Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34783 * 116.99765 * 270.00430 * 13 3 2 15 15 O 1.21552 * 119.99887 * 359.97438 * 14 13 3 16 16 C 1.47102 * 120.00040 * 179.97438 * 14 13 3 17 17 C 1.46742 * 127.02422 * 0.02562 * 16 14 13 18 18 C 1.34440 * 106.37610 * 179.97438 * 17 16 14 19 19 N 1.36427 * 109.08335 * 0.02562 * 18 17 16 20 20 H 0.97000 * 124.80557 * 180.02562 * 19 18 17 21 21 C 1.34623 * 110.38103 * 359.72320 * 19 18 17 22 22 C 1.50697 * 125.89762 * 180.30656 * 21 19 18 23 23 C 1.53003 * 117.49809 * 8.90999 * 22 21 19 24 24 C 1.53002 * 117.49880 * 300.25247 * 22 21 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 1.08005 * 126.81134 * 0.02562 * 17 16 14 32 32 H 1.07995 * 125.45476 * 179.97438 * 18 17 16 33 33 H 1.09005 * 115.55346 * 154.58044 * 22 21 19 34 34 H 1.08998 * 117.49710 * 0.02562 * 23 22 21 35 35 H 1.09003 * 117.49752 * 145.02432 * 23 22 21 36 36 H 1.08998 * 117.49897 * 214.98004 * 24 22 21 37 37 H 1.09002 * 117.49732 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 8 1.6559 2.0918 1.2407 14 6 0.4678 2.7281 1.2560 15 8 -0.2279 2.7403 0.2593 16 6 0.0131 3.4077 2.4788 17 6 0.7236 3.4902 3.7601 18 6 -0.0631 4.2037 4.5844 19 7 -1.1966 4.5655 3.9170 20 1 -1.9207 5.0868 4.2976 21 6 -1.1649 4.1020 2.6535 22 6 -2.2339 4.3048 1.6108 23 6 -3.3679 5.2772 1.9415 24 6 -3.6335 3.7698 1.9206 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 1.6876 3.0632 3.9942 32 1 0.1654 4.4502 5.6107 33 1 -1.8956 4.2595 0.5756 34 1 -3.3405 5.7706 2.9130 35 1 -3.7759 5.8714 1.1238 36 1 -4.2160 3.3730 1.0893 37 1 -3.7811 3.2717 2.8789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805929202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -26.660093 kcal Electronic energy + Delta-G solvation = -19902.230827 eV Core-core repulsion = 16838.994036 eV Total energy + Delta-G solvation = -3063.236791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16174 -38.91891 -36.89241 -35.43323 -33.32070 -31.34805 -30.77455 -29.03264 -27.17564 -24.05103 -22.83988 -22.56474 -21.99185 -20.45387 -19.77969 -18.75822 -17.76103 -16.51590 -16.03642 -15.46508 -14.99724 -14.90981 -14.39471 -14.20223 -13.98799 -13.07592 -12.90641 -12.71900 -12.29960 -11.89715 -11.83367 -11.73953 -11.32470 -11.15438 -11.02884 -10.87690 -10.79685 -10.51807 -10.49539 -10.17192 -9.65107 -9.39724 -9.18977 -8.68625 -8.64603 -8.34797 -7.98151 -6.09121 -4.14917 1.84802 2.60019 3.11289 3.29407 3.36200 3.41834 3.72848 4.07181 4.08437 4.43985 4.46740 4.73451 4.89555 5.08308 5.17088 5.22928 5.41780 5.63775 5.71091 5.80884 5.90345 6.00530 6.23013 6.34644 6.40001 6.46786 6.62185 6.88448 7.02319 7.04802 7.14190 7.31628 7.44404 7.47362 7.73577 7.87802 8.11087 8.30055 8.82824 9.11761 9.50317 10.97870 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.005134 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.830462 B = 5452.318089 C = 5965.332129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.516 4.516 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.351 6.351 14 C 0.528 3.472 15 O -0.528 6.528 16 C -0.200 4.200 17 C -0.140 4.140 18 C -0.031 4.031 19 N -0.551 5.551 20 H 0.412 0.588 21 C 0.128 3.872 22 C -0.086 4.086 23 C -0.184 4.184 24 C -0.165 4.165 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.107 0.893 30 H 0.264 0.736 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 7.848 11.612 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.267 6.267 14 C 0.374 3.626 15 O -0.420 6.420 16 C -0.209 4.209 17 C -0.164 4.164 18 C -0.158 4.158 19 N -0.147 5.147 20 H 0.248 0.752 21 C 0.011 3.989 22 C -0.105 4.105 23 C -0.221 4.221 24 C -0.202 4.202 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.568 7.784 11.212 17.892 hybrid contribution 0.639 0.112 0.033 0.649 sum -10.929 7.896 11.244 17.557 Atomic orbital electron populations 1.21846 0.98377 0.98738 1.00903 1.21999 0.92676 0.99474 1.03122 1.20615 0.94801 0.88713 0.78982 0.93594 1.21112 0.89889 1.38396 1.06055 0.91348 1.24876 0.99059 0.94924 0.95146 1.69912 1.35136 1.38210 1.09477 0.86263 0.84203 0.77785 0.78148 1.19507 1.20805 1.20846 1.86544 1.33933 1.62611 1.43571 1.19917 0.80482 0.76034 0.86144 1.90722 1.55952 1.59866 1.35469 1.19731 0.96815 1.09659 0.94670 1.22193 1.00427 1.01999 0.91799 1.21666 0.88514 1.06619 0.98972 1.41391 1.18694 1.44507 1.10142 0.75188 1.19487 0.95886 0.98578 0.84984 1.20852 0.86584 1.04170 0.98902 1.23025 1.03212 0.92980 1.02927 1.23026 0.97934 0.95723 1.03560 0.95109 0.92874 0.94705 0.94128 0.87529 0.92591 0.82979 0.81388 0.83689 0.89517 0.87819 0.87761 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.56 37.16 0.32 -2.94 16 2 C -0.13 -3.49 5.49 -26.73 -0.15 -3.63 16 3 C 0.22 6.13 2.25 -27.88 -0.06 6.07 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.89 8.90 -34.44 -0.31 -15.19 16 6 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.65 11.29 55.43 0.63 -25.02 16 9 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 O -0.35 -8.91 9.71 -40.72 -0.40 -9.31 16 14 C 0.53 12.09 6.40 34.33 0.22 12.31 16 15 O -0.53 -12.69 12.14 -19.31 -0.23 -12.93 16 16 C -0.20 -3.72 6.33 -103.01 -0.65 -4.37 16 17 C -0.14 -2.18 11.00 -37.49 -0.41 -2.59 16 18 C -0.03 -0.36 11.87 -16.85 -0.20 -0.56 16 19 N -0.55 -6.10 5.80 -8.88 -0.05 -6.15 16 20 H 0.41 3.03 7.85 -40.82 -0.32 2.71 16 21 C 0.13 1.90 6.73 -81.51 -0.55 1.35 16 22 C -0.09 -1.17 5.63 -91.77 -0.52 -1.68 16 23 C -0.18 -1.73 10.13 -26.69 -0.27 -2.00 16 24 C -0.17 -1.77 10.24 -26.69 -0.27 -2.04 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.27 7.79 -51.93 -0.40 0.86 16 27 H 0.03 0.79 6.06 -51.93 -0.31 0.47 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.15 2.29 8.06 -52.48 -0.42 1.87 16 32 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.15 2.33 6.69 -51.93 -0.35 1.98 16 34 H 0.09 0.64 7.09 -51.93 -0.37 0.27 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -32.43 310.16 -8.29 -40.72 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.94 Total: 5.20 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.95 Total: -13.64 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.57 Total: -31.17 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.63 Total: -22.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.43 -8.29 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805929202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.058 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds