Wall clock time and date at job start Mon Mar 30 2020 07:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34641 * 116.99337 * 2 1 4 4 O 1.21505 * 120.00472 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99389 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99847 * 184.63165 * 5 3 2 7 7 H 1.09005 * 109.46937 * 182.30649 * 6 5 3 8 8 C 1.53002 * 109.47288 * 62.30695 * 6 5 3 9 9 C 1.52995 * 109.47110 * 64.99761 * 8 6 5 10 10 C 1.50700 * 109.47082 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99872 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99813 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00184 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47166 * 90.00107 * 14 12 10 16 16 H 1.48496 * 109.47242 * 209.99789 * 14 12 10 17 17 H 1.48501 * 109.47009 * 330.00078 * 14 12 10 18 18 C 1.50701 * 109.47036 * 302.30496 * 6 5 3 19 19 C 1.38234 * 120.00207 * 320.00155 * 18 6 5 20 20 C 1.38231 * 120.00075 * 179.79001 * 19 18 6 21 21 C 1.38232 * 119.99714 * 0.43977 * 20 19 18 22 22 C 1.38228 * 120.00280 * 359.81261 * 21 20 19 23 23 C 1.38231 * 119.99714 * 140.27572 * 18 6 5 24 24 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47242 * 299.99911 * 1 2 3 26 26 H 1.08994 * 109.46744 * 60.00316 * 1 2 3 27 27 H 0.97002 * 120.00379 * 4.63146 * 5 3 2 28 28 H 1.08998 * 109.46630 * 305.00118 * 8 6 5 29 29 H 1.08999 * 109.47142 * 184.99993 * 8 6 5 30 30 H 1.08999 * 109.47336 * 60.00145 * 9 8 6 31 31 H 1.08999 * 109.47307 * 300.00130 * 9 8 6 32 32 H 0.96998 * 119.99928 * 179.97438 * 13 12 10 33 33 H 1.08007 * 119.99865 * 359.97438 * 19 18 6 34 34 H 1.08000 * 119.99773 * 180.27721 * 20 19 18 35 35 H 1.08003 * 120.00045 * 179.83697 * 21 20 19 36 36 H 1.07998 * 119.99995 * 179.97438 * 22 21 20 37 37 H 1.07996 * 120.00406 * 359.97438 * 23 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0744 2.5715 0.1030 7 1 5.1541 2.4330 0.0462 8 6 3.7136 3.2250 1.4385 9 6 4.2825 2.3881 2.5860 10 6 3.9266 3.0315 3.9015 11 1 3.3517 3.9456 3.9175 12 6 4.3349 2.4530 5.0846 13 7 4.0239 3.0143 6.2326 14 14 5.3298 0.8723 5.0569 15 1 6.7774 1.1994 5.0057 16 1 5.0433 0.0855 6.2832 17 1 4.9597 0.0754 3.8597 18 6 3.6213 3.4577 -1.0286 19 6 3.4523 2.9298 -2.2949 20 6 3.0325 3.7418 -3.3319 21 6 2.7906 5.0837 -3.1045 22 6 2.9647 5.6127 -1.8394 23 6 3.3803 4.7998 -0.8014 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 3.9374 0.4595 -0.0669 28 1 2.6293 3.2825 1.5336 29 1 4.1355 4.2293 1.4773 30 1 5.3668 2.3305 2.4909 31 1 3.8606 1.3839 2.5472 32 1 4.3108 2.6071 7.0650 33 1 3.6453 1.8822 -2.4734 34 1 2.8961 3.3283 -4.3202 35 1 2.4652 5.7187 -3.9152 36 1 2.7761 6.6612 -1.6619 37 1 3.5162 5.2131 0.1870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817324633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:41 Heat of formation + Delta-G solvation = -79.686355 kcal Electronic energy + Delta-G solvation = -20034.747709 eV Core-core repulsion = 16969.211527 eV Total energy + Delta-G solvation = -3065.536182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71717 -40.12264 -37.99953 -36.57449 -35.16742 -33.38830 -32.00835 -31.64234 -28.89433 -27.94889 -25.33915 -23.68631 -22.90224 -22.20294 -20.92957 -19.94651 -18.96571 -18.14239 -17.50965 -17.23975 -16.54441 -16.32344 -15.86766 -15.70499 -14.94960 -14.76399 -14.69883 -14.47019 -14.25388 -14.00787 -13.85606 -13.32232 -12.96285 -12.86842 -12.71951 -12.21218 -11.95158 -11.86776 -11.74469 -11.70638 -11.60771 -11.30060 -11.27623 -10.75456 -10.19710 -9.73634 -9.50434 -8.28919 -6.33491 0.48463 0.58120 1.33663 1.35392 1.38765 1.50357 1.88424 2.36801 2.93711 3.06491 3.40911 3.75641 4.00850 4.15177 4.21643 4.31611 4.36468 4.37578 4.39013 4.57801 4.66882 4.70227 4.77661 4.88121 5.05373 5.14860 5.18661 5.25424 5.42726 5.49835 5.61362 5.63474 5.66339 5.68489 5.80165 6.19092 6.29515 6.50350 6.74574 7.30629 7.43086 8.88522 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.006369 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.841819 B = 4394.981957 C = 5255.823744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.379 6.379 3 C 0.641 3.359 4 O -0.589 6.589 5 N -0.689 5.689 6 C 0.207 3.793 7 H 0.135 0.865 8 C -0.111 4.111 9 C -0.003 4.003 10 C -0.533 4.533 11 H 0.021 0.979 12 C 0.000 4.000 13 N -0.955 5.955 14 Si 0.956 3.044 15 H -0.260 1.260 16 H -0.288 1.288 17 H -0.242 1.242 18 C -0.088 4.088 19 C -0.116 4.116 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.126 4.126 24 H 0.137 0.863 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.420 0.580 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -5.439 -21.049 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.293 6.293 3 C 0.394 3.606 4 O -0.479 6.479 5 N -0.349 5.349 6 C 0.104 3.896 7 H 0.152 0.848 8 C -0.149 4.149 9 C -0.040 4.040 10 C -0.571 4.571 11 H 0.040 0.960 12 C -0.196 4.196 13 N -0.596 5.596 14 Si 0.779 3.221 15 H -0.185 1.185 16 H -0.214 1.214 17 H -0.165 1.165 18 C -0.089 4.089 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.145 4.145 24 H 0.155 0.845 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.257 0.743 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.050 -5.002 -20.855 21.472 hybrid contribution 0.047 -0.409 0.977 1.060 sum -1.003 -5.411 -19.879 20.626 Atomic orbital electron populations 1.23408 0.73339 1.05375 1.02081 1.86224 1.25433 1.30606 1.87056 1.18401 0.84144 0.82109 0.75907 1.90982 1.65286 1.35728 1.55864 1.44557 1.02412 1.10878 1.77010 1.19980 0.97177 0.80390 0.92050 0.84760 1.21831 1.00664 0.99338 0.93111 1.19465 0.96364 0.95649 0.92543 1.21504 1.34101 1.09597 0.91936 0.96011 1.26117 0.97200 1.01612 0.94715 1.70098 1.48673 1.42426 0.98439 0.85576 0.79267 0.78865 0.78439 1.18508 1.21382 1.16530 1.20082 0.99784 0.94336 0.94708 1.21044 1.00029 1.00183 0.92190 1.21389 0.99419 0.94107 0.99581 1.21424 1.00093 0.95910 0.97210 1.21373 0.99659 1.00446 0.93304 1.21285 0.99582 0.94080 0.99521 0.84487 0.93398 0.91798 0.74266 0.93807 0.91403 0.95194 0.96521 0.92577 0.85473 0.83905 0.83816 0.84798 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.20 10.56 113.37 1.20 2.39 16 2 O -0.38 -11.10 10.62 -55.50 -0.59 -11.69 16 3 C 0.64 21.80 7.78 129.79 1.01 22.81 16 4 O -0.59 -24.06 13.41 19.82 0.27 -23.79 16 5 N -0.69 -19.86 4.05 -573.71 -2.32 -22.19 16 6 C 0.21 6.35 3.00 44.25 0.13 6.48 16 7 H 0.13 3.30 8.14 -2.38 -0.02 3.28 16 8 C -0.11 -4.54 3.72 30.59 0.11 -4.43 16 9 C 0.00 -0.13 3.93 29.85 0.12 -0.02 16 10 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16 11 H 0.02 1.45 7.99 -2.91 -0.02 1.43 16 12 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 13 N -0.96 -61.57 13.96 21.45 0.30 -61.28 16 14 Si 0.96 44.29 27.47 68.60 1.88 46.18 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 18 C -0.09 -2.66 4.02 -19.87 -0.08 -2.74 16 19 C -0.12 -3.01 8.94 22.27 0.20 -2.81 16 20 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 21 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 22 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 23 C -0.13 -3.96 9.12 22.27 0.20 -3.75 16 24 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.42 9.21 8.94 -92.71 -0.83 8.38 16 28 H 0.04 2.09 6.38 -2.39 -0.02 2.07 16 29 H 0.07 2.75 6.35 -2.39 -0.02 2.73 16 30 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 31 H 0.02 0.77 6.81 -2.39 -0.02 0.75 16 32 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 33 H 0.13 2.84 7.72 -2.91 -0.02 2.82 16 34 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.12 3.84 5.86 -2.91 -0.02 3.82 16 Total: -1.00 -77.31 309.25 4.00 -73.31 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.19 Total: 21.23 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 4.28 Total: -21.77 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -2.02 Total: -83.46 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.32 Total: -35.49 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -77.31 4.00 -73.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817324633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.374 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds