.207 0.793 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.016 8.697 -15.607 20.482 hybrid contribution 0.216 0.012 0.951 0.975 sum -9.800 8.709 -14.655 19.664 Atomic orbital electron populations 1.21710 0.96231 1.00778 0.99918 1.21866 0.94539 0.97887 1.02359 1.20511 0.94838 0.89476 0.78392 0.97271 1.21286 0.90361 1.40296 1.07014 0.92154 1.25791 1.04394 0.93641 0.94147 1.69998 1.37489 1.37767 1.09796 0.85197 0.77458 0.78216 0.78619 1.19638 1.19544 1.19021 1.86646 1.34689 1.62199 1.42414 1.21447 0.80165 0.76178 0.87587 1.90738 1.56022 1.59741 1.35581 1.20081 0.94033 1.00659 0.91178 1.22122 0.94636 0.96617 1.01072 1.20775 0.98425 0.94716 0.91308 1.20934 0.90565 1.00471 1.04713 1.22622 0.93082 0.98681 1.00593 1.22133 0.95155 0.92436 0.93296 1.20859 0.97673 1.05118 0.92148 1.67463 1.34378 1.17854 0.99651 0.91616 0.94064 0.95212 0.93919 0.89029 0.91865 0.83521 0.88747 0.90540 0.88047 0.79329 0.88999 0.86860 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.05 8.56 71.98 0.62 -5.44 16 2 C -0.13 -6.92 5.49 30.59 0.17 -6.75 16 3 C 0.22 12.98 2.25 29.85 0.07 13.05 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -33.41 8.90 25.60 0.23 -33.18 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.16 5.29 84.65 0.45 1.60 16 8 N -0.91 -53.68 11.29 21.45 0.24 -53.43 16 9 Si 0.98 44.59 29.54 68.60 2.03 46.61 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 O -0.34 -18.97 9.62 -55.81 -0.54 -19.51 16 14 C 0.50 24.49 6.40 70.43 0.45 24.94 16 15 O -0.53 -27.01 13.51 20.05 0.27 -26.74 16 16 C 0.08 2.96 6.75 41.88 0.28 3.24 16 17 C -0.12 -3.71 9.34 22.62 0.21 -3.50 16 18 C -0.04 -0.90 5.91 -19.69 -0.12 -1.02 16 19 C -0.11 -1.21 10.06 71.24 0.72 -0.49 16 20 C -0.13 -2.34 9.45 22.44 0.21 -2.13 16 21 C 0.11 2.82 6.78 42.69 0.29 3.11 16 22 C -0.10 -1.77 10.17 71.24 0.72 -1.04 16 23 N -0.48 -17.80 10.03 -173.12 -1.74 -19.54 16 24 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 25 H 0.04 2.00 7.79 -2.39 -0.02 1.98 16 26 H 0.03 1.37 6.06 -2.39 -0.01 1.35 16 27 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.09 5.25 5.95 -2.39 -0.01 5.24 16 29 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.15 4.27 7.64 -2.91 -0.02 4.25 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.85 8.10 -2.39 -0.02 0.84 16 33 H 0.10 0.59 8.10 -2.39 -0.02 0.57 16 34 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.11 1.08 8.08 -2.38 -0.02 1.06 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.71 314.43 5.63 -70.09 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.06 Total: 10.13 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 4.30 Total: -7.61 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -1.49 Total: -72.97 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.27 Total: -46.25 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -75.71 5.63 -70.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802218723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.052 kcal (2) G-P(sol) polarization free energy of solvation -75.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds