Wall clock time and date at job start Mon Mar 30 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 C 1.50702 * 109.47031 * 119.99731 * 2 1 3 5 5 C 1.38619 * 120.32321 * 119.98168 * 4 2 1 6 6 C 1.38594 * 118.49042 * 179.77324 * 5 4 2 7 7 C 1.39348 * 119.05730 * 0.48676 * 6 5 4 8 8 C 1.48065 * 119.72992 * 179.77376 * 7 6 5 9 9 O 1.21427 * 120.00136 * 359.73178 * 8 7 6 10 10 O 1.34672 * 120.00067 * 179.72735 * 8 7 6 11 11 C 1.45202 * 117.00349 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46505 * 330.00184 * 11 10 8 13 13 C 1.53006 * 109.47243 * 89.99728 * 11 10 8 14 14 C 1.50698 * 109.47680 * 210.00220 * 11 10 8 15 15 H 1.08004 * 119.99528 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00356 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00020 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99603 * 359.97438 * 16 14 11 19 19 H 1.48495 * 109.47195 * 90.00782 * 18 16 14 20 20 H 1.48502 * 109.46875 * 210.00223 * 18 16 14 21 21 H 1.48493 * 109.47388 * 330.00132 * 18 16 14 22 22 N 1.32750 * 120.54421 * 359.50165 * 7 6 5 23 23 C 1.31510 * 121.64278 * 0.25058 * 22 7 6 24 24 H 1.08998 * 109.47543 * 300.00579 * 1 2 3 25 25 H 1.09008 * 109.47196 * 60.00758 * 1 2 3 26 26 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47543 * 239.99421 * 2 1 3 28 28 H 1.09004 * 109.46787 * 299.99499 * 3 2 1 29 29 H 1.08998 * 109.47273 * 59.99256 * 3 2 1 30 30 H 1.09004 * 109.47523 * 180.02562 * 3 2 1 31 31 H 1.07995 * 120.75651 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.47604 * 180.26855 * 6 5 4 33 33 H 1.09001 * 109.47002 * 60.00200 * 13 11 10 34 34 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47050 * 300.00466 * 13 11 10 36 36 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 37 37 H 1.07995 * 119.55011 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8293 -1.8382 1.1112 6 6 3.2740 -2.4588 2.2678 7 6 2.8981 -1.9363 3.5037 8 6 3.3606 -2.5904 4.7489 9 8 4.0606 -3.5809 4.6905 10 8 3.0051 -2.0868 5.9462 11 6 3.4954 -2.7793 7.1246 12 1 3.6154 -3.8390 6.8995 13 6 4.8454 -2.1896 7.5379 14 6 2.5088 -2.6137 8.2516 15 1 1.6038 -2.0445 8.0977 16 6 2.7617 -3.1878 9.4793 17 7 1.9009 -3.0429 10.4629 18 14 4.3272 -4.1716 9.7455 19 1 5.4042 -3.2683 10.2241 20 1 4.0812 -5.2288 10.7589 21 1 4.7407 -4.8000 8.4652 22 7 2.1331 -0.8537 3.5739 23 6 1.7015 -0.2425 2.4924 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 3.1009 -2.2222 0.1390 32 1 3.9002 -3.3370 2.2122 33 1 4.7255 -1.1299 7.7629 34 1 5.2136 -2.7097 8.4221 35 1 5.5591 -2.3095 6.7227 36 1 2.0787 -3.4471 11.3266 37 1 1.0811 0.6362 2.5889 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810582830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:15 Heat of formation + Delta-G solvation = -57.792904 kcal Electronic energy + Delta-G solvation = -19270.832420 eV Core-core repulsion = 16206.245609 eV Total energy + Delta-G solvation = -3064.586811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69864 -39.30336 -36.25140 -35.80457 -33.17519 -32.39998 -30.88920 -30.17881 -27.47220 -25.39204 -25.02229 -23.93558 -22.15860 -20.63688 -20.03815 -17.95321 -17.12164 -16.50108 -16.04152 -15.51214 -15.37022 -14.87524 -14.53373 -14.29954 -14.10844 -13.53034 -13.23059 -13.12136 -12.91855 -12.63413 -12.49574 -12.27858 -11.83824 -11.55830 -11.49926 -11.41127 -11.19067 -10.86865 -10.28911 -10.17328 -9.97363 -9.76153 -9.68779 -9.41506 -9.10397 -9.08122 -8.65208 -6.18577 -4.20574 0.55730 1.15385 2.79030 3.21213 3.25902 3.33150 3.35711 3.86709 4.17493 4.29727 4.41069 4.47658 4.71008 4.82771 4.92907 5.01985 5.09280 5.12511 5.30473 5.36936 5.47157 5.50572 5.63586 5.68887 5.80962 5.90153 5.90879 6.10144 6.17527 6.30149 6.40465 6.48637 6.60618 7.02317 7.32449 7.51345 7.76815 8.24155 8.59661 8.90335 9.38213 10.93638 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.039552 B = 0.004101 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.763788 B = 6826.430758 C = 7168.989840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.085 4.085 6 C -0.108 4.108 7 C 0.098 3.902 8 C 0.510 3.490 9 O -0.514 6.514 10 O -0.313 6.313 11 C 0.187 3.813 12 H 0.047 0.953 13 C -0.170 4.170 14 C -0.522 4.522 15 H 0.089 0.911 16 C 0.079 3.921 17 N -0.889 5.889 18 Si 0.879 3.121 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.262 1.262 22 N -0.424 5.424 23 C 0.100 3.900 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.269 0.731 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 6.098 -22.471 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.204 4.204 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.038 4.038 8 C 0.353 3.647 9 O -0.404 6.404 10 O -0.227 6.227 11 C 0.133 3.867 12 H 0.064 0.936 13 C -0.227 4.227 14 C -0.560 4.560 15 H 0.107 0.893 16 C -0.123 4.123 17 N -0.526 5.526 18 Si 0.708 3.292 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.187 1.187 22 N -0.135 5.135 23 C -0.061 4.061 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.699 6.054 -21.346 22.199 hybrid contribution 1.141 -0.941 -0.427 1.539 sum 1.840 5.113 -21.773 22.441 Atomic orbital electron populations 1.21888 0.93750 1.02385 1.02430 1.20119 0.96352 0.96196 0.94549 1.21886 1.01389 0.94713 1.02427 1.21196 0.97265 0.95975 0.96742 1.21460 0.96268 0.94609 0.98760 1.22123 0.98787 1.00522 0.91375 1.20380 0.97805 0.93996 0.91663 1.20748 0.77411 0.81556 0.85008 1.90774 1.36195 1.25270 1.88114 1.86700 1.67592 1.54612 1.13804 1.21026 0.92603 0.92601 0.80420 0.93562 1.22526 0.97678 1.02561 0.99915 1.20785 1.06639 1.35296 0.93298 0.89323 1.24724 0.96794 0.95537 0.95294 1.69840 1.35632 1.44191 1.02896 0.86974 0.83548 0.80080 0.78592 1.19979 1.21682 1.18712 1.67783 1.06826 1.06141 1.32724 1.22740 0.97622 0.99020 0.86688 0.91989 0.91997 0.92342 0.90064 0.92002 0.92003 0.92398 0.84084 0.83259 0.91630 0.92464 0.94436 0.92096 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.01 37.15 0.33 -0.61 16 2 C -0.05 -0.37 3.11 -91.78 -0.29 -0.65 16 3 C -0.15 -0.92 9.01 37.16 0.33 -0.58 16 4 C -0.11 -1.10 4.80 -104.35 -0.50 -1.60 16 5 C -0.09 -0.87 9.79 -39.31 -0.39 -1.26 16 6 C -0.11 -1.47 9.63 -39.04 -0.38 -1.84 16 7 C 0.10 1.73 6.75 -83.03 -0.56 1.17 16 8 C 0.51 11.12 7.92 34.76 0.28 11.39 16 9 O -0.51 -11.71 15.58 -19.21 -0.30 -12.01 16 10 O -0.31 -7.78 9.68 -40.42 -0.39 -8.18 16 11 C 0.19 4.93 2.16 -27.88 -0.06 4.87 16 12 H 0.05 1.26 6.22 -51.93 -0.32 0.94 16 13 C -0.17 -4.01 9.03 37.16 0.34 -3.68 16 14 C -0.52 -15.49 9.48 -34.44 -0.33 -15.82 16 15 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 16 C 0.08 2.33 5.45 -17.82 -0.10 2.24 16 17 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 18 Si 0.88 22.01 24.37 -169.99 -4.14 17.87 16 19 H -0.27 -6.55 6.87 56.52 0.39 -6.16 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 22 N -0.42 -7.26 10.12 -9.81 -0.10 -7.36 16 23 C 0.10 1.25 9.90 -17.56 -0.17 1.07 16 24 H 0.06 0.41 7.41 -51.93 -0.38 0.03 16 25 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.47 7.92 -51.93 -0.41 0.05 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 7.41 -51.93 -0.38 0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 0.97 8.00 -52.49 -0.42 0.55 16 32 H 0.15 1.88 7.64 -52.49 -0.40 1.48 16 33 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.36 3.27 -51.93 -0.17 1.19 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.16 1.59 7.12 -52.49 -0.37 1.21 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -33.39 310.44 -5.97 -39.36 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.01 Total: -2.62 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.48 Total: -5.30 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.67 Total: -33.81 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.69 Total: -20.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.39 -5.97 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810582830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.430 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds