Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 C 1.50702 * 109.47031 * 119.99731 * 2 1 3 5 5 C 1.38619 * 120.32321 * 119.98168 * 4 2 1 6 6 C 1.38594 * 118.49042 * 179.77324 * 5 4 2 7 7 C 1.39348 * 119.05730 * 0.48676 * 6 5 4 8 8 C 1.48065 * 119.72992 * 179.77376 * 7 6 5 9 9 O 1.21427 * 120.00136 * 359.73178 * 8 7 6 10 10 O 1.34672 * 120.00067 * 179.72735 * 8 7 6 11 11 C 1.45202 * 117.00349 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46505 * 330.00184 * 11 10 8 13 13 C 1.53006 * 109.47243 * 89.99728 * 11 10 8 14 14 C 1.50698 * 109.47680 * 210.00220 * 11 10 8 15 15 H 1.08004 * 119.99528 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00356 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00020 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99603 * 359.97438 * 16 14 11 19 19 H 1.48495 * 109.47195 * 90.00782 * 18 16 14 20 20 H 1.48502 * 109.46875 * 210.00223 * 18 16 14 21 21 H 1.48493 * 109.47388 * 330.00132 * 18 16 14 22 22 N 1.32750 * 120.54421 * 359.50165 * 7 6 5 23 23 C 1.31510 * 121.64278 * 0.25058 * 22 7 6 24 24 H 1.08998 * 109.47543 * 300.00579 * 1 2 3 25 25 H 1.09008 * 109.47196 * 60.00758 * 1 2 3 26 26 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47543 * 239.99421 * 2 1 3 28 28 H 1.09004 * 109.46787 * 299.99499 * 3 2 1 29 29 H 1.08998 * 109.47273 * 59.99256 * 3 2 1 30 30 H 1.09004 * 109.47523 * 180.02562 * 3 2 1 31 31 H 1.07995 * 120.75651 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.47604 * 180.26855 * 6 5 4 33 33 H 1.09001 * 109.47002 * 60.00200 * 13 11 10 34 34 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47050 * 300.00466 * 13 11 10 36 36 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 37 37 H 1.07995 * 119.55011 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8293 -1.8382 1.1112 6 6 3.2740 -2.4588 2.2678 7 6 2.8981 -1.9363 3.5037 8 6 3.3606 -2.5904 4.7489 9 8 4.0606 -3.5809 4.6905 10 8 3.0051 -2.0868 5.9462 11 6 3.4954 -2.7793 7.1246 12 1 3.6154 -3.8390 6.8995 13 6 4.8454 -2.1896 7.5379 14 6 2.5088 -2.6137 8.2516 15 1 1.6038 -2.0445 8.0977 16 6 2.7617 -3.1878 9.4793 17 7 1.9009 -3.0429 10.4629 18 14 4.3272 -4.1716 9.7455 19 1 5.4042 -3.2683 10.2241 20 1 4.0812 -5.2288 10.7589 21 1 4.7407 -4.8000 8.4652 22 7 2.1331 -0.8537 3.5739 23 6 1.7015 -0.2425 2.4924 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 3.1009 -2.2222 0.1390 32 1 3.9002 -3.3370 2.2122 33 1 4.7255 -1.1299 7.7629 34 1 5.2136 -2.7097 8.4221 35 1 5.5591 -2.3095 6.7227 36 1 2.0787 -3.4471 11.3266 37 1 1.0811 0.6362 2.5889 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810582830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = -79.589860 kcal Electronic energy + Delta-G solvation = -19271.777607 eV Core-core repulsion = 16206.245609 eV Total energy + Delta-G solvation = -3065.531998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.93476 -40.83130 -37.83426 -36.81399 -35.31914 -33.41957 -32.78044 -31.38273 -27.94175 -27.41064 -26.37549 -24.92906 -23.73119 -21.93229 -21.26157 -19.63820 -18.68032 -18.29797 -17.60271 -17.06955 -16.62143 -16.30471 -15.70455 -15.27170 -15.06129 -14.93170 -14.58441 -14.39315 -14.23124 -13.96109 -13.87589 -13.62788 -13.43022 -12.96325 -12.88690 -12.26380 -12.07145 -12.04900 -12.02143 -11.75677 -11.71970 -11.54708 -11.28489 -10.95135 -10.85859 -10.52672 -10.10963 -8.46330 -6.56192 -0.58376 0.20070 1.22651 1.30066 1.33653 1.40479 1.70600 2.18678 2.70561 2.85632 3.10363 3.58515 3.68781 3.84538 3.89793 4.00774 4.17475 4.30684 4.31502 4.35777 4.45248 4.56632 4.65366 4.73117 4.84826 4.86942 4.95467 5.04523 5.13125 5.15925 5.21868 5.28606 5.43545 5.48918 5.50828 5.55073 6.05804 6.46641 6.58562 6.89889 7.08241 8.70104 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.039552 B = 0.004101 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.763788 B = 6826.430758 C = 7168.989840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.074 4.074 6 C -0.099 4.099 7 C 0.056 3.944 8 C 0.505 3.495 9 O -0.533 6.533 10 O -0.336 6.336 11 C 0.189 3.811 12 H 0.035 0.965 13 C -0.162 4.162 14 C -0.543 4.543 15 H 0.041 0.959 16 C 0.030 3.970 17 N -0.930 5.930 18 Si 0.944 3.056 19 H -0.248 1.248 20 H -0.279 1.279 21 H -0.256 1.256 22 N -0.468 5.468 23 C 0.092 3.908 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.188 0.812 32 H 0.157 0.843 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.277 0.723 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 6.215 -25.527 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.067 4.067 3 C -0.205 4.205 4 C -0.088 4.088 5 C -0.099 4.099 6 C -0.120 4.120 7 C -0.078 4.078 8 C 0.350 3.650 9 O -0.423 6.423 10 O -0.250 6.250 11 C 0.135 3.865 12 H 0.053 0.947 13 C -0.219 4.219 14 C -0.580 4.580 15 H 0.060 0.940 16 C -0.170 4.170 17 N -0.568 5.568 18 Si 0.768 3.232 19 H -0.173 1.173 20 H -0.206 1.206 21 H -0.180 1.180 22 N -0.179 5.179 23 C -0.070 4.070 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.205 0.795 32 H 0.175 0.825 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.056 6.180 -24.417 25.271 hybrid contribution 0.541 -0.861 0.343 1.073 sum 2.597 5.319 -24.073 24.791 Atomic orbital electron populations 1.21910 0.93283 1.02276 1.03121 1.20240 0.96575 0.96429 0.93486 1.21903 1.01222 0.94246 1.03122 1.21634 0.95027 0.95169 0.97018 1.21959 0.94833 0.93793 0.99330 1.22283 0.98304 1.00570 0.90811 1.20035 1.01166 0.95887 0.90734 1.21570 0.76833 0.81492 0.85149 1.90725 1.37207 1.26106 1.88304 1.86687 1.68538 1.55049 1.14758 1.20762 0.93043 0.92415 0.80312 0.94739 1.22406 0.96327 1.02485 1.00729 1.20916 1.06280 1.35455 0.95386 0.94033 1.25610 1.00548 0.96276 0.94518 1.69965 1.37870 1.45266 1.03694 0.85926 0.79357 0.78922 0.78964 1.17336 1.20587 1.18013 1.67598 1.08035 1.06900 1.35410 1.23159 0.97606 0.99345 0.86842 0.92619 0.90131 0.92863 0.87579 0.90183 0.92576 0.92689 0.79506 0.82545 0.91383 0.92096 0.92291 0.91398 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.01 71.98 0.65 -0.77 16 2 C -0.05 -0.47 3.11 -11.54 -0.04 -0.50 16 3 C -0.15 -1.33 9.01 71.98 0.65 -0.68 16 4 C -0.09 -1.48 4.80 -19.69 -0.09 -1.57 16 5 C -0.07 -1.26 9.79 22.45 0.22 -1.04 16 6 C -0.10 -2.56 9.63 22.62 0.22 -2.34 16 7 C 0.06 2.02 6.75 41.88 0.28 2.30 16 8 C 0.50 22.81 7.92 70.43 0.56 23.37 16 9 O -0.53 -24.81 15.58 20.07 0.31 -24.49 16 10 O -0.34 -17.52 9.68 -55.81 -0.54 -18.06 16 11 C 0.19 10.25 2.16 29.85 0.06 10.32 16 12 H 0.03 1.94 6.22 -2.39 -0.01 1.92 16 13 C -0.16 -7.62 9.03 71.98 0.65 -6.97 16 14 C -0.54 -33.77 9.48 25.60 0.24 -33.53 16 15 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 16 C 0.03 1.81 5.45 84.65 0.46 2.28 16 17 N -0.93 -58.60 13.96 21.45 0.30 -58.30 16 18 Si 0.94 45.26 24.37 68.60 1.67 46.93 16 19 H -0.25 -10.92 6.87 99.48 0.68 -10.24 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.26 -11.96 6.53 99.48 0.65 -11.31 16 22 N -0.47 -16.38 10.12 -184.95 -1.87 -18.25 16 23 C 0.09 2.20 9.90 84.82 0.84 3.04 16 24 H 0.05 0.61 7.41 -2.39 -0.02 0.59 16 25 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.11 0.61 7.92 -2.39 -0.02 0.59 16 28 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.06 0.58 7.41 -2.39 -0.02 0.56 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.19 1.49 8.00 -2.91 -0.02 1.46 16 32 H 0.16 3.72 7.64 -2.91 -0.02 3.70 16 33 H 0.07 3.10 8.14 -2.39 -0.02 3.09 16 34 H 0.06 2.78 3.27 -2.39 -0.01 2.77 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 37 H 0.18 3.38 7.12 -2.91 -0.02 3.36 16 Total: -1.00 -76.98 310.44 5.56 -71.42 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.99 Total: 6.87 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 4.70 Total: -6.10 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.57 Total: -76.56 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -0.23 Total: -42.56 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.93 kcal Total: -76.98 5.56 -71.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810582830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.173 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds