Wall clock time and date at job start Mon Mar 30 2020 07:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34641 * 116.99337 * 2 1 4 4 O 1.21505 * 120.00472 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99389 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99847 * 184.63165 * 5 3 2 7 7 H 1.09005 * 109.46937 * 182.30649 * 6 5 3 8 8 C 1.53002 * 109.47288 * 62.30695 * 6 5 3 9 9 C 1.52995 * 109.47110 * 64.99761 * 8 6 5 10 10 C 1.50700 * 109.47082 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99872 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99813 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00184 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47166 * 90.00107 * 14 12 10 16 16 H 1.48496 * 109.47242 * 209.99789 * 14 12 10 17 17 H 1.48501 * 109.47009 * 330.00078 * 14 12 10 18 18 C 1.50701 * 109.47036 * 302.30496 * 6 5 3 19 19 C 1.38234 * 120.00207 * 320.00155 * 18 6 5 20 20 C 1.38231 * 120.00075 * 179.79001 * 19 18 6 21 21 C 1.38232 * 119.99714 * 0.43977 * 20 19 18 22 22 C 1.38228 * 120.00280 * 359.81261 * 21 20 19 23 23 C 1.38231 * 119.99714 * 140.27572 * 18 6 5 24 24 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47242 * 299.99911 * 1 2 3 26 26 H 1.08994 * 109.46744 * 60.00316 * 1 2 3 27 27 H 0.97002 * 120.00379 * 4.63146 * 5 3 2 28 28 H 1.08998 * 109.46630 * 305.00118 * 8 6 5 29 29 H 1.08999 * 109.47142 * 184.99993 * 8 6 5 30 30 H 1.08999 * 109.47336 * 60.00145 * 9 8 6 31 31 H 1.08999 * 109.47307 * 300.00130 * 9 8 6 32 32 H 0.96998 * 119.99928 * 179.97438 * 13 12 10 33 33 H 1.08007 * 119.99865 * 359.97438 * 19 18 6 34 34 H 1.08000 * 119.99773 * 180.27721 * 20 19 18 35 35 H 1.08003 * 120.00045 * 179.83697 * 21 20 19 36 36 H 1.07998 * 119.99995 * 179.97438 * 22 21 20 37 37 H 1.07996 * 120.00406 * 359.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0744 2.5715 0.1030 7 1 5.1541 2.4330 0.0462 8 6 3.7136 3.2250 1.4385 9 6 4.2825 2.3881 2.5860 10 6 3.9266 3.0315 3.9015 11 1 3.3517 3.9456 3.9175 12 6 4.3349 2.4530 5.0846 13 7 4.0239 3.0143 6.2326 14 14 5.3298 0.8723 5.0569 15 1 6.7774 1.1994 5.0057 16 1 5.0433 0.0855 6.2832 17 1 4.9597 0.0754 3.8597 18 6 3.6213 3.4577 -1.0286 19 6 3.4523 2.9298 -2.2949 20 6 3.0325 3.7418 -3.3319 21 6 2.7906 5.0837 -3.1045 22 6 2.9647 5.6127 -1.8394 23 6 3.3803 4.7998 -0.8014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 3.9374 0.4595 -0.0669 28 1 2.6293 3.2825 1.5336 29 1 4.1355 4.2293 1.4773 30 1 5.3668 2.3305 2.4909 31 1 3.8606 1.3839 2.5472 32 1 4.3108 2.6071 7.0650 33 1 3.6453 1.8822 -2.4734 34 1 2.8961 3.3283 -4.3202 35 1 2.4652 5.7187 -3.9152 36 1 2.7761 6.6612 -1.6619 37 1 3.5162 5.2131 0.1870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817324633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:41 Heat of formation + Delta-G solvation = -56.707191 kcal Electronic energy + Delta-G solvation = -20033.751258 eV Core-core repulsion = 16969.211527 eV Total energy + Delta-G solvation = -3064.539731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44959 -39.00259 -36.78090 -35.14218 -33.20675 -31.79404 -30.70390 -30.39205 -27.66528 -26.47778 -23.80995 -22.39940 -21.71648 -20.65349 -19.57795 -18.64416 -17.08647 -16.72068 -16.22876 -16.06500 -15.26378 -14.82908 -14.55043 -14.23435 -13.73608 -13.44265 -13.25579 -13.08213 -12.68739 -12.61777 -12.44174 -11.93412 -11.83890 -11.26623 -11.12305 -10.89494 -10.68439 -10.54282 -10.36303 -9.85008 -9.82831 -9.63844 -9.18415 -8.88053 -8.68374 -8.51540 -8.40232 -6.02212 -3.99752 1.54469 1.63486 2.51234 3.20720 3.29988 3.37683 3.40503 3.99977 4.45893 4.53615 4.92967 5.08252 5.16501 5.26794 5.30609 5.32313 5.35215 5.44441 5.60980 5.62812 5.75275 5.84704 6.10112 6.20064 6.32161 6.49374 6.54108 6.63889 6.67889 6.74401 6.89055 6.94100 7.21887 7.31917 7.45409 7.71668 7.81535 8.56793 8.68254 9.03632 9.60116 11.11469 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.006369 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.841819 B = 4394.981957 C = 5255.823744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.379 6.379 3 C 0.648 3.352 4 O -0.554 6.554 5 N -0.700 5.700 6 C 0.200 3.800 7 H 0.105 0.895 8 C -0.123 4.123 9 C -0.011 4.011 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.266 1.266 18 C -0.073 4.073 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.121 4.121 23 C -0.099 4.099 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.404 0.596 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.015 0.985 32 H 0.262 0.738 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -3.284 -18.482 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.293 6.293 3 C 0.400 3.600 4 O -0.441 6.441 5 N -0.358 5.358 6 C 0.097 3.903 7 H 0.122 0.878 8 C -0.161 4.161 9 C -0.048 4.048 10 C -0.555 4.555 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.191 1.191 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.118 4.118 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.238 0.762 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.205 -2.827 -18.261 18.610 hybrid contribution 0.529 -1.190 0.172 1.314 sum -1.675 -4.017 -18.089 18.605 Atomic orbital electron populations 1.23103 0.74936 1.02924 1.02650 1.86214 1.23858 1.31849 1.87412 1.18130 0.83595 0.82015 0.76262 1.90999 1.64368 1.34420 1.54316 1.44619 1.02890 1.10363 1.77884 1.20096 0.95607 0.80267 0.94362 0.87764 1.22057 1.03203 0.99311 0.91480 1.19559 0.95198 0.95818 0.94227 1.21131 1.34718 1.10769 0.88889 0.91078 1.25038 0.95824 0.97198 0.95498 1.69922 1.46878 1.40115 0.97436 0.86777 0.80672 0.84213 0.77592 1.20327 1.21480 1.19083 1.20118 0.98602 0.94545 0.94165 1.20850 1.00139 0.99260 0.92597 1.20990 1.00704 0.94102 0.98585 1.21044 1.01209 0.95369 0.97029 1.21113 0.99996 0.99683 0.93086 1.21239 0.97797 0.93259 0.99481 0.88471 0.91728 0.92248 0.76190 0.90342 0.91158 0.97263 0.96646 0.92812 0.86901 0.86791 0.86731 0.86325 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 10.56 101.05 1.07 1.78 16 2 O -0.38 -5.85 10.62 -40.33 -0.43 -6.28 16 3 C 0.65 11.29 7.78 54.06 0.42 11.71 16 4 O -0.55 -11.20 13.41 -19.28 -0.26 -11.46 16 5 N -0.70 -10.73 4.05 -59.86 -0.24 -10.97 16 6 C 0.20 3.18 3.00 -69.08 -0.21 2.98 16 7 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 8 C -0.12 -2.46 3.72 -26.73 -0.10 -2.55 16 9 C -0.01 -0.25 3.93 -27.89 -0.11 -0.36 16 10 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 11 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 12 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 14 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 18 C -0.07 -1.14 4.02 -104.63 -0.42 -1.56 16 19 C -0.11 -1.54 8.94 -39.59 -0.35 -1.90 16 20 C -0.13 -1.61 10.05 -39.59 -0.40 -2.01 16 21 C -0.13 -1.62 10.05 -39.59 -0.40 -2.02 16 22 C -0.12 -1.65 10.05 -39.59 -0.40 -2.04 16 23 C -0.10 -1.54 9.12 -39.58 -0.36 -1.90 16 24 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.40 5.03 8.94 -40.82 -0.36 4.67 16 28 H 0.08 1.78 6.38 -51.93 -0.33 1.45 16 29 H 0.07 1.36 6.35 -51.93 -0.33 1.03 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 31 H 0.02 0.37 6.81 -51.93 -0.35 0.02 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.11 1.43 7.72 -52.48 -0.41 1.02 16 34 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.13 2.05 5.86 -52.49 -0.31 1.75 16 LS Contribution 309.25 15.07 4.66 4.66 Total: -1.00 -34.34 309.25 -6.88 -41.22 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.03 Total: 4.48 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.69 Total: -11.29 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.53 Total: -38.45 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.69 Total: -17.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.34 -6.88 -41.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817324633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.483 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds