Wall clock time and date at job start Mon Mar 30 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08989 * 109.47411 * 2 1 4 4 C 1.53000 * 109.47013 * 239.99440 * 2 1 3 5 5 C 1.50707 * 109.46859 * 175.00433 * 4 2 1 6 6 H 1.08003 * 120.00059 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99676 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00465 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99739 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47111 * 59.99914 * 9 7 5 11 11 H 1.48497 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46838 * 299.99915 * 9 7 5 13 13 O 1.42901 * 109.46829 * 120.00069 * 2 1 3 14 14 C 1.35907 * 116.99654 * 275.09350 * 13 2 1 15 15 C 1.38792 * 119.88328 * 5.42969 * 14 13 2 16 16 C 1.38251 * 119.71007 * 180.20189 * 15 14 13 17 17 C 1.37789 * 120.04929 * 359.95325 * 16 15 14 18 18 C 1.38931 * 120.87106 * 359.66872 * 17 16 15 19 19 C 1.38421 * 119.88534 * 185.44718 * 14 13 2 20 20 O 1.36152 * 111.22233 * 181.05964 * 18 17 16 21 21 C 1.43766 * 109.21973 * 340.79857 * 20 18 17 22 22 C 1.51673 * 132.10255 * 179.41065 * 17 16 15 23 23 H 1.09001 * 110.93465 * 313.65805 * 22 17 16 24 24 N 1.46900 * 110.93557 * 77.30375 * 22 17 16 25 25 H 1.09000 * 109.47052 * 300.00331 * 1 2 3 26 26 H 1.08998 * 109.46965 * 60.00192 * 1 2 3 27 27 H 1.09000 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47128 * 295.00077 * 4 2 1 29 29 H 1.08995 * 109.47445 * 55.00453 * 4 2 1 30 30 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.14594 * 0.17977 * 15 14 13 32 32 H 1.07999 * 119.97252 * 179.97438 * 16 15 14 33 33 H 1.08000 * 119.89715 * 359.76950 * 19 14 13 34 34 H 1.09000 * 110.75470 * 269.51150 * 21 20 18 35 35 H 1.09006 * 110.90635 * 146.23630 * 21 20 18 36 36 H 1.00901 * 110.99652 * 180.02562 * 24 22 17 37 37 H 1.00902 * 110.99535 * 303.94882 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5420 -0.6151 -1.3126 6 1 4.0791 -0.0863 -0.5390 7 6 4.2304 -1.1929 -2.3581 8 7 3.5764 -1.8373 -3.2998 9 14 6.0921 -1.0606 -2.4371 10 1 6.6845 -1.6866 -1.2279 11 1 6.5871 -1.7608 -3.6494 12 1 6.4844 0.3703 -2.4964 13 8 2.0063 -0.6737 1.1668 14 6 2.1105 0.0622 2.3047 15 6 1.6553 1.3732 2.3245 16 6 1.7670 2.1198 3.4827 17 6 2.3271 1.5625 4.6116 18 6 2.7799 0.2491 4.6086 19 6 2.6706 -0.4984 3.4396 20 8 3.2731 -0.1050 5.8273 21 6 3.5822 1.0828 6.5760 22 6 2.5913 2.1203 5.9971 23 1 3.0505 3.1071 5.9386 24 7 1.3550 2.1653 6.7892 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2054 29 1 1.6055 -0.2620 -2.1369 30 1 4.0608 -2.2441 -4.0352 31 1 1.2162 1.8083 1.4390 32 1 1.4146 3.1405 3.5028 33 1 3.0199 -1.5201 3.4192 34 1 4.6123 1.3929 6.4004 35 1 3.4028 0.9295 7.6402 36 1 1.5297 2.5366 7.7111 37 1 0.6408 2.6973 6.3148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829187915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:15 Heat of formation + Delta-G solvation = -69.311602 kcal Electronic energy + Delta-G solvation = -19564.019782 eV Core-core repulsion = 16498.933482 eV Total energy + Delta-G solvation = -3065.086299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.18351 -40.60661 -37.48525 -35.67100 -35.25357 -33.44952 -31.36032 -30.33626 -29.33016 -28.79108 -25.34783 -24.30827 -23.66218 -22.08160 -21.52117 -19.20313 -18.54935 -17.94540 -17.53648 -17.27112 -16.65960 -16.47367 -15.95697 -15.82833 -15.44555 -14.92849 -14.62256 -14.35591 -14.13132 -13.86004 -13.64288 -13.38691 -13.22552 -13.12253 -12.81474 -12.63970 -12.42677 -12.28227 -12.09055 -11.76451 -11.55142 -11.28063 -11.01978 -10.59069 -9.73708 -9.53528 -8.93228 -8.21586 -6.30650 0.34692 0.37612 1.37425 1.40740 1.48429 1.96193 2.39750 2.67203 2.77809 3.13266 3.38325 3.51725 3.75710 3.92494 4.02279 4.14599 4.20226 4.23927 4.40738 4.46596 4.51400 4.57250 4.64394 4.78131 4.92411 5.03184 5.14179 5.21184 5.31296 5.35282 5.43430 5.48519 5.55089 5.75827 6.08677 6.17284 6.19749 6.60073 6.65522 6.80986 7.36878 8.89948 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.004767 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.882082 B = 5871.995791 C = 6544.056486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.050 0.950 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.264 1.264 13 O -0.320 6.320 14 C 0.163 3.837 15 C -0.246 4.246 16 C -0.016 4.016 17 C -0.222 4.222 18 C 0.145 3.855 19 C -0.213 4.213 20 O -0.319 6.319 21 C 0.049 3.951 22 C 0.117 3.883 23 H 0.087 0.913 24 N -0.844 5.844 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.054 0.946 28 H -0.003 1.003 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.358 0.642 37 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 12.577 19.177 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.039 3.961 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.189 1.189 13 O -0.233 6.233 14 C 0.116 3.884 15 C -0.265 4.265 16 C -0.035 4.035 17 C -0.224 4.224 18 C 0.099 3.901 19 C -0.232 4.232 20 O -0.233 6.233 21 C -0.026 4.026 22 C 0.006 3.994 23 H 0.104 0.896 24 N -0.379 5.379 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.015 0.985 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.177 0.823 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.174 0.826 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.651 11.278 19.005 22.399 hybrid contribution 1.005 0.615 -0.583 1.314 sum -2.646 11.893 18.421 22.086 Atomic orbital electron populations 1.22324 0.93898 1.02828 1.03451 1.22666 0.94135 0.96311 0.83032 0.91008 1.19131 0.95487 0.95128 0.91174 1.21440 0.93325 1.34587 1.07788 0.93138 1.25837 1.03399 0.94782 0.95264 1.70051 1.37589 1.36686 1.12722 0.85608 0.79788 0.78843 0.77493 1.20099 1.20379 1.18878 1.86188 1.80620 1.39435 1.17089 1.18839 0.92413 0.90981 0.86159 1.21394 1.09999 0.93742 1.01326 1.20332 0.93708 1.00031 0.89406 1.20779 1.08989 0.95435 0.97154 1.19085 0.92645 0.93258 0.85125 1.19290 1.11605 1.02164 0.90170 1.86788 1.79093 1.34030 1.23346 1.24215 0.98897 0.81769 0.97682 1.21311 0.91600 0.98599 0.87888 0.89566 1.58628 1.08753 1.63587 1.06931 0.90784 0.89686 0.92714 0.98456 0.95286 0.92647 0.83637 0.82284 0.86448 0.88627 0.85335 0.82618 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 9.17 71.98 0.66 -4.93 16 2 C 0.09 3.96 2.17 30.59 0.07 4.02 16 3 H 0.07 2.87 6.31 -2.39 -0.02 2.85 16 4 C 0.03 1.47 4.68 29.85 0.14 1.61 16 5 C -0.53 -31.09 8.88 25.60 0.23 -30.86 16 6 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 9 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 13 O -0.32 -14.41 9.55 -92.50 -0.88 -15.30 16 14 C 0.16 6.27 6.59 22.45 0.15 6.41 16 15 C -0.25 -7.59 8.24 22.41 0.18 -7.40 16 16 C -0.02 -0.40 10.03 22.17 0.22 -0.18 16 17 C -0.22 -5.67 5.89 -19.49 -0.11 -5.79 16 18 C 0.15 4.67 7.03 22.66 0.16 4.82 16 19 C -0.21 -8.02 10.00 22.54 0.23 -7.79 16 20 O -0.32 -9.35 11.11 -95.28 -1.06 -10.41 16 21 C 0.05 0.89 7.73 72.56 0.56 1.45 16 22 C 0.12 2.00 4.27 45.06 0.19 2.19 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 N -0.84 -12.09 9.33 -168.07 -1.57 -13.65 16 25 H 0.07 2.10 6.90 -2.39 -0.02 2.09 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.15 4.11 5.41 -2.91 -0.02 4.10 16 32 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.13 1.69 8.10 -2.38 -0.02 1.67 16 36 H 0.36 3.03 9.08 -89.69 -0.81 2.21 16 37 H 0.35 4.38 9.02 -89.69 -0.81 3.57 16 Total: -1.00 -71.88 310.09 1.41 -70.47 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -0.53 Total: 13.61 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 3.13 Total: -35.67 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.28 Total: -70.23 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -1.94 Total: -25.70 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.88 1.41 -70.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.154 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds