Wall clock time and date at job start Mon Mar 30 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38673 * 120.78697 * 2 1 4 4 C 1.38185 * 119.15889 * 180.23187 * 3 2 1 5 5 N 1.31885 * 120.76747 * 359.78451 * 4 3 2 6 6 C 1.31859 * 121.72374 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.76622 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.42291 * 180.02562 * 7 6 5 9 9 H 1.08993 * 109.47353 * 214.99786 * 8 7 6 10 10 C 1.52996 * 109.46771 * 94.99669 * 8 7 6 11 11 O 1.45201 * 109.46907 * 335.00247 * 8 7 6 12 12 C 1.34222 * 117.00137 * 209.99697 * 11 8 7 13 13 O 1.20833 * 119.99852 * 0.02562 * 12 11 8 14 14 C 1.50696 * 120.00432 * 179.71953 * 12 11 8 15 15 C 1.52996 * 109.47298 * 180.27351 * 14 12 11 16 16 C 1.50701 * 109.46972 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00292 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00289 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00237 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47189 * 300.00073 * 20 18 16 24 24 H 1.08997 * 109.47316 * 270.24741 * 1 2 3 25 25 H 1.08996 * 109.47165 * 30.25398 * 1 2 3 26 26 H 1.09004 * 109.46665 * 150.25197 * 1 2 3 27 27 H 1.07998 * 120.42165 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.61576 * 179.76870 * 4 3 2 29 29 H 1.08001 * 119.61233 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47062 * 60.00932 * 10 8 7 31 31 H 1.09005 * 109.47320 * 180.02562 * 10 8 7 32 32 H 1.08999 * 109.47835 * 300.00538 * 10 8 7 33 33 H 1.09000 * 109.47190 * 300.28287 * 14 12 11 34 34 H 1.09006 * 109.46468 * 60.27870 * 14 12 11 35 35 H 1.08994 * 109.47515 * 300.00215 * 15 14 12 36 36 H 1.09006 * 109.46938 * 60.00806 * 15 14 12 37 37 H 0.96999 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0049 5 7 4.2403 0.0001 -0.0052 6 6 3.5983 -1.1516 -0.0005 7 6 2.2167 -1.1909 0.0056 8 6 1.4909 -2.5116 0.0116 9 1 0.5756 -2.4259 -0.5740 10 6 1.1414 -2.8949 1.4510 11 8 2.3426 -3.5346 -0.5685 12 6 1.7324 -4.5481 -1.2024 13 8 0.5264 -4.5793 -1.2709 14 6 2.5515 -5.6436 -1.8349 15 6 1.6190 -6.6631 -2.4920 16 6 2.4382 -7.7582 -3.1249 17 1 3.5161 -7.7302 -3.0642 18 6 1.8116 -8.7961 -3.7817 19 7 0.4990 -8.8301 -3.8561 20 14 2.8270 -10.1540 -4.5656 21 1 3.6407 -10.8287 -3.5225 22 1 1.9220 -11.1428 -5.2046 23 1 3.7255 -9.5697 -5.5933 24 1 -0.3634 0.0044 1.0276 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6967 2.1378 0.0004 28 1 4.1583 2.0755 -0.0087 29 1 4.1586 -2.0749 -0.0014 30 1 0.5020 -2.1270 1.8864 31 1 0.6168 -3.8504 1.4554 32 1 2.0567 -2.9806 2.0367 33 1 3.2108 -5.2148 -2.5895 34 1 3.1491 -6.1385 -1.0692 35 1 0.9598 -7.0919 -1.7373 36 1 1.0214 -6.1682 -3.2577 37 1 0.0582 -9.5604 -4.3177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813082849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:31 Heat of formation + Delta-G solvation = -91.767176 kcal Electronic energy + Delta-G solvation = -19169.970843 eV Core-core repulsion = 16103.910797 eV Total energy + Delta-G solvation = -3066.060046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.91722 -41.01925 -37.95681 -35.65546 -35.49899 -33.62673 -32.98034 -30.72936 -28.83370 -28.08796 -25.60132 -24.47105 -23.26056 -22.08933 -21.33781 -19.19549 -18.37024 -17.78264 -17.35584 -17.17300 -17.02119 -16.47580 -15.80351 -15.58746 -15.03506 -14.75796 -14.41375 -14.25680 -13.96940 -13.87586 -13.64072 -13.56081 -13.30361 -13.20518 -12.80544 -12.67713 -12.54326 -12.09809 -11.99996 -11.87354 -11.74427 -11.43869 -11.27526 -10.56942 -10.42614 -10.41568 -10.00906 -8.20073 -6.33808 0.06843 0.24063 1.21812 1.43198 1.47449 1.54696 1.64339 2.43188 2.77254 3.13703 3.32298 3.65963 3.73755 3.75847 3.86090 3.93826 4.02452 4.26169 4.39585 4.44232 4.47548 4.60238 4.62887 4.69273 4.72368 4.82935 4.89792 5.00570 5.03488 5.17882 5.33490 5.40150 5.47311 5.54997 5.74130 5.80279 6.13106 6.76841 6.85419 7.00106 7.36390 8.92319 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036001 B = 0.003630 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.575397 B = 7711.766297 C = 8108.900875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.036 4.036 3 C -0.167 4.167 4 C 0.093 3.907 5 N -0.515 5.515 6 C 0.111 3.889 7 C -0.154 4.154 8 C 0.124 3.876 9 H 0.086 0.914 10 C -0.157 4.157 11 O -0.351 6.351 12 C 0.468 3.532 13 O -0.539 6.539 14 C -0.095 4.095 15 C 0.039 3.961 16 C -0.546 4.546 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.172 0.828 28 H 0.185 0.815 29 H 0.157 0.843 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.117 0.883 35 H -0.008 1.008 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 20.887 10.470 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.044 4.044 3 C -0.186 4.186 4 C -0.063 4.063 5 N -0.224 5.224 6 C -0.046 4.046 7 C -0.157 4.157 8 C 0.069 3.931 9 H 0.104 0.896 10 C -0.214 4.214 11 O -0.268 6.268 12 C 0.313 3.687 13 O -0.428 6.428 14 C -0.132 4.132 15 C 0.002 3.998 16 C -0.584 4.584 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.188 1.188 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.189 0.811 28 H 0.202 0.798 29 H 0.174 0.826 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.829 20.822 10.407 23.591 hybrid contribution -1.008 -0.980 -0.529 1.502 sum 2.821 19.842 9.878 22.344 Atomic orbital electron populations 1.21023 0.88648 1.04150 1.04328 1.20434 0.97997 0.91845 0.94114 1.22350 0.95329 0.99187 1.01782 1.23392 0.92751 0.96585 0.93555 1.67777 1.41934 0.99102 1.13613 1.22683 0.91337 0.96646 0.93888 1.20505 0.95610 0.93929 1.05619 1.21467 0.92503 0.83234 0.95880 0.89607 1.22132 1.03109 1.02738 0.93430 1.86546 1.41756 1.33002 1.65542 1.24470 0.87938 0.82065 0.74238 1.90614 1.17578 1.76798 1.57858 1.21528 0.98760 0.91814 1.01142 1.18786 0.93993 0.92673 0.94327 1.21619 0.94150 1.07530 1.35093 0.90540 1.26080 0.96066 1.01142 0.96781 1.70147 1.10060 1.33448 1.43812 0.85379 0.78169 0.77905 0.78852 1.18713 1.21257 1.18826 0.88426 0.88623 0.92022 0.81098 0.79795 0.82593 0.88463 0.92706 0.90736 0.86877 0.86530 0.98981 0.99203 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.62 71.24 0.69 -1.07 16 2 C -0.04 -0.67 5.92 -19.66 -0.12 -0.78 16 3 C -0.17 -2.48 9.82 22.36 0.22 -2.26 16 4 C 0.09 1.64 11.18 84.67 0.95 2.58 16 5 N -0.51 -12.56 10.36 -195.84 -2.03 -14.59 16 6 C 0.11 2.82 10.52 84.68 0.89 3.71 16 7 C -0.15 -3.69 5.08 -19.77 -0.10 -3.79 16 8 C 0.12 3.37 2.34 29.85 0.07 3.44 16 9 H 0.09 2.53 5.29 -2.39 -0.01 2.52 16 10 C -0.16 -3.59 9.53 71.98 0.69 -2.90 16 11 O -0.35 -11.34 8.74 -51.34 -0.45 -11.79 16 12 C 0.47 18.39 7.93 71.23 0.56 18.95 16 13 O -0.54 -24.77 15.20 21.94 0.33 -24.44 16 14 C -0.10 -3.86 5.75 29.85 0.17 -3.69 16 15 C 0.04 2.14 4.26 29.85 0.13 2.27 16 16 C -0.55 -30.60 9.11 25.60 0.23 -30.37 16 17 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 18 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 19 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 20 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 24 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 26 H 0.06 1.09 6.16 -2.39 -0.01 1.07 16 27 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 28 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 29 H 0.16 4.00 7.35 -2.91 -0.02 3.98 16 30 H 0.10 1.69 8.08 -2.38 -0.02 1.67 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 34 H 0.12 4.18 8.14 -2.38 -0.02 4.17 16 35 H -0.01 -0.50 8.10 -2.39 -0.02 -0.52 16 36 H -0.01 -0.63 8.10 -2.38 -0.02 -0.65 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -72.63 319.03 6.06 -66.56 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.06 Total: 9.85 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.84 Total: -13.60 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.74 Total: -72.40 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.12 Total: -36.23 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -72.63 6.06 -66.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813082849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.203 kcal (2) G-P(sol) polarization free energy of solvation -72.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds