Wall clock time and date at job start Mon Mar 30 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39802 * 126.51630 * 2 1 4 4 C 1.35488 * 107.84177 * 180.29177 * 3 2 1 5 5 N 1.34962 * 108.98631 * 359.74049 * 4 3 2 6 6 C 1.46493 * 125.63428 * 179.97438 * 5 4 3 7 7 C 1.37699 * 108.72622 * 0.02562 * 5 4 3 8 8 C 1.46501 * 126.26005 * 180.02562 * 7 5 4 9 9 O 1.21620 * 119.99625 * 179.97438 * 8 7 5 10 10 O 1.34896 * 119.99923 * 359.97438 * 8 7 5 11 11 C 1.45197 * 116.99951 * 183.14558 * 10 8 7 12 12 C 1.50707 * 112.84413 * 294.87609 * 11 10 8 13 13 H 1.07999 * 119.99691 * 118.46474 * 12 11 10 14 14 C 1.37873 * 119.99813 * 298.45612 * 12 11 10 15 15 N 1.31512 * 120.00341 * 1.73168 * 14 12 11 16 16 Si 1.86805 * 119.99828 * 181.72623 * 14 12 11 17 17 H 1.48499 * 109.47090 * 270.00694 * 16 14 12 18 18 H 1.48503 * 109.46842 * 30.00345 * 16 14 12 19 19 H 1.48497 * 109.47259 * 150.00283 * 16 14 12 20 20 C 1.53780 * 113.61690 * 66.07165 * 11 10 8 21 21 C 1.53949 * 87.02106 * 89.22889 * 20 11 10 22 22 C 1.53777 * 113.61652 * 163.68080 * 11 10 8 23 23 H 1.08989 * 109.47330 * 270.14123 * 1 2 3 24 24 H 1.08996 * 109.46573 * 30.14678 * 1 2 3 25 25 H 1.09004 * 109.46851 * 150.14197 * 1 2 3 26 26 H 1.07997 * 126.07702 * 0.03787 * 3 2 1 27 27 H 1.07999 * 125.50474 * 179.75483 * 4 3 2 28 28 H 1.08996 * 109.47608 * 270.04531 * 6 5 4 29 29 H 1.08998 * 109.47038 * 30.05020 * 6 5 4 30 30 H 1.09001 * 109.46842 * 150.04056 * 6 5 4 31 31 H 0.96995 * 119.99779 * 355.06547 * 15 14 12 32 32 H 1.09002 * 113.61547 * 203.75510 * 20 11 10 33 33 H 1.09006 * 113.61285 * 334.65036 * 20 11 10 34 34 H 1.09002 * 113.54210 * 270.81559 * 21 20 11 35 35 H 1.08998 * 113.74507 * 139.93877 * 21 20 11 36 36 H 1.08999 * 113.61390 * 25.34550 * 22 11 10 37 37 H 1.09000 * 113.61776 * 156.16339 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1236 0.0000 4 6 3.6225 0.6898 -0.0066 5 7 3.6298 -0.6598 -0.0049 6 6 4.8251 -1.5068 -0.0110 7 6 2.3282 -1.1090 0.0023 8 6 1.8944 -2.5083 0.0068 9 8 0.7084 -2.7773 0.0136 10 8 2.8106 -3.4985 0.0034 11 6 2.3098 -4.8597 -0.0628 12 6 1.5160 -5.2511 1.1570 13 1 0.4761 -5.5255 1.0593 14 6 2.1176 -5.2589 2.3976 15 7 3.3744 -4.8921 2.5214 16 14 1.1472 -5.7903 3.9028 17 1 0.4835 -4.6072 4.5069 18 1 0.1188 -6.7844 3.5031 19 1 2.0677 -6.4018 4.8947 20 6 1.6062 -5.1935 -1.3888 21 6 2.9863 -5.6210 -1.9207 22 6 3.3795 -5.8911 -0.4587 23 1 -0.3633 0.0025 1.0275 24 1 -0.3632 0.8887 -0.5161 25 1 -0.3633 -0.8913 -0.5117 26 1 2.0159 2.1541 0.0006 27 1 4.4982 1.3218 -0.0120 28 1 5.1159 -1.7176 -1.0401 29 1 5.6389 -0.9905 0.4981 30 1 4.6098 -2.4427 0.5047 31 1 3.8991 -4.6850 1.7323 32 1 0.8946 -6.0155 -1.3107 33 1 1.1930 -4.3213 -1.8955 34 1 3.5469 -4.8070 -2.3803 35 1 2.9598 -6.5185 -2.5386 36 1 4.3959 -5.5813 -0.2156 37 1 3.1544 -6.9039 -0.1246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:16 Heat of formation + Delta-G solvation = -38.597489 kcal Electronic energy + Delta-G solvation = -20898.981957 eV Core-core repulsion = 17835.227521 eV Total energy + Delta-G solvation = -3063.754435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.40305 -41.04727 -38.76276 -36.19933 -34.55234 -34.44438 -31.24010 -29.38263 -28.02793 -26.58186 -26.24559 -24.91613 -23.59866 -21.43826 -20.39688 -20.13498 -19.40114 -18.15002 -17.16848 -16.94076 -16.36228 -16.18856 -15.72620 -15.45185 -15.18787 -14.63673 -14.43737 -14.31486 -14.13986 -13.78578 -13.48909 -13.26260 -12.90911 -12.86465 -12.76256 -12.57010 -12.38753 -12.30977 -12.04644 -11.95963 -11.81719 -11.27339 -10.91068 -10.58645 -10.16971 -9.50173 -9.18789 -8.62131 -6.39721 0.41010 1.45586 1.51281 1.71296 1.79716 1.88659 2.10501 2.31366 2.49631 3.15833 3.73737 3.78346 3.93651 3.95699 4.08876 4.18347 4.27695 4.36801 4.38471 4.49059 4.69485 4.81365 4.83215 4.85717 4.86019 4.95359 5.01845 5.03842 5.12341 5.32895 5.39185 5.55641 5.71702 5.82682 6.00315 6.08807 6.21802 6.38672 6.61225 7.17523 7.41524 8.76300 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.008230 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.961505 B = 3401.310983 C = 3810.429075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.094 4.094 3 C -0.222 4.222 4 C 0.041 3.959 5 N -0.419 5.419 6 C 0.064 3.936 7 C -0.089 4.089 8 C 0.524 3.476 9 O -0.529 6.529 10 O -0.354 6.354 11 C 0.189 3.811 12 C -0.606 4.606 13 H 0.034 0.966 14 C -0.010 4.010 15 N -0.913 5.913 16 Si 1.103 2.897 17 H -0.288 1.288 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.146 4.146 21 C -0.119 4.119 22 C -0.106 4.106 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.175 0.825 27 H 0.217 0.783 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.271 0.729 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 9.458 -6.764 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.246 4.246 4 C -0.096 4.096 5 N -0.093 5.093 6 C -0.076 4.076 7 C -0.199 4.199 8 C 0.370 3.630 9 O -0.419 6.419 10 O -0.271 6.271 11 C 0.154 3.846 12 C -0.644 4.644 13 H 0.052 0.948 14 C -0.212 4.212 15 N -0.549 5.549 16 Si 0.926 3.074 17 H -0.215 1.215 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.183 4.183 21 C -0.157 4.157 22 C -0.143 4.143 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.193 0.807 27 H 0.234 0.766 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.394 8.852 -5.147 11.143 hybrid contribution -0.465 -0.188 -1.427 1.512 sum 3.929 8.664 -6.573 11.563 Atomic orbital electron populations 1.20294 0.89250 1.02711 1.01907 1.20348 0.96396 0.91418 1.02131 1.21077 0.91449 0.98916 1.13112 1.22696 1.00949 0.81960 1.04013 1.44069 1.05257 1.07512 1.52459 1.22391 0.85094 0.95543 1.04583 1.19704 0.85818 0.90462 1.23916 1.20080 0.84544 0.85271 0.73069 1.90730 1.18834 1.84578 1.47775 1.86453 1.40031 1.17689 1.82911 1.21081 0.93471 0.76333 0.93676 1.22248 0.97767 1.49714 0.94630 0.94753 1.26935 0.97490 0.93217 1.03582 1.70771 1.08622 1.41726 1.33786 0.83122 0.74576 0.76707 0.72991 1.21507 1.19750 1.19705 1.23315 0.97497 1.00206 0.97322 1.22840 0.95342 1.01713 0.95766 1.22886 0.97660 0.98115 0.95674 0.92114 0.88847 0.93139 0.80748 0.76614 0.89225 0.86273 0.91320 0.91780 0.90324 0.93984 0.90124 0.89180 0.92525 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.88 9.83 71.24 0.70 -2.18 16 2 C -0.09 -3.44 6.22 -19.54 -0.12 -3.56 16 3 C -0.22 -6.00 10.76 22.01 0.24 -5.77 16 4 C 0.04 1.00 11.35 83.58 0.95 1.95 16 5 N -0.42 -13.78 3.15 -534.86 -1.68 -15.46 16 6 C 0.06 1.82 10.56 127.77 1.35 3.17 16 7 C -0.09 -3.76 6.89 40.32 0.28 -3.48 16 8 C 0.52 26.58 7.30 69.98 0.51 27.09 16 9 O -0.53 -29.51 12.98 19.44 0.25 -29.26 16 10 O -0.35 -17.81 6.53 -58.10 -0.38 -18.19 16 11 C 0.19 9.64 0.11 -11.01 0.00 9.64 16 12 C -0.61 -35.44 7.35 25.60 0.19 -35.25 16 13 H 0.03 2.11 7.81 -2.91 -0.02 2.09 16 14 C -0.01 -0.55 5.40 84.65 0.46 -0.10 16 15 N -0.91 -54.11 13.51 21.45 0.29 -53.82 16 16 Si 1.10 52.59 29.90 68.60 2.05 54.65 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 C -0.15 -6.58 6.91 31.18 0.22 -6.36 16 21 C -0.12 -4.39 8.03 31.18 0.25 -4.14 16 22 C -0.11 -4.64 6.66 31.12 0.21 -4.43 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.05 1.99 6.50 -2.39 -0.02 1.98 16 26 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.22 2.95 8.06 -2.91 -0.02 2.92 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 2.58 6.15 -2.39 -0.01 2.56 16 31 H 0.27 15.85 5.76 -92.71 -0.53 15.32 16 32 H 0.08 3.53 8.09 -2.39 -0.02 3.51 16 33 H 0.04 1.95 7.33 -2.38 -0.02 1.94 16 34 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.06 2.45 7.77 -2.39 -0.02 2.43 16 37 H 0.08 3.68 8.09 -2.39 -0.02 3.66 16 Total: -1.00 -74.52 307.22 7.04 -67.47 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.30 Total: 18.02 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 5.22 Total: -23.41 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.39 Total: -69.28 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.13 Total: -47.45 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 2.05 Total: 54.65 kcal Total: -74.52 7.04 -67.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.875 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds