Wall clock time and date at job start Mon Mar 30 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47280 * 2 1 4 4 N 1.29391 * 120.00116 * 274.99793 * 3 2 1 5 5 O 1.41605 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.42895 * 114.00101 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47271 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46898 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00371 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99765 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00056 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 120.00034 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46842 * 89.99880 * 12 10 8 14 14 H 1.48493 * 109.47201 * 209.99960 * 12 10 8 15 15 H 1.48501 * 109.47166 * 330.00206 * 12 10 8 16 16 C 1.47536 * 120.00083 * 94.99509 * 3 2 1 17 17 C 1.39699 * 120.08989 * 359.72642 * 16 3 2 18 18 C 1.37783 * 119.90033 * 179.73823 * 17 16 3 19 19 C 1.38917 * 120.09783 * 0.51325 * 18 17 16 20 20 O 1.35804 * 119.91018 * 179.73891 * 19 18 17 21 21 C 1.38918 * 120.18205 * 359.76510 * 19 18 17 22 22 C 1.37782 * 120.09628 * 359.97438 * 21 19 18 23 23 H 1.08999 * 109.47454 * 300.00341 * 1 2 3 24 24 H 1.09001 * 109.46631 * 60.00107 * 1 2 3 25 25 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47454 * 239.99659 * 2 1 3 27 27 H 1.09007 * 109.46658 * 119.99432 * 2 1 3 28 28 H 1.09004 * 109.47062 * 300.00789 * 6 5 4 29 29 H 1.09004 * 109.46926 * 60.00371 * 6 5 4 30 30 H 1.09001 * 109.46712 * 300.00106 * 7 6 5 31 31 H 1.08993 * 109.47000 * 59.99693 * 7 6 5 32 32 H 0.96999 * 119.99683 * 180.02562 * 11 10 8 33 33 H 1.07998 * 120.04783 * 359.97369 * 17 16 3 34 34 H 1.08007 * 119.94829 * 180.25402 * 18 17 16 35 35 H 0.96701 * 113.99737 * 270.02533 * 20 19 18 36 36 H 1.07998 * 119.95345 * 179.97438 * 21 19 18 37 37 H 1.08001 * 120.04725 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1560 2.0633 -1.1163 5 8 1.8197 1.4312 -2.3380 6 6 2.0052 2.2565 -3.4897 7 6 1.6125 1.4755 -4.7454 8 6 1.8088 2.3457 -5.9600 9 1 2.1764 3.3549 -5.8476 10 6 1.5190 1.8533 -7.2149 11 7 1.6908 2.6125 -8.2749 12 14 0.8838 0.1073 -7.4094 13 1 -0.5995 0.1097 -7.3397 14 1 1.3168 -0.4335 -8.7229 15 1 1.4292 -0.7421 -6.3202 16 6 2.3831 2.0792 1.2728 17 6 2.2449 1.3893 2.4797 18 6 2.5788 2.0061 3.6656 19 6 3.0422 3.3157 3.6634 20 8 3.3651 3.9218 4.8350 21 6 3.1756 4.0073 2.4660 22 6 2.8490 3.3962 1.2751 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.3798 3.1452 -3.4045 29 1 3.0517 2.5539 -3.5588 30 1 2.2377 0.5866 -4.8307 31 1 0.5662 1.1783 -4.6760 32 1 1.4866 2.2661 -9.1577 33 1 1.8805 0.3726 2.4827 34 1 2.4761 1.4720 4.5987 35 1 2.6289 4.3906 5.2513 36 1 3.5358 5.0254 2.4686 37 1 2.9527 3.9347 0.3447 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821227324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:42 Heat of formation + Delta-G solvation = -19.807567 kcal Electronic energy + Delta-G solvation = -18663.448341 eV Core-core repulsion = 15600.508698 eV Total energy + Delta-G solvation = -3062.939643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03403 -37.99728 -36.81072 -35.07841 -33.11918 -31.79876 -30.92511 -30.43990 -29.02183 -24.89178 -24.26794 -23.00442 -22.49086 -20.59870 -19.63404 -18.73158 -17.08538 -16.58293 -16.22131 -15.53996 -15.40370 -15.02103 -14.77165 -14.18237 -14.11555 -13.82577 -13.53705 -13.27452 -12.74233 -12.58741 -12.28525 -12.21734 -12.02926 -11.83136 -11.38687 -11.05426 -10.93795 -10.73177 -10.34592 -10.23238 -9.92336 -9.50330 -9.36682 -9.28667 -9.28107 -8.60418 -8.31124 -6.11156 -4.11401 0.57299 1.11384 2.31037 3.01024 3.28833 3.36051 3.41116 3.50596 3.91841 4.35548 4.40349 4.64508 4.69557 4.95851 5.07067 5.21528 5.22768 5.26708 5.28763 5.53487 5.61900 5.73249 5.83588 5.91348 6.05704 6.13591 6.13788 6.18901 6.25050 6.29374 6.49422 6.56614 6.67143 7.18178 7.28689 7.32455 7.66998 7.85496 8.43093 8.91069 9.49144 11.01596 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.003426 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.652490 B = 8170.399222 C = 8831.977480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.149 3.851 4 N -0.329 5.329 5 O -0.228 6.228 6 C 0.086 3.914 7 C -0.005 4.005 8 C -0.523 4.523 9 H 0.075 0.925 10 C 0.071 3.929 11 N -0.899 5.899 12 Si 0.881 3.119 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.264 1.264 16 C -0.046 4.046 17 C -0.079 4.079 18 C -0.149 4.149 19 C 0.112 3.888 20 O -0.500 6.500 21 C -0.148 4.148 22 C -0.067 4.067 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.265 0.735 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.391 0.609 36 H 0.132 0.868 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -2.239 25.934 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.040 4.040 4 N -0.070 5.070 5 O -0.247 6.247 6 C 0.010 3.990 7 C -0.044 4.044 8 C -0.561 4.561 9 H 0.093 0.907 10 C -0.131 4.131 11 N -0.537 5.537 12 Si 0.708 3.292 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.188 1.188 16 C -0.047 4.047 17 C -0.099 4.099 18 C -0.167 4.167 19 C 0.066 3.934 20 O -0.311 6.311 21 C -0.166 4.166 22 C -0.087 4.087 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.247 0.753 36 H 0.150 0.850 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.016 -1.824 25.099 25.165 hybrid contribution -0.934 -1.157 -0.135 1.494 sum -0.918 -2.981 24.964 25.158 Atomic orbital electron populations 1.21639 0.93837 1.02149 1.02460 1.21013 0.97309 0.93179 1.03867 1.22983 0.95879 0.94395 0.90734 1.76434 1.12395 1.25207 0.92961 1.89893 1.85167 1.38876 1.10789 1.22739 1.00180 0.94251 0.81861 1.19580 0.96985 0.96845 0.90952 1.20864 1.45325 1.00879 0.89059 0.90691 1.24937 0.94810 0.97685 0.95641 1.69895 1.48639 1.36705 0.98475 0.86757 0.79575 0.85239 0.77672 1.20103 1.21194 1.18829 1.18363 1.01853 0.94092 0.90384 1.21162 0.98115 1.00018 0.90645 1.21295 1.01391 0.95235 0.98793 1.18644 0.97510 0.91694 0.85511 1.84793 1.39728 1.71442 1.35118 1.21405 1.02404 1.00988 0.91846 1.21345 0.95131 0.93734 0.98456 0.92639 0.91920 0.91985 0.89553 0.90462 0.93137 0.93115 0.95686 0.96110 0.92486 0.84685 0.85019 0.75289 0.85003 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.24 16 2 C -0.11 -1.39 5.36 -27.88 -0.15 -1.54 16 3 C 0.15 2.13 6.37 -79.83 -0.51 1.62 16 4 N -0.33 -5.81 10.46 35.08 0.37 -5.44 16 5 O -0.23 -4.65 10.24 -11.47 -0.12 -4.77 16 6 C 0.09 1.89 6.34 37.16 0.24 2.12 16 7 C 0.00 -0.12 4.41 -27.88 -0.12 -0.24 16 8 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 9 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 10 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 11 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 12 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 16 C -0.05 -0.55 5.87 -105.02 -0.62 -1.16 16 17 C -0.08 -0.74 9.36 -39.20 -0.37 -1.11 16 18 C -0.15 -1.27 9.97 -39.50 -0.39 -1.67 16 19 C 0.11 1.03 6.71 -39.08 -0.26 0.77 16 20 O -0.50 -3.95 13.49 -19.13 -0.26 -4.21 16 21 C -0.15 -1.47 9.97 -39.50 -0.39 -1.87 16 22 C -0.07 -0.78 9.57 -39.20 -0.38 -1.16 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.21 7.52 -51.93 -0.39 0.82 16 27 H 0.08 0.71 6.23 -51.92 -0.32 0.38 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.14 0.97 6.25 -52.49 -0.33 0.65 16 34 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.39 1.15 9.06 45.56 0.41 1.57 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.73 7.55 -52.49 -0.40 1.34 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -33.16 319.82 -6.44 -39.60 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.34 Total: -1.31 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.02 Total: -18.91 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 1.14 Total: -32.36 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.38 Total: -8.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.16 -6.44 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821227324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.794 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds