Wall clock time and date at job start Mon Mar 30 2020 07:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34633 * 116.99785 * 2 1 4 4 O 1.21507 * 120.00115 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00215 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00443 * 184.97296 * 5 3 2 7 7 H 1.08996 * 109.46983 * 34.43701 * 6 5 3 8 8 C 1.53002 * 109.47005 * 154.43719 * 6 5 3 9 9 C 1.53006 * 109.47194 * 294.99880 * 8 6 5 10 10 C 1.50691 * 109.47082 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00310 * 359.72355 * 10 9 8 12 12 C 1.37878 * 120.00132 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99768 * 359.72390 * 12 10 9 14 14 Si 1.86793 * 120.00165 * 179.72463 * 12 10 9 15 15 H 1.48500 * 109.47254 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47519 * 119.99885 * 14 12 10 17 17 H 1.48502 * 109.47282 * 239.99900 * 14 12 10 18 18 C 1.50700 * 109.46911 * 274.43594 * 6 5 3 19 19 C 1.38225 * 119.99965 * 318.51259 * 18 6 5 20 20 C 1.38244 * 120.00009 * 179.81128 * 19 18 6 21 21 C 1.38233 * 119.99403 * 0.39651 * 20 19 18 22 22 C 1.38235 * 120.00258 * 359.85509 * 21 20 19 23 23 C 1.38230 * 119.99875 * 359.96113 * 22 21 20 24 24 H 1.08998 * 109.47265 * 300.00722 * 1 2 3 25 25 H 1.09004 * 109.46659 * 60.00869 * 1 2 3 26 26 H 1.08994 * 109.46870 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99470 * 4.96451 * 5 3 2 28 28 H 1.09003 * 109.46841 * 175.00497 * 8 6 5 29 29 H 1.08993 * 109.47349 * 55.00380 * 8 6 5 30 30 H 1.08995 * 109.46913 * 60.00210 * 9 8 6 31 31 H 1.09000 * 109.46774 * 300.00181 * 9 8 6 32 32 H 0.96995 * 119.99638 * 180.02562 * 13 12 10 33 33 H 1.08006 * 120.00595 * 0.02562 * 19 18 6 34 34 H 1.07997 * 120.00164 * 180.23677 * 20 19 18 35 35 H 1.08004 * 119.99470 * 179.83405 * 21 20 19 36 36 H 1.08003 * 119.99787 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.99704 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0745 2.5708 0.1095 7 1 3.4873 3.2261 0.7528 8 6 5.4685 2.3812 0.7108 9 6 5.3392 1.8700 2.1472 10 6 6.7122 1.6838 2.7397 11 1 7.5895 1.9035 2.1492 12 6 6.8486 1.2272 4.0334 13 7 5.7803 0.9592 4.7523 14 14 8.5506 0.9891 4.7653 15 1 9.5783 1.3578 3.7587 16 1 8.6992 1.8526 5.9643 17 1 8.7276 -0.4330 5.1545 18 6 4.1977 3.1893 -1.2592 19 6 4.5523 2.4066 -2.3420 20 6 4.6615 2.9732 -3.5982 21 6 4.4242 4.3241 -3.7700 22 6 4.0747 5.1078 -2.6863 23 6 3.9618 4.5405 -1.4309 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 3.9372 0.4599 -0.0736 28 1 5.9970 3.3345 0.7108 29 1 6.0254 1.6571 0.1162 30 1 4.8107 0.9167 2.1473 31 1 4.7824 2.5942 2.7417 32 1 5.8763 0.6383 5.6625 33 1 4.7406 1.3516 -2.2072 34 1 4.9347 2.3609 -4.4449 35 1 4.5121 4.7673 -4.7510 36 1 3.8897 6.1634 -2.8205 37 1 3.6892 5.1529 -0.5841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817324634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:44 Heat of formation + Delta-G solvation = -70.498336 kcal Electronic energy + Delta-G solvation = -19548.088929 eV Core-core repulsion = 16482.951169 eV Total energy + Delta-G solvation = -3065.137760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29769 -39.09042 -36.73544 -35.36256 -33.21822 -31.61529 -30.70592 -30.35589 -27.59058 -26.29910 -23.69110 -22.50903 -21.59974 -20.90036 -20.00708 -18.40515 -17.00240 -16.66750 -16.18347 -16.11081 -15.09811 -15.07236 -14.48504 -14.00501 -13.87155 -13.60334 -13.21392 -13.02855 -12.79088 -12.57054 -12.12937 -11.92110 -11.75676 -11.16529 -10.98680 -10.95693 -10.68909 -10.58662 -10.51888 -10.34438 -9.90702 -9.62014 -9.16587 -8.85979 -8.73855 -8.46903 -8.37861 -6.02737 -4.05941 1.50044 1.57388 2.52071 3.15002 3.29405 3.37328 3.40938 3.95879 4.43430 4.59563 4.98543 5.04187 5.12454 5.24426 5.27288 5.31671 5.33259 5.53002 5.58123 5.64749 5.75679 5.83725 6.10736 6.18295 6.26003 6.49341 6.53549 6.62505 6.64266 6.73838 6.92258 6.94256 7.16486 7.63305 7.72925 7.75742 7.96116 8.36643 8.65034 9.01348 9.58691 11.08261 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.005822 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.324190 B = 4808.444930 C = 6208.782826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.374 6.374 3 C 0.648 3.352 4 O -0.576 6.576 5 N -0.690 5.690 6 C 0.200 3.800 7 H 0.096 0.904 8 C -0.113 4.113 9 C 0.022 3.978 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.083 4.083 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.104 4.104 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.408 0.592 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.302 1.566 -14.485 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.288 6.288 3 C 0.400 3.600 4 O -0.465 6.465 5 N -0.347 5.347 6 C 0.097 3.903 7 H 0.114 0.886 8 C -0.151 4.151 9 C -0.015 4.015 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.084 4.084 19 C -0.124 4.124 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.122 4.122 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.243 0.757 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.753 1.969 -14.279 15.917 hybrid contribution 0.956 -0.503 0.483 1.184 sum -5.796 1.466 -13.796 15.036 Atomic orbital electron populations 1.23111 0.75027 1.03033 1.02475 1.86248 1.23756 1.31543 1.87283 1.18162 0.83714 0.81940 0.76147 1.90961 1.64702 1.34834 1.56003 1.44727 1.02557 1.10985 1.76473 1.20156 0.95798 0.82287 0.92099 0.88621 1.22019 0.91225 1.02007 0.99862 1.19128 0.97268 0.96580 0.88545 1.21251 0.92552 1.44206 0.98046 0.92553 1.25018 0.96604 0.95489 0.97248 1.69980 1.28243 1.45384 1.09607 0.86552 0.84626 0.77744 0.79171 1.19727 1.21023 1.21040 1.20391 0.97956 0.94120 0.95914 1.20934 0.99366 0.99768 0.92356 1.21075 1.00889 0.95213 0.97050 1.21068 1.00895 0.94181 0.98564 1.21078 1.00431 0.99619 0.92868 1.21030 0.99215 0.94558 0.97418 0.91925 0.92236 0.88337 0.75670 0.91000 0.92253 0.96161 0.96464 0.93026 0.86355 0.86463 0.86579 0.86318 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 10.56 101.05 1.07 1.76 16 2 O -0.37 -5.89 10.62 -40.31 -0.43 -6.32 16 3 C 0.65 11.62 8.70 54.05 0.47 12.09 16 4 O -0.58 -11.68 15.84 -19.28 -0.31 -11.98 16 5 N -0.69 -11.63 3.83 -59.87 -0.23 -11.86 16 6 C 0.20 3.48 2.14 -69.08 -0.15 3.33 16 7 H 0.10 1.83 7.48 -51.93 -0.39 1.44 16 8 C -0.11 -2.18 4.66 -26.73 -0.12 -2.30 16 9 C 0.02 0.54 4.86 -27.88 -0.14 0.40 16 10 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 C -0.08 -1.30 4.92 -104.63 -0.51 -1.81 16 19 C -0.11 -1.51 9.32 -39.58 -0.37 -1.88 16 20 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 21 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 23 C -0.10 -1.53 9.67 -39.59 -0.38 -1.91 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.41 6.26 8.72 -40.82 -0.36 5.90 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.02 0.52 7.75 -51.93 -0.40 0.12 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.12 1.56 7.76 -52.48 -0.41 1.15 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.12 1.71 8.03 -52.48 -0.42 1.29 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -32.48 322.77 -7.44 -39.93 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.32 Total: 4.16 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.74 Total: -9.30 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.51 Total: -37.66 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.73 Total: -18.30 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.48 -7.44 -39.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817324634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.572 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds