Wall clock time and date at job start Mon Mar 30 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38673 * 120.78697 * 2 1 4 4 C 1.38185 * 119.15889 * 180.23187 * 3 2 1 5 5 N 1.31885 * 120.76747 * 359.78451 * 4 3 2 6 6 C 1.31859 * 121.72374 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.76622 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.42291 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47353 * 214.99786 * 8 7 6 10 10 C 1.52996 * 109.46771 * 94.99669 * 8 7 6 11 11 O 1.45201 * 109.46907 * 335.00247 * 8 7 6 12 12 C 1.34222 * 117.00137 * 209.99697 * 11 8 7 13 13 O 1.20833 * 119.99852 * 0.02562 * 12 11 8 14 14 C 1.50696 * 120.00432 * 179.71953 * 12 11 8 15 15 C 1.52996 * 109.47298 * 180.27351 * 14 12 11 16 16 C 1.50701 * 109.46972 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00292 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00289 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00237 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47189 * 300.00073 * 20 18 16 24 24 H 1.08997 * 109.47316 * 270.24741 * 1 2 3 25 25 H 1.08996 * 109.47165 * 30.25398 * 1 2 3 26 26 H 1.09004 * 109.46665 * 150.25197 * 1 2 3 27 27 H 1.07998 * 120.42165 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.61576 * 179.76870 * 4 3 2 29 29 H 1.08001 * 119.61233 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47062 * 60.00932 * 10 8 7 31 31 H 1.09005 * 109.47320 * 180.02562 * 10 8 7 32 32 H 1.08999 * 109.47835 * 300.00538 * 10 8 7 33 33 H 1.09000 * 109.47190 * 300.28287 * 14 12 11 34 34 H 1.09006 * 109.46468 * 60.27870 * 14 12 11 35 35 H 1.08994 * 109.47515 * 300.00215 * 15 14 12 36 36 H 1.09006 * 109.46938 * 60.00806 * 15 14 12 37 37 H 0.96999 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0049 5 7 4.2403 0.0001 -0.0052 6 6 3.5983 -1.1516 -0.0005 7 6 2.2167 -1.1909 0.0056 8 6 1.4909 -2.5116 0.0116 9 1 0.5756 -2.4259 -0.5740 10 6 1.1414 -2.8949 1.4510 11 8 2.3426 -3.5346 -0.5685 12 6 1.7324 -4.5481 -1.2024 13 8 0.5264 -4.5793 -1.2709 14 6 2.5515 -5.6436 -1.8349 15 6 1.6190 -6.6631 -2.4920 16 6 2.4382 -7.7582 -3.1249 17 1 3.5161 -7.7302 -3.0642 18 6 1.8116 -8.7961 -3.7817 19 7 0.4990 -8.8301 -3.8561 20 14 2.8270 -10.1540 -4.5656 21 1 3.6407 -10.8287 -3.5225 22 1 1.9220 -11.1428 -5.2046 23 1 3.7255 -9.5697 -5.5933 24 1 -0.3634 0.0044 1.0276 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6967 2.1378 0.0004 28 1 4.1583 2.0755 -0.0087 29 1 4.1586 -2.0749 -0.0014 30 1 0.5020 -2.1270 1.8864 31 1 0.6168 -3.8504 1.4554 32 1 2.0567 -2.9806 2.0367 33 1 3.2108 -5.2148 -2.5895 34 1 3.1491 -6.1385 -1.0692 35 1 0.9598 -7.0919 -1.7373 36 1 1.0214 -6.1682 -3.2577 37 1 0.0582 -9.5604 -4.3177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813082849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:32 Heat of formation + Delta-G solvation = -72.906666 kcal Electronic energy + Delta-G solvation = -19169.152990 eV Core-core repulsion = 16103.910797 eV Total energy + Delta-G solvation = -3065.242193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80392 -39.80389 -36.55781 -34.57707 -33.59985 -32.59787 -31.10472 -29.80274 -28.09142 -26.15591 -24.54360 -23.06906 -22.04450 -20.97556 -19.79497 -17.63124 -16.93845 -16.51546 -16.16743 -15.86517 -15.80134 -14.68796 -14.63456 -14.46677 -13.78512 -13.71316 -13.13493 -13.10105 -12.94811 -12.83714 -12.41733 -12.30439 -12.19840 -11.70243 -11.29426 -11.11919 -10.95015 -10.67200 -10.57927 -10.06277 -9.95637 -9.64035 -9.58492 -9.55340 -9.21110 -9.13710 -8.38397 -6.02479 -4.07434 0.90825 1.04845 2.77459 2.97651 3.32698 3.37316 3.39527 3.61036 4.21586 4.43349 4.45923 4.51933 4.64839 4.80716 4.99331 5.04373 5.17827 5.24623 5.28313 5.32995 5.33886 5.55431 5.63163 5.69182 5.80366 5.88686 5.99810 6.10025 6.13950 6.21743 6.52894 6.62958 6.90084 7.64718 7.71487 7.83318 7.96594 8.22464 8.38006 8.99399 9.56706 11.08499 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036001 B = 0.003630 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.575397 B = 7711.766297 C = 8108.900875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.032 4.032 3 C -0.177 4.177 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.128 3.872 7 C -0.139 4.139 8 C 0.127 3.873 9 H 0.097 0.903 10 C -0.162 4.162 11 O -0.359 6.359 12 C 0.459 3.541 13 O -0.504 6.504 14 C -0.103 4.103 15 C 0.034 3.966 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 19.286 10.024 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.040 4.040 3 C -0.197 4.197 4 C -0.058 4.058 5 N -0.198 5.198 6 C -0.029 4.029 7 C -0.141 4.141 8 C 0.071 3.929 9 H 0.115 0.885 10 C -0.219 4.219 11 O -0.278 6.278 12 C 0.302 3.698 13 O -0.390 6.390 14 C -0.141 4.141 15 C -0.004 4.004 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.153 0.847 28 H 0.172 0.828 29 H 0.182 0.818 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.505 19.200 9.942 21.766 hybrid contribution -0.581 -0.647 -0.438 0.974 sum 1.923 18.553 9.504 20.934 Atomic orbital electron populations 1.20959 0.90167 1.03916 1.03158 1.20107 0.96807 0.92125 0.94989 1.21970 0.95647 0.98291 1.03748 1.22796 0.91761 0.96428 0.94846 1.67783 1.41087 0.98415 1.12515 1.22748 0.91050 0.96430 0.92636 1.20587 0.95725 0.94054 1.03778 1.21225 0.93105 0.83267 0.95260 0.88548 1.22146 1.02517 1.02814 0.94444 1.86593 1.41682 1.33316 1.66206 1.24813 0.88763 0.81662 0.74523 1.90623 1.16189 1.75856 1.56375 1.21785 0.99787 0.92385 1.00143 1.19014 0.93818 0.91590 0.95940 1.21121 0.93106 1.07189 1.35360 0.92332 1.25017 0.94919 0.98166 0.96182 1.69980 1.07864 1.32339 1.42632 0.86598 0.79918 0.81555 0.79572 1.20135 1.21260 1.20148 0.90145 0.90700 0.90427 0.84700 0.82795 0.81786 0.91008 0.91009 0.91410 0.88893 0.88844 0.95573 0.95619 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.62 36.01 0.35 -0.68 16 2 C -0.03 -0.33 5.92 -104.31 -0.62 -0.95 16 3 C -0.18 -1.60 9.82 -39.44 -0.39 -1.99 16 4 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 5 N -0.49 -6.25 10.36 -13.25 -0.14 -6.39 16 6 C 0.13 1.66 10.52 -17.55 -0.18 1.47 16 7 C -0.14 -1.72 5.08 -104.48 -0.53 -2.25 16 8 C 0.13 1.72 2.34 -27.88 -0.07 1.66 16 9 H 0.10 1.39 5.29 -51.93 -0.27 1.12 16 10 C -0.16 -1.89 9.53 37.16 0.35 -1.53 16 11 O -0.36 -5.77 8.74 -39.24 -0.34 -6.11 16 12 C 0.46 8.82 7.93 36.00 0.29 9.11 16 13 O -0.50 -11.10 15.20 -18.76 -0.29 -11.38 16 14 C -0.10 -2.09 5.75 -27.89 -0.16 -2.25 16 15 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 16 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 20 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.08 0.71 6.16 -51.93 -0.32 0.39 16 27 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.16 2.06 7.35 -52.49 -0.39 1.68 16 30 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -32.56 319.03 -7.09 -39.65 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.16 Total: -1.47 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.69 Total: -9.32 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.60 Total: -32.55 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.63 Total: -17.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.56 -7.09 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813082849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.258 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds