Wall clock time and date at job start Mon Mar 30 2020 07:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34633 * 116.99785 * 2 1 4 4 O 1.21507 * 120.00115 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00215 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00443 * 184.97296 * 5 3 2 7 7 H 1.08996 * 109.46983 * 34.43701 * 6 5 3 8 8 C 1.53002 * 109.47005 * 154.43719 * 6 5 3 9 9 C 1.53006 * 109.47194 * 294.99880 * 8 6 5 10 10 C 1.50691 * 109.47082 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00310 * 359.72355 * 10 9 8 12 12 C 1.37878 * 120.00132 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99768 * 359.72390 * 12 10 9 14 14 Si 1.86793 * 120.00165 * 179.72463 * 12 10 9 15 15 H 1.48500 * 109.47254 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47519 * 119.99885 * 14 12 10 17 17 H 1.48502 * 109.47282 * 239.99900 * 14 12 10 18 18 C 1.50700 * 109.46911 * 274.43594 * 6 5 3 19 19 C 1.38225 * 119.99965 * 318.51259 * 18 6 5 20 20 C 1.38244 * 120.00009 * 179.81128 * 19 18 6 21 21 C 1.38233 * 119.99403 * 0.39651 * 20 19 18 22 22 C 1.38235 * 120.00258 * 359.85509 * 21 20 19 23 23 C 1.38230 * 119.99875 * 359.96113 * 22 21 20 24 24 H 1.08998 * 109.47265 * 300.00722 * 1 2 3 25 25 H 1.09004 * 109.46659 * 60.00869 * 1 2 3 26 26 H 1.08994 * 109.46870 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99470 * 4.96451 * 5 3 2 28 28 H 1.09003 * 109.46841 * 175.00497 * 8 6 5 29 29 H 1.08993 * 109.47349 * 55.00380 * 8 6 5 30 30 H 1.08995 * 109.46913 * 60.00210 * 9 8 6 31 31 H 1.09000 * 109.46774 * 300.00181 * 9 8 6 32 32 H 0.96995 * 119.99638 * 180.02562 * 13 12 10 33 33 H 1.08006 * 120.00595 * 0.02562 * 19 18 6 34 34 H 1.07997 * 120.00164 * 180.23677 * 20 19 18 35 35 H 1.08004 * 119.99470 * 179.83405 * 21 20 19 36 36 H 1.08003 * 119.99787 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.99704 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0745 2.5708 0.1095 7 1 3.4873 3.2261 0.7528 8 6 5.4685 2.3812 0.7108 9 6 5.3392 1.8700 2.1472 10 6 6.7122 1.6838 2.7397 11 1 7.5895 1.9035 2.1492 12 6 6.8486 1.2272 4.0334 13 7 5.7803 0.9592 4.7523 14 14 8.5506 0.9891 4.7653 15 1 9.5783 1.3578 3.7587 16 1 8.6992 1.8526 5.9643 17 1 8.7276 -0.4330 5.1545 18 6 4.1977 3.1893 -1.2592 19 6 4.5523 2.4066 -2.3420 20 6 4.6615 2.9732 -3.5982 21 6 4.4242 4.3241 -3.7700 22 6 4.0747 5.1078 -2.6863 23 6 3.9618 4.5405 -1.4309 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 3.9372 0.4599 -0.0736 28 1 5.9970 3.3345 0.7108 29 1 6.0254 1.6571 0.1162 30 1 4.8107 0.9167 2.1473 31 1 4.7824 2.5942 2.7417 32 1 5.8763 0.6383 5.6625 33 1 4.7406 1.3516 -2.2072 34 1 4.9347 2.3609 -4.4449 35 1 4.5121 4.7673 -4.7510 36 1 3.8897 6.1634 -2.8205 37 1 3.6892 5.1529 -0.5841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817324634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:44 Heat of formation + Delta-G solvation = -90.201824 kcal Electronic energy + Delta-G solvation = -19548.943336 eV Core-core repulsion = 16482.951169 eV Total energy + Delta-G solvation = -3065.992167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64189 -40.21917 -38.01732 -36.84387 -35.18794 -33.12644 -31.87651 -31.70240 -28.81232 -27.84582 -25.37297 -23.58563 -22.81862 -22.56831 -21.38475 -19.78385 -18.54965 -18.13490 -17.75640 -17.30480 -16.54620 -16.34812 -16.07760 -15.28434 -15.15326 -14.79075 -14.56697 -14.37327 -14.20701 -13.90104 -13.76739 -13.38359 -12.96258 -12.88129 -12.54312 -12.45484 -12.15021 -11.93966 -11.86587 -11.78894 -11.61059 -11.46821 -11.20240 -10.55836 -10.25995 -9.76971 -9.59294 -8.18407 -6.29506 0.43670 0.54866 1.26001 1.41370 1.42240 1.54984 1.74149 2.42138 2.90709 3.15529 3.36044 3.76817 3.94658 4.15330 4.21826 4.32167 4.32297 4.35252 4.36184 4.61820 4.66770 4.67125 4.75937 4.94656 5.09053 5.12760 5.17164 5.23485 5.39370 5.52280 5.60592 5.64271 5.67666 5.79304 5.85618 6.15425 6.23784 6.38890 6.88183 7.28313 7.40168 8.93321 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.005822 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.324190 B = 4808.444930 C = 6208.782826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.378 6.378 3 C 0.645 3.355 4 O -0.605 6.605 5 N -0.686 5.686 6 C 0.211 3.789 7 H 0.069 0.931 8 C -0.095 4.095 9 C 0.028 3.972 10 C -0.539 4.539 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.963 3.037 15 H -0.260 1.260 16 H -0.282 1.282 17 H -0.279 1.279 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.125 4.125 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.138 0.862 27 H 0.415 0.585 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.002 0.998 31 H -0.017 1.017 32 H 0.262 0.738 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 1.406 -16.556 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.291 6.291 3 C 0.398 3.602 4 O -0.496 6.496 5 N -0.344 5.344 6 C 0.107 3.893 7 H 0.087 0.913 8 C -0.133 4.133 9 C -0.009 4.009 10 C -0.577 4.577 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.788 3.212 15 H -0.184 1.184 16 H -0.208 1.208 17 H -0.205 1.205 18 C -0.104 4.104 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.251 0.749 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.020 0.980 31 H 0.001 0.999 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.683 1.794 -16.367 17.418 hybrid contribution 0.545 -0.452 1.084 1.295 sum -5.138 1.342 -15.283 16.179 Atomic orbital electron populations 1.23489 0.72871 1.05618 1.02437 1.86259 1.25875 1.30131 1.86874 1.18299 0.83854 0.82243 0.75795 1.90931 1.65336 1.35954 1.57400 1.44688 1.02544 1.11137 1.76036 1.19832 0.93974 0.82242 0.93222 0.91277 1.21748 0.92834 1.02087 0.96603 1.18982 0.95635 0.94843 0.91427 1.21706 0.93734 1.43694 0.98518 0.91786 1.25953 1.00755 0.95178 0.97858 1.70119 1.30768 1.46499 1.10043 0.85425 0.79700 0.77726 0.78348 1.18357 1.20776 1.20492 1.20216 1.00326 0.94783 0.95059 1.21102 0.99604 1.00091 0.92761 1.21441 0.99859 0.95935 0.97059 1.21505 0.99068 0.93976 0.99728 1.21398 0.99614 1.01060 0.92128 1.21189 1.00162 0.94400 0.98592 0.92634 0.91681 0.84432 0.74878 0.90803 0.90811 0.98000 0.99890 0.92919 0.85745 0.83676 0.83312 0.83881 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.13 10.56 113.37 1.20 2.33 16 2 O -0.38 -11.84 10.62 -55.42 -0.59 -12.43 16 3 C 0.64 23.66 8.70 129.79 1.13 24.78 16 4 O -0.60 -25.27 15.84 19.82 0.31 -24.96 16 5 N -0.69 -23.72 3.83 -573.74 -2.19 -25.91 16 6 C 0.21 7.59 2.14 44.25 0.09 7.69 16 7 H 0.07 2.83 7.48 -2.39 -0.02 2.81 16 8 C -0.09 -3.72 4.66 30.60 0.14 -3.58 16 9 C 0.03 1.45 4.86 29.85 0.15 1.59 16 10 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 11 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 14 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 C -0.10 -3.22 4.92 -19.87 -0.10 -3.32 16 19 C -0.12 -3.19 9.32 22.27 0.21 -2.98 16 20 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 21 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 22 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 23 C -0.12 -3.66 9.67 22.27 0.22 -3.45 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.41 12.93 8.72 -92.71 -0.81 12.12 16 28 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.00 0.09 7.75 -2.39 -0.02 0.07 16 31 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.12 3.12 7.76 -2.91 -0.02 3.09 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.12 3.42 8.03 -2.91 -0.02 3.40 16 Total: -1.00 -70.98 322.77 4.49 -66.49 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.25 Total: 21.18 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 4.40 Total: -13.71 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -1.91 Total: -82.39 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.27 Total: -37.39 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.98 4.49 -66.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817324634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.713 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds