Wall clock time and date at job start Mon Mar 30 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 C 1.52998 * 109.46808 * 119.99769 * 2 1 3 5 5 C 1.50707 * 109.46823 * 185.00405 * 4 2 1 6 6 H 1.07996 * 120.00140 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99674 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47030 * 60.00427 * 9 7 5 11 11 H 1.48502 * 109.47072 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47480 * 300.00498 * 9 7 5 13 13 O 1.42895 * 109.47468 * 239.99687 * 2 1 3 14 14 C 1.35903 * 116.99847 * 84.77261 * 13 2 1 15 15 C 1.38793 * 119.88281 * 354.62780 * 14 13 2 16 16 C 1.38257 * 119.70965 * 179.85555 * 15 14 13 17 17 C 1.37794 * 120.04755 * 359.97438 * 16 15 14 18 18 C 1.38936 * 120.87480 * 0.34483 * 17 16 15 19 19 C 1.38417 * 119.88535 * 174.65327 * 14 13 2 20 20 O 1.36145 * 111.22267 * 178.95629 * 18 17 16 21 21 C 1.43758 * 109.24419 * 19.03100 * 20 18 17 22 22 C 1.51660 * 132.09993 * 180.37464 * 17 16 15 23 23 H 1.09007 * 110.94269 * 282.73321 * 22 17 16 24 24 N 1.46908 * 110.93791 * 46.37674 * 22 17 16 25 25 H 1.09003 * 109.46874 * 60.00292 * 1 2 3 26 26 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47323 * 300.00297 * 1 2 3 28 28 H 1.09007 * 109.47351 * 304.99703 * 4 2 1 29 29 H 1.08992 * 109.47088 * 65.00400 * 4 2 1 30 30 H 0.96998 * 119.99954 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.14696 * 359.83453 * 15 14 13 32 32 H 1.07999 * 119.97672 * 180.02562 * 16 15 14 33 33 H 1.08004 * 119.89531 * 359.97438 * 19 14 13 34 34 H 1.09000 * 110.75048 * 213.90571 * 21 20 18 35 35 H 1.09002 * 110.75511 * 90.55618 * 21 20 18 36 36 H 1.00891 * 111.00074 * 176.99007 * 24 22 17 37 37 H 1.00901 * 110.99634 * 300.94551 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0860 0.5393 7 6 4.2303 -1.1925 2.3585 8 7 3.5762 -1.8368 3.3002 9 14 6.0920 -1.0612 2.4369 10 1 6.4853 0.3697 2.4955 11 1 6.5869 -1.7611 3.6496 12 1 6.6839 -1.6881 1.2279 13 8 2.0064 -0.6737 -1.1667 14 6 2.1081 0.0614 -2.3052 15 6 1.6514 1.3719 -2.3254 16 6 1.7593 2.1174 -3.4847 17 6 2.3187 1.5599 -4.6139 18 6 2.7740 0.2473 -4.6104 19 6 2.6662 -0.4997 -3.4409 20 8 3.2661 -0.1070 -5.8293 21 6 3.5683 1.0803 -6.5816 22 6 2.5753 2.1152 -6.0017 23 1 1.6557 2.1429 -6.5864 24 7 3.1882 3.4483 -5.9287 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6053 -0.2616 2.1371 29 1 1.7516 -1.7714 1.2056 30 1 4.0606 -2.2435 4.0356 31 1 1.2133 1.8073 -1.4394 32 1 1.4058 3.1376 -3.5051 33 1 3.0198 -1.5200 -3.4191 34 1 3.3839 0.9216 -7.6441 35 1 4.5978 1.3947 -6.4100 36 1 3.4042 3.7979 -6.8501 37 1 2.5945 4.0922 -5.4276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829187908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:11 Heat of formation + Delta-G solvation = -47.042895 kcal Electronic energy + Delta-G solvation = -19558.484199 eV Core-core repulsion = 16494.363544 eV Total energy + Delta-G solvation = -3064.120656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09849 -39.20030 -36.20762 -34.83698 -33.38221 -31.68538 -30.07898 -29.20874 -27.84396 -27.44259 -23.49698 -23.20762 -22.27080 -20.96566 -20.01919 -17.89173 -16.75936 -16.66217 -16.44519 -16.09587 -15.49865 -14.94745 -14.46402 -14.39061 -14.28349 -13.98983 -13.30716 -12.96315 -12.79429 -12.40063 -12.28868 -11.90660 -11.77862 -11.46842 -11.35490 -11.18308 -10.81564 -10.68181 -10.61139 -10.28660 -9.98880 -9.37225 -9.15655 -9.07585 -8.37513 -8.30196 -7.65528 -6.00395 -4.01818 1.55028 1.61435 3.10376 3.36785 3.40255 3.44689 3.85307 4.05614 4.19899 4.42420 4.48103 4.61768 4.87221 5.01149 5.28019 5.36737 5.40342 5.41521 5.48847 5.63727 5.73614 5.79577 5.89211 6.09354 6.20948 6.36286 6.44262 6.54920 6.58401 6.67763 6.74315 6.80777 7.06962 7.23802 7.49534 7.59139 7.96081 8.12020 8.36929 9.01642 9.61726 11.10980 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023119 B = 0.004847 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.834012 B = 5775.690843 C = 6356.842388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.065 0.935 4 C 0.026 3.974 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 O -0.286 6.286 14 C 0.190 3.810 15 C -0.241 4.241 16 C -0.023 4.023 17 C -0.223 4.223 18 C 0.146 3.854 19 C -0.182 4.182 20 O -0.303 6.303 21 C 0.057 3.943 22 C 0.110 3.890 23 H 0.058 0.942 24 N -0.834 5.834 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.342 0.658 37 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 9.361 -17.642 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.083 0.917 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 O -0.198 6.198 14 C 0.142 3.858 15 C -0.260 4.260 16 C -0.041 4.041 17 C -0.224 4.224 18 C 0.100 3.900 19 C -0.201 4.201 20 O -0.216 6.216 21 C -0.018 4.018 22 C -0.001 4.001 23 H 0.075 0.925 24 N -0.366 5.366 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.227 8.457 -17.115 19.553 hybrid contribution 0.131 0.737 -0.399 0.848 sum -4.097 9.194 -17.514 20.200 Atomic orbital electron populations 1.22423 0.96896 1.02700 1.01527 1.22931 0.91887 0.97254 0.84850 0.91713 1.19274 0.96617 0.96539 0.88684 1.21093 0.91670 1.34657 1.07948 0.92605 1.24965 0.98467 0.95182 0.95627 1.69937 1.35687 1.35912 1.12107 0.86644 0.85680 0.78248 0.77409 1.20239 1.21274 1.20129 1.86281 1.79401 1.38098 1.16023 1.18630 0.90497 0.89706 0.86980 1.21247 1.10031 0.94858 0.99831 1.19878 0.95282 0.98446 0.90541 1.20281 1.10195 0.95909 0.96045 1.18937 0.92945 0.92678 0.85410 1.19225 1.09901 1.02291 0.88727 1.86817 1.79736 1.31311 1.23750 1.23867 0.99819 0.82381 0.95768 1.21329 0.95358 0.90248 0.93199 0.92457 1.58647 1.51364 1.03433 1.23136 0.93186 0.91862 0.91305 0.94272 0.95234 0.92882 0.84587 0.86323 0.84672 0.88089 0.89528 0.84555 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.16 37.16 0.34 -2.64 16 2 C 0.09 1.78 2.17 -26.73 -0.06 1.72 16 3 H 0.06 1.30 6.31 -51.93 -0.33 0.97 16 4 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 5 C -0.52 -14.67 8.88 -34.43 -0.31 -14.97 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 O -0.29 -6.18 9.55 -19.44 -0.19 -6.36 16 14 C 0.19 3.58 6.59 -39.31 -0.26 3.32 16 15 C -0.24 -3.90 8.24 -39.37 -0.32 -4.23 16 16 C -0.02 -0.32 10.01 -39.74 -0.40 -0.72 16 17 C -0.22 -3.16 5.91 -104.05 -0.62 -3.78 16 18 C 0.15 2.37 7.03 -38.97 -0.27 2.09 16 19 C -0.18 -3.28 10.00 -39.16 -0.39 -3.67 16 20 O -0.30 -4.48 11.10 -20.20 -0.22 -4.70 16 21 C 0.06 0.61 7.73 38.05 0.29 0.90 16 22 C 0.11 1.16 4.26 -67.49 -0.29 0.87 16 23 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 24 N -0.83 -7.26 9.32 -4.47 -0.04 -7.30 16 25 H 0.05 0.74 6.89 -51.93 -0.36 0.38 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.14 2.06 5.41 -52.49 -0.28 1.78 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.14 2.40 8.06 -52.48 -0.42 1.97 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.34 2.05 9.08 -39.30 -0.36 1.69 16 37 H 0.35 2.66 9.03 -39.29 -0.35 2.31 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -31.97 310.06 -7.59 -39.56 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.02 Total: 2.13 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.51 Total: -18.98 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.69 Total: -33.41 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.41 Total: -11.06 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.97 -7.59 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.483 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds