Wall clock time and date at job start Mon Mar 30 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34783 * 116.99765 * 270.00430 * 13 3 2 15 15 O 1.21552 * 119.99887 * 359.97438 * 14 13 3 16 16 C 1.47102 * 120.00040 * 179.97438 * 14 13 3 17 17 C 1.46742 * 127.02422 * 0.02562 * 16 14 13 18 18 C 1.34440 * 106.37610 * 179.97438 * 17 16 14 19 19 N 1.36427 * 109.08335 * 0.02562 * 18 17 16 20 20 H 0.97000 * 124.80557 * 180.02562 * 19 18 17 21 21 C 1.34623 * 110.38103 * 359.72320 * 19 18 17 22 22 C 1.50697 * 125.89762 * 180.30656 * 21 19 18 23 23 C 1.53003 * 117.49809 * 8.90999 * 22 21 19 24 24 C 1.53002 * 117.49880 * 300.25247 * 22 21 19 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 1.08005 * 126.81134 * 0.02562 * 17 16 14 32 32 H 1.07995 * 125.45476 * 179.97438 * 18 17 16 33 33 H 1.09005 * 115.55346 * 154.58044 * 22 21 19 34 34 H 1.08998 * 117.49710 * 0.02562 * 23 22 21 35 35 H 1.09003 * 117.49752 * 145.02432 * 23 22 21 36 36 H 1.08998 * 117.49897 * 214.98004 * 24 22 21 37 37 H 1.09002 * 117.49732 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 8 1.6559 2.0918 1.2407 14 6 0.4678 2.7281 1.2560 15 8 -0.2279 2.7403 0.2593 16 6 0.0131 3.4077 2.4788 17 6 0.7236 3.4902 3.7601 18 6 -0.0631 4.2037 4.5844 19 7 -1.1966 4.5655 3.9170 20 1 -1.9207 5.0868 4.2976 21 6 -1.1649 4.1020 2.6535 22 6 -2.2339 4.3048 1.6108 23 6 -3.3679 5.2772 1.9415 24 6 -3.6335 3.7698 1.9206 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 1.6876 3.0632 3.9942 32 1 0.1654 4.4502 5.6107 33 1 -1.8956 4.2595 0.5756 34 1 -3.3405 5.7706 2.9130 35 1 -3.7759 5.8714 1.1238 36 1 -4.2160 3.3730 1.0893 37 1 -3.7811 3.2717 2.8789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805929202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:17 Heat of formation + Delta-G solvation = -45.953154 kcal Electronic energy + Delta-G solvation = -19903.067437 eV Core-core repulsion = 16838.994036 eV Total energy + Delta-G solvation = -3064.073401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29341 -40.74886 -37.82123 -37.34883 -35.40954 -33.36686 -32.05804 -30.12663 -29.28227 -25.76862 -24.60444 -23.35362 -23.20648 -21.97315 -21.33821 -20.40184 -18.88047 -18.61086 -17.78754 -16.92927 -16.74351 -16.28665 -16.10406 -15.28772 -15.10956 -14.80414 -14.68534 -14.08425 -13.85234 -13.52906 -13.31936 -13.11221 -13.06352 -12.86783 -12.78649 -12.51575 -12.48513 -12.11271 -11.73893 -11.70799 -11.47383 -11.35736 -11.07994 -10.76710 -10.49977 -9.85663 -9.08267 -8.25684 -6.42211 0.52051 1.41415 1.42658 1.48609 1.56681 2.00305 2.32989 2.39824 2.61367 2.94652 3.03559 3.50551 3.82435 4.05349 4.13245 4.24202 4.33167 4.39609 4.41700 4.51399 4.60945 4.67346 4.86724 4.90773 4.94924 5.07782 5.14086 5.14890 5.19841 5.25558 5.44118 5.54802 5.69557 5.70636 5.93097 6.02158 6.21880 6.60799 6.65031 7.16599 7.34165 8.81803 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.005134 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.830462 B = 5452.318089 C = 5965.332129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.127 4.127 3 C 0.226 3.774 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.062 0.938 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.275 1.275 13 O -0.364 6.364 14 C 0.518 3.482 15 O -0.553 6.553 16 C -0.260 4.260 17 C -0.178 4.178 18 C 0.009 3.991 19 N -0.527 5.527 20 H 0.436 0.564 21 C 0.147 3.853 22 C -0.130 4.130 23 C -0.148 4.148 24 C -0.159 4.159 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.270 0.730 31 H 0.144 0.856 32 H 0.222 0.778 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 9.069 14.158 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.080 0.920 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.200 1.200 13 O -0.280 6.280 14 C 0.366 3.634 15 O -0.448 6.448 16 C -0.268 4.268 17 C -0.201 4.201 18 C -0.117 4.117 19 N -0.124 5.124 20 H 0.277 0.723 21 C 0.028 3.972 22 C -0.149 4.149 23 C -0.185 4.185 24 C -0.196 4.196 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.238 0.762 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.544 9.027 13.791 20.713 hybrid contribution 0.810 -0.188 -0.734 1.110 sum -11.734 8.839 13.056 19.654 Atomic orbital electron populations 1.21669 0.96313 1.00339 0.99976 1.21841 0.94468 0.98144 1.02081 1.20324 0.94472 0.89224 0.78743 0.97875 1.21362 0.90552 1.39834 1.06890 0.91972 1.25820 1.04367 0.93815 0.94243 1.70030 1.37374 1.38075 1.09852 0.85146 0.77555 0.78408 0.78352 1.18927 1.19442 1.19997 1.86528 1.35868 1.63442 1.42209 1.20760 0.79290 0.75599 0.87706 1.90687 1.56235 1.60956 1.36872 1.19730 0.99874 1.12930 0.94290 1.22270 1.01406 1.04802 0.91642 1.22286 0.86630 1.02859 0.99966 1.41376 1.19238 1.43273 1.08545 0.72279 1.19503 0.94611 0.96668 0.86455 1.20710 0.87895 1.09364 0.96935 1.23199 0.98342 0.92203 1.04733 1.23128 0.94970 0.97366 1.04123 0.92029 0.94513 0.94879 0.93925 0.89464 0.92032 0.83770 0.76181 0.87519 0.86396 0.86671 0.87724 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.56 71.98 0.62 -5.41 16 2 C -0.13 -6.92 5.49 30.60 0.17 -6.75 16 3 C 0.23 13.34 2.25 29.85 0.07 13.40 16 4 H 0.00 0.23 7.16 -2.39 -0.02 0.21 16 5 C -0.55 -33.15 8.90 25.60 0.23 -32.92 16 6 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.92 -54.43 11.29 21.45 0.24 -54.19 16 9 Si 0.98 44.64 29.54 68.60 2.03 46.66 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 O -0.36 -19.84 9.71 -56.94 -0.55 -20.39 16 14 C 0.52 25.42 6.40 70.15 0.45 25.87 16 15 O -0.55 -28.87 12.14 19.67 0.24 -28.63 16 16 C -0.26 -9.96 6.33 -18.82 -0.12 -10.08 16 17 C -0.18 -5.47 11.00 23.62 0.26 -5.21 16 18 C 0.01 0.18 11.87 83.11 0.99 1.17 16 19 N -0.53 -9.68 5.80 -182.02 -1.05 -10.74 16 20 H 0.44 4.01 7.85 -92.71 -0.73 3.29 16 21 C 0.15 4.25 6.73 42.04 0.28 4.53 16 22 C -0.13 -3.46 5.63 -11.54 -0.06 -3.52 16 23 C -0.15 -2.29 10.13 30.62 0.31 -1.98 16 24 C -0.16 -3.08 10.24 30.62 0.31 -2.76 16 25 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.04 1.84 7.79 -2.39 -0.02 1.82 16 27 H 0.03 1.56 6.06 -2.38 -0.01 1.55 16 28 H 0.04 2.23 8.14 -2.39 -0.02 2.22 16 29 H 0.09 5.08 5.95 -2.39 -0.01 5.06 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.22 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.11 3.69 6.69 -2.38 -0.02 3.68 16 34 H 0.12 1.10 7.09 -2.39 -0.02 1.08 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -77.11 310.16 5.20 -71.91 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.36 Total: 17.60 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 3.95 Total: -22.22 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.81 Total: -64.93 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.31 Total: -49.02 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -77.11 5.20 -71.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805929202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.953 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds