Wall clock time and date at job start Mon Mar 30 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47280 * 2 1 4 4 N 1.29391 * 120.00116 * 274.99793 * 3 2 1 5 5 O 1.41605 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.42895 * 114.00101 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47271 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46898 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00371 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99765 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00056 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 120.00034 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46842 * 89.99880 * 12 10 8 14 14 H 1.48493 * 109.47201 * 209.99960 * 12 10 8 15 15 H 1.48501 * 109.47166 * 330.00206 * 12 10 8 16 16 C 1.47536 * 120.00083 * 94.99509 * 3 2 1 17 17 C 1.39699 * 120.08989 * 359.72642 * 16 3 2 18 18 C 1.37783 * 119.90033 * 179.73823 * 17 16 3 19 19 C 1.38917 * 120.09783 * 0.51325 * 18 17 16 20 20 O 1.35804 * 119.91018 * 179.73891 * 19 18 17 21 21 C 1.38918 * 120.18205 * 359.76510 * 19 18 17 22 22 C 1.37782 * 120.09628 * 359.97438 * 21 19 18 23 23 H 1.08999 * 109.47454 * 300.00341 * 1 2 3 24 24 H 1.09001 * 109.46631 * 60.00107 * 1 2 3 25 25 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47454 * 239.99659 * 2 1 3 27 27 H 1.09007 * 109.46658 * 119.99432 * 2 1 3 28 28 H 1.09004 * 109.47062 * 300.00789 * 6 5 4 29 29 H 1.09004 * 109.46926 * 60.00371 * 6 5 4 30 30 H 1.09001 * 109.46712 * 300.00106 * 7 6 5 31 31 H 1.08993 * 109.47000 * 59.99693 * 7 6 5 32 32 H 0.96999 * 119.99683 * 180.02562 * 11 10 8 33 33 H 1.07998 * 120.04783 * 359.97369 * 17 16 3 34 34 H 1.08007 * 119.94829 * 180.25402 * 18 17 16 35 35 H 0.96701 * 113.99737 * 270.02533 * 20 19 18 36 36 H 1.07998 * 119.95345 * 179.97438 * 21 19 18 37 37 H 1.08001 * 120.04725 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1560 2.0633 -1.1163 5 8 1.8197 1.4312 -2.3380 6 6 2.0052 2.2565 -3.4897 7 6 1.6125 1.4755 -4.7454 8 6 1.8088 2.3457 -5.9600 9 1 2.1764 3.3549 -5.8476 10 6 1.5190 1.8533 -7.2149 11 7 1.6908 2.6125 -8.2749 12 14 0.8838 0.1073 -7.4094 13 1 -0.5995 0.1097 -7.3397 14 1 1.3168 -0.4335 -8.7229 15 1 1.4292 -0.7421 -6.3202 16 6 2.3831 2.0792 1.2728 17 6 2.2449 1.3893 2.4797 18 6 2.5788 2.0061 3.6656 19 6 3.0422 3.3157 3.6634 20 8 3.3651 3.9218 4.8350 21 6 3.1756 4.0073 2.4660 22 6 2.8490 3.3962 1.2751 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.3798 3.1452 -3.4045 29 1 3.0517 2.5539 -3.5588 30 1 2.2377 0.5866 -4.8307 31 1 0.5662 1.1783 -4.6760 32 1 1.4866 2.2661 -9.1577 33 1 1.8805 0.3726 2.4827 34 1 2.4761 1.4720 4.5987 35 1 2.6289 4.3906 5.2513 36 1 3.5358 5.0254 2.4686 37 1 2.9527 3.9347 0.3447 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821227324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:42 Heat of formation + Delta-G solvation = -42.297213 kcal Electronic energy + Delta-G solvation = -18664.423565 eV Core-core repulsion = 15600.508698 eV Total energy + Delta-G solvation = -3063.914867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80572 -39.07503 -37.91612 -36.28087 -35.11890 -32.98632 -32.21883 -31.58625 -30.15848 -26.69624 -25.36776 -23.87467 -23.30005 -22.57260 -20.70889 -19.39893 -19.07356 -17.79690 -17.24586 -16.66663 -16.42604 -16.32342 -16.18365 -15.69127 -15.35140 -14.87137 -14.62390 -14.51289 -14.20886 -13.68772 -13.55123 -13.37640 -13.02173 -12.98200 -12.73158 -12.69661 -12.25679 -11.98171 -11.93507 -11.78045 -11.56734 -11.40798 -10.86336 -10.70793 -10.70076 -10.02788 -9.32491 -8.36577 -6.43845 -0.29443 0.36952 1.30967 1.34230 1.36030 1.49012 1.64857 2.31875 2.72397 2.97882 3.25217 3.38761 3.85634 3.98138 4.00612 4.23817 4.28585 4.33439 4.36566 4.41818 4.48329 4.66607 4.74283 4.80633 4.81007 4.98335 5.05613 5.06413 5.21774 5.30037 5.31990 5.39466 5.44311 5.48159 5.65906 5.78221 6.15699 6.51658 6.61807 6.86460 7.20917 8.79654 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036466 B = 0.003426 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.652490 B = 8170.399222 C = 8831.977480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.172 3.828 4 N -0.372 5.372 5 O -0.249 6.249 6 C 0.104 3.896 7 C 0.002 3.998 8 C -0.539 4.539 9 H 0.037 0.963 10 C 0.012 3.988 11 N -0.944 5.944 12 Si 0.953 3.047 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.250 1.250 16 C -0.076 4.076 17 C -0.063 4.063 18 C -0.146 4.146 19 C 0.124 3.876 20 O -0.507 6.507 21 C -0.158 4.158 22 C -0.079 4.079 23 H 0.073 0.927 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.271 0.729 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.415 0.585 36 H 0.141 0.859 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -4.541 29.407 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.017 4.017 4 N -0.118 5.118 5 O -0.263 6.263 6 C 0.027 3.973 7 C -0.037 4.037 8 C -0.576 4.576 9 H 0.055 0.945 10 C -0.186 4.186 11 N -0.583 5.583 12 Si 0.776 3.224 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.174 1.174 16 C -0.078 4.078 17 C -0.083 4.083 18 C -0.164 4.164 19 C 0.078 3.922 20 O -0.322 6.322 21 C -0.176 4.176 22 C -0.099 4.099 23 H 0.092 0.908 24 H 0.048 0.952 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.275 0.725 36 H 0.159 0.841 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.684 -4.121 28.577 28.881 hybrid contribution -0.659 -0.318 -0.880 1.144 sum -1.343 -4.439 27.697 28.083 Atomic orbital electron populations 1.21619 0.92912 1.03377 1.01745 1.21144 0.97989 0.91699 1.04780 1.23702 0.92033 0.95354 0.90597 1.76583 1.16893 1.25782 0.92518 1.89778 1.86087 1.38784 1.11684 1.22226 0.99194 0.93565 0.82276 1.19399 0.97252 0.96274 0.90747 1.21116 1.45285 1.00055 0.91193 0.94496 1.25926 0.94855 1.02746 0.95027 1.70034 1.49877 1.39169 0.99257 0.85618 0.79458 0.79120 0.78252 1.18747 1.20261 1.17367 1.18426 1.04542 0.94570 0.90218 1.21425 0.96493 1.00849 0.89512 1.21612 1.00289 0.94884 0.99642 1.18770 0.95743 0.92053 0.85595 1.84735 1.41315 1.71721 1.34393 1.21515 1.02769 1.01657 0.91696 1.21302 0.95974 0.94108 0.98516 0.90753 0.95221 0.89792 0.91619 0.86512 0.94012 0.94102 0.95462 0.95493 0.92012 0.81948 0.82037 0.72492 0.84074 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.89 71.98 0.71 -2.12 16 2 C -0.12 -2.61 5.36 29.85 0.16 -2.45 16 3 C 0.17 4.79 6.37 45.37 0.29 5.08 16 4 N -0.37 -13.60 10.46 -42.94 -0.45 -14.05 16 5 O -0.25 -10.51 10.24 -38.80 -0.40 -10.90 16 6 C 0.10 4.81 6.34 71.98 0.46 5.27 16 7 C 0.00 0.11 4.41 29.85 0.13 0.24 16 8 C -0.54 -32.30 9.66 25.60 0.25 -32.05 16 9 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 10 C 0.01 0.74 5.47 84.65 0.46 1.21 16 11 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 12 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 13 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 16 C -0.08 -1.71 5.87 -20.12 -0.12 -1.83 16 17 C -0.06 -0.93 9.36 22.52 0.21 -0.72 16 18 C -0.15 -1.87 9.97 22.32 0.22 -1.65 16 19 C 0.12 1.90 6.71 22.60 0.15 2.05 16 20 O -0.51 -6.19 13.49 -91.36 -1.23 -7.42 16 21 C -0.16 -2.93 9.97 22.32 0.22 -2.71 16 22 C -0.08 -1.84 9.57 22.51 0.22 -1.63 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.78 7.52 -2.39 -0.02 1.76 16 27 H 0.12 1.65 6.23 -2.38 -0.01 1.64 16 28 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 31 H 0.03 1.32 7.57 -2.39 -0.02 1.31 16 32 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.16 1.46 6.25 -2.91 -0.02 1.44 16 34 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.41 0.88 9.06 -74.06 -0.67 0.21 16 36 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.12 3.19 7.55 -2.91 -0.02 3.17 16 Total: -1.00 -74.79 319.82 3.82 -70.97 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.35 Total: 5.28 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.36 Total: -31.31 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -0.15 Total: -73.48 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.63 Total: -18.32 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -74.79 3.82 -70.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821227324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.676 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds