Wall clock time and date at job start Mon Mar 30 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47217 * 2 1 4 4 C 1.52998 * 109.46808 * 119.99769 * 2 1 3 5 5 C 1.50707 * 109.46823 * 185.00405 * 4 2 1 6 6 H 1.07996 * 120.00140 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99674 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47030 * 60.00427 * 9 7 5 11 11 H 1.48502 * 109.47072 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47480 * 300.00498 * 9 7 5 13 13 O 1.42895 * 109.47468 * 239.99687 * 2 1 3 14 14 C 1.35903 * 116.99847 * 84.77261 * 13 2 1 15 15 C 1.38793 * 119.88281 * 354.62780 * 14 13 2 16 16 C 1.38257 * 119.70965 * 179.85555 * 15 14 13 17 17 C 1.37794 * 120.04755 * 359.97438 * 16 15 14 18 18 C 1.38936 * 120.87480 * 0.34483 * 17 16 15 19 19 C 1.38417 * 119.88535 * 174.65327 * 14 13 2 20 20 O 1.36145 * 111.22267 * 178.95629 * 18 17 16 21 21 C 1.43758 * 109.24419 * 19.03100 * 20 18 17 22 22 C 1.51660 * 132.09993 * 180.37464 * 17 16 15 23 23 H 1.09007 * 110.94269 * 282.73321 * 22 17 16 24 24 N 1.46908 * 110.93791 * 46.37674 * 22 17 16 25 25 H 1.09003 * 109.46874 * 60.00292 * 1 2 3 26 26 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47323 * 300.00297 * 1 2 3 28 28 H 1.09007 * 109.47351 * 304.99703 * 4 2 1 29 29 H 1.08992 * 109.47088 * 65.00400 * 4 2 1 30 30 H 0.96998 * 119.99954 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.14696 * 359.83453 * 15 14 13 32 32 H 1.07999 * 119.97672 * 180.02562 * 16 15 14 33 33 H 1.08004 * 119.89531 * 359.97438 * 19 14 13 34 34 H 1.09000 * 110.75048 * 213.90571 * 21 20 18 35 35 H 1.09002 * 110.75511 * 90.55618 * 21 20 18 36 36 H 1.00891 * 111.00074 * 176.99007 * 24 22 17 37 37 H 1.00901 * 110.99634 * 300.94551 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0860 0.5393 7 6 4.2303 -1.1925 2.3585 8 7 3.5762 -1.8368 3.3002 9 14 6.0920 -1.0612 2.4369 10 1 6.4853 0.3697 2.4955 11 1 6.5869 -1.7611 3.6496 12 1 6.6839 -1.6881 1.2279 13 8 2.0064 -0.6737 -1.1667 14 6 2.1081 0.0614 -2.3052 15 6 1.6514 1.3719 -2.3254 16 6 1.7593 2.1174 -3.4847 17 6 2.3187 1.5599 -4.6139 18 6 2.7740 0.2473 -4.6104 19 6 2.6662 -0.4997 -3.4409 20 8 3.2661 -0.1070 -5.8293 21 6 3.5683 1.0803 -6.5816 22 6 2.5753 2.1152 -6.0017 23 1 1.6557 2.1429 -6.5864 24 7 3.1882 3.4483 -5.9287 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6053 -0.2616 2.1371 29 1 1.7516 -1.7714 1.2056 30 1 4.0606 -2.2435 4.0356 31 1 1.2133 1.8073 -1.4394 32 1 1.4058 3.1376 -3.5051 33 1 3.0198 -1.5200 -3.4191 34 1 3.3839 0.9216 -7.6441 35 1 4.5978 1.3947 -6.4100 36 1 3.4042 3.7979 -6.8501 37 1 2.5945 4.0922 -5.4276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829187908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:10 Heat of formation + Delta-G solvation = -69.517847 kcal Electronic energy + Delta-G solvation = -19559.458786 eV Core-core repulsion = 16494.363544 eV Total energy + Delta-G solvation = -3065.095243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20705 -40.61257 -37.50519 -35.77986 -35.27893 -33.44606 -31.33792 -30.32219 -29.33236 -28.76724 -25.34942 -24.36973 -23.68618 -21.99666 -21.53780 -19.25706 -18.55347 -17.82249 -17.60788 -17.39362 -16.66202 -16.47476 -15.97960 -15.77741 -15.42645 -15.01979 -14.61540 -14.44007 -14.13914 -13.86759 -13.65091 -13.43588 -13.26464 -13.17351 -12.78017 -12.63837 -12.40930 -12.32744 -12.03193 -11.77565 -11.54296 -11.28316 -11.01383 -10.59128 -9.80294 -9.58324 -8.89081 -8.21809 -6.30644 0.31747 0.38163 1.37328 1.40416 1.48235 1.93430 2.39655 2.67334 2.76293 3.13043 3.35726 3.53582 3.66650 3.91436 4.06391 4.10545 4.19520 4.22327 4.32906 4.46847 4.51201 4.58750 4.69631 4.77534 4.92739 5.03202 5.12314 5.20715 5.28493 5.35067 5.43067 5.47829 5.53310 5.75788 6.08457 6.14138 6.18493 6.58242 6.65008 6.80899 7.36824 8.89689 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023119 B = 0.004847 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.834012 B = 5775.690843 C = 6356.842388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 H 0.071 0.929 4 C 0.028 3.972 5 C -0.534 4.534 6 H 0.049 0.951 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.276 1.276 13 O -0.319 6.319 14 C 0.160 3.840 15 C -0.243 4.243 16 C -0.017 4.017 17 C -0.217 4.217 18 C 0.134 3.866 19 C -0.208 4.208 20 O -0.320 6.320 21 C 0.050 3.950 22 C 0.118 3.882 23 H 0.080 0.920 24 N -0.840 5.840 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.029 0.971 29 H -0.002 1.002 30 H 0.265 0.735 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.359 0.641 37 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 11.879 -19.708 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.089 0.911 4 C -0.009 4.009 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.202 1.202 13 O -0.233 6.233 14 C 0.113 3.887 15 C -0.262 4.262 16 C -0.035 4.035 17 C -0.218 4.218 18 C 0.088 3.912 19 C -0.227 4.227 20 O -0.234 6.234 21 C -0.025 4.025 22 C 0.007 3.993 23 H 0.098 0.902 24 N -0.375 5.375 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.016 0.984 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.176 0.824 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.175 0.825 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.124 11.000 -19.209 22.517 hybrid contribution 0.121 -0.021 0.100 0.159 sum -4.003 10.979 -19.109 22.399 Atomic orbital electron populations 1.22323 0.93806 1.02868 1.03468 1.22665 0.94190 0.96266 0.83050 0.91146 1.19130 0.95429 0.95162 0.91179 1.21436 0.93369 1.34585 1.07767 0.93263 1.25820 1.03322 0.94786 0.95268 1.70047 1.37553 1.36671 1.12701 0.85625 0.79883 0.78822 0.77501 1.18969 1.20275 1.20157 1.86183 1.80660 1.39431 1.17017 1.18831 0.92680 0.91002 0.86193 1.21414 1.09760 0.93795 1.01216 1.20274 0.94034 0.99806 0.89384 1.20803 1.08083 0.95076 0.97858 1.19059 0.93250 0.93444 0.85400 1.19289 1.11197 1.02233 0.89988 1.86801 1.79583 1.33698 1.23289 1.24235 0.99924 0.81133 0.97191 1.21313 0.96295 0.90976 0.90725 0.90223 1.58575 1.51407 1.02801 1.24700 0.90731 0.92631 0.89718 0.95274 0.98373 0.92634 0.83637 0.82436 0.86242 0.84453 0.89693 0.82544 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.54 9.16 71.98 0.66 -4.88 16 2 C 0.09 3.96 2.17 30.59 0.07 4.02 16 3 H 0.07 2.84 6.31 -2.39 -0.02 2.83 16 4 C 0.03 1.48 4.68 29.85 0.14 1.62 16 5 C -0.53 -31.29 8.88 25.60 0.23 -31.06 16 6 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 9 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 10 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 O -0.32 -14.38 9.55 -92.46 -0.88 -15.27 16 14 C 0.16 6.15 6.59 22.45 0.15 6.29 16 15 C -0.24 -7.58 8.24 22.41 0.18 -7.40 16 16 C -0.02 -0.42 10.01 22.17 0.22 -0.20 16 17 C -0.22 -5.61 5.91 -19.50 -0.12 -5.73 16 18 C 0.13 4.29 7.03 22.67 0.16 4.45 16 19 C -0.21 -7.77 10.00 22.54 0.23 -7.54 16 20 O -0.32 -9.10 11.10 -95.20 -1.06 -10.16 16 21 C 0.05 0.91 7.73 72.56 0.56 1.47 16 22 C 0.12 2.05 4.26 45.05 0.19 2.24 16 23 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 24 N -0.84 -11.20 9.32 -168.07 -1.57 -12.77 16 25 H 0.07 2.09 6.89 -2.39 -0.02 2.08 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 30 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.15 4.16 5.41 -2.91 -0.02 4.14 16 32 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 34 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 36 H 0.36 2.78 9.08 -89.70 -0.81 1.97 16 37 H 0.36 3.88 9.03 -89.69 -0.81 3.07 16 Total: -1.00 -71.56 310.06 1.41 -70.15 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.53 Total: 12.65 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 3.13 Total: -35.88 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.28 Total: -69.39 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.94 Total: -25.43 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.56 1.41 -70.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.632 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds