Wall clock time and date at job start Mon Mar 30 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38674 * 120.78556 * 2 1 4 4 C 1.38189 * 119.15732 * 180.02562 * 3 2 1 5 5 N 1.31877 * 120.77012 * 359.97438 * 4 3 2 6 6 C 1.31858 * 121.72559 * 359.77583 * 5 4 3 7 7 C 1.38230 * 120.76169 * 0.49223 * 6 5 4 8 8 C 1.50703 * 120.42012 * 179.77640 * 7 6 5 9 9 H 1.08994 * 109.46888 * 144.71804 * 8 7 6 10 10 C 1.53007 * 109.46692 * 264.71770 * 8 7 6 11 11 O 1.45198 * 109.47160 * 24.71809 * 8 7 6 12 12 C 1.34221 * 116.99903 * 150.00217 * 11 8 7 13 13 O 1.20826 * 120.00367 * 359.97438 * 12 11 8 14 14 C 1.50706 * 120.00092 * 180.02562 * 12 11 8 15 15 C 1.52997 * 109.47238 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99493 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99862 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47053 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46689 * 120.00372 * 20 18 16 23 23 H 1.48497 * 109.46761 * 240.00181 * 20 18 16 24 24 H 1.09005 * 109.46413 * 269.96936 * 1 2 3 25 25 H 1.08992 * 109.47202 * 29.97123 * 1 2 3 26 26 H 1.08993 * 109.46919 * 149.97493 * 1 2 3 27 27 H 1.07991 * 120.42166 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.61263 * 180.02562 * 4 3 2 29 29 H 1.07994 * 119.62321 * 180.23949 * 6 5 4 30 30 H 1.08998 * 109.46762 * 179.97438 * 10 8 7 31 31 H 1.08996 * 109.47318 * 299.99834 * 10 8 7 32 32 H 1.09000 * 109.47069 * 60.00060 * 10 8 7 33 33 H 1.09001 * 109.46953 * 299.99668 * 14 12 11 34 34 H 1.09000 * 109.47318 * 59.99266 * 14 12 11 35 35 H 1.09001 * 109.46832 * 299.99686 * 15 14 12 36 36 H 1.09004 * 109.47261 * 59.99705 * 15 14 12 37 37 H 0.96999 * 119.99718 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5984 -1.1515 0.0044 7 6 2.2167 -1.1909 -0.0005 8 6 1.4909 -2.5116 0.0001 9 1 0.5787 -2.4246 0.5902 10 6 1.1341 -2.8980 -1.4368 11 8 2.3456 -3.5333 0.5780 12 6 1.7386 -4.5454 1.2173 13 8 0.5330 -4.5765 1.2919 14 6 2.5607 -5.6426 1.8430 15 6 1.6313 -6.6639 2.5017 16 6 2.4534 -7.7613 3.1269 17 1 3.5311 -7.7329 3.0613 18 6 1.8299 -8.8012 3.7835 19 7 0.5177 -8.8354 3.8637 20 14 2.8490 -10.1611 4.5590 21 1 4.2911 -9.8910 4.3296 22 1 2.5800 -10.2102 6.0186 23 1 2.4860 -11.4633 3.9446 24 1 -0.3632 -0.0005 1.0278 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6967 2.1377 0.0004 28 1 4.1583 2.0755 -0.0001 29 1 4.1586 -2.0748 0.0081 30 1 0.6096 -3.8535 -1.4364 31 1 0.4925 -2.1311 -1.8706 32 1 2.0464 -2.9850 -2.0268 33 1 3.1545 -6.1357 1.0733 34 1 3.2238 -5.2157 2.5955 35 1 1.0372 -6.1711 3.2714 36 1 0.9686 -7.0908 1.7489 37 1 0.0790 -9.5671 4.3253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813082848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:29 Heat of formation + Delta-G solvation = -92.467318 kcal Electronic energy + Delta-G solvation = -19169.717993 eV Core-core repulsion = 16103.627587 eV Total energy + Delta-G solvation = -3066.090406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91863 -41.02170 -37.96026 -35.65688 -35.51414 -33.62205 -32.98005 -30.72604 -28.86083 -28.08557 -25.57455 -24.47302 -23.25186 -22.11312 -21.32968 -19.19066 -18.37555 -17.77370 -17.35655 -17.18221 -17.02568 -16.46847 -15.79389 -15.55529 -15.06530 -14.79090 -14.47850 -14.27175 -13.94466 -13.82536 -13.63440 -13.52291 -13.35752 -13.21159 -12.86570 -12.57740 -12.48899 -12.18974 -12.01717 -11.88177 -11.74252 -11.42686 -11.24633 -10.58806 -10.42535 -10.41280 -10.00843 -8.20449 -6.33867 0.06467 0.23740 1.21932 1.43339 1.44214 1.57274 1.64375 2.42953 2.76726 3.13597 3.32191 3.67389 3.74527 3.75961 3.89732 3.89977 4.03254 4.25001 4.39024 4.44347 4.47927 4.55001 4.65224 4.68062 4.72809 4.83119 4.88796 5.01264 5.02884 5.18305 5.33877 5.39109 5.47610 5.55013 5.74053 5.80447 6.13148 6.76988 6.85680 7.00040 7.36365 8.92360 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036102 B = 0.003628 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.392236 B = 7715.449493 C = 8114.768084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.036 4.036 3 C -0.167 4.167 4 C 0.094 3.906 5 N -0.515 5.515 6 C 0.110 3.890 7 C -0.154 4.154 8 C 0.126 3.874 9 H 0.085 0.915 10 C -0.159 4.159 11 O -0.351 6.351 12 C 0.468 3.532 13 O -0.539 6.539 14 C -0.095 4.095 15 C 0.039 3.961 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.172 0.828 28 H 0.185 0.815 29 H 0.157 0.843 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.113 0.887 35 H -0.010 1.010 36 H -0.008 1.008 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 20.899 -10.427 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.044 4.044 3 C -0.187 4.187 4 C -0.063 4.063 5 N -0.224 5.224 6 C -0.046 4.046 7 C -0.157 4.157 8 C 0.071 3.929 9 H 0.102 0.898 10 C -0.216 4.216 11 O -0.268 6.268 12 C 0.313 3.687 13 O -0.428 6.428 14 C -0.132 4.132 15 C 0.002 3.998 16 C -0.581 4.581 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.178 1.178 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.189 0.811 28 H 0.202 0.798 29 H 0.174 0.826 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.008 0.992 36 H 0.010 0.990 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.821 20.835 -10.374 23.586 hybrid contribution -1.033 -0.987 0.547 1.530 sum 2.788 19.848 -9.828 22.323 Atomic orbital electron populations 1.21033 0.88667 1.04796 1.03808 1.20436 0.97980 0.91848 0.94104 1.22357 0.95337 0.99191 1.01768 1.23393 0.92744 0.96592 0.93532 1.67773 1.41934 0.99101 1.13602 1.22689 0.91336 0.96654 0.93899 1.20520 0.95621 0.93913 1.05603 1.21408 0.92418 0.83277 0.95842 0.89757 1.22165 1.03132 1.02745 0.93530 1.86546 1.41721 1.33140 1.65385 1.24474 0.87971 0.82055 0.74219 1.90614 1.17608 1.76756 1.57836 1.21529 0.98723 0.91750 1.01233 1.18798 0.94025 0.92677 0.94348 1.21673 0.94165 1.07255 1.35047 0.90542 1.26081 0.96084 1.01183 0.96780 1.70158 1.10145 1.33320 1.43851 0.85276 0.79288 0.77996 0.77724 1.17774 1.20618 1.20565 0.90031 0.87971 0.91060 0.81091 0.79784 0.82577 0.92646 0.88426 0.90683 0.86531 0.86869 0.99176 0.98973 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.31 71.24 0.66 -1.12 16 2 C -0.04 -0.66 5.92 -19.67 -0.12 -0.78 16 3 C -0.17 -2.48 9.82 22.36 0.22 -2.26 16 4 C 0.09 1.64 11.18 84.67 0.95 2.59 16 5 N -0.51 -12.54 10.36 -195.84 -2.03 -14.57 16 6 C 0.11 2.81 10.52 84.69 0.89 3.70 16 7 C -0.15 -3.69 5.09 -19.77 -0.10 -3.79 16 8 C 0.13 3.41 2.10 29.85 0.06 3.47 16 9 H 0.08 2.49 6.11 -2.39 -0.01 2.47 16 10 C -0.16 -3.63 9.37 71.98 0.67 -2.95 16 11 O -0.35 -11.30 8.73 -51.33 -0.45 -11.75 16 12 C 0.47 18.35 7.93 71.24 0.56 18.91 16 13 O -0.54 -24.71 15.20 21.96 0.33 -24.38 16 14 C -0.10 -3.85 5.75 29.85 0.17 -3.67 16 15 C 0.04 2.10 4.26 29.85 0.13 2.23 16 16 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 18 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 19 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 20 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 21 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.10 0.88 8.10 -2.39 -0.02 0.86 16 26 H 0.07 1.08 5.64 -2.39 -0.01 1.07 16 27 H 0.17 1.27 8.06 -2.92 -0.02 1.25 16 28 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.16 4.00 7.34 -2.91 -0.02 3.97 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.71 6.97 -2.39 -0.02 1.70 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 34 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 35 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 36 H -0.01 -0.49 8.10 -2.38 -0.02 -0.51 16 37 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -72.53 317.50 6.03 -66.50 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.06 Total: 9.69 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 4.80 Total: -13.60 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.74 Total: -72.29 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.11 Total: -36.13 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.53 6.03 -66.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813082848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.965 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds