Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.50695 * 109.47216 * 239.99910 * 2 1 3 5 5 H 1.07996 * 120.00460 * 240.00334 * 4 2 1 6 6 C 1.37878 * 120.00004 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00075 * 179.72089 * 6 4 2 8 8 Si 1.86804 * 120.00093 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46964 * 269.72385 * 8 6 4 10 10 H 1.48502 * 109.46920 * 29.72012 * 8 6 4 11 11 H 1.48495 * 109.47214 * 149.72021 * 8 6 4 12 12 C 1.50697 * 109.46987 * 120.00280 * 2 1 3 13 13 O 1.21280 * 120.00480 * 110.29948 * 12 2 1 14 14 N 1.34784 * 119.99768 * 290.30680 * 12 2 1 15 15 C 1.46496 * 119.99907 * 5.56596 * 14 12 2 16 16 O 1.41603 * 119.99943 * 185.57743 * 14 12 2 17 17 C 1.42898 * 114.00106 * 86.56451 * 16 14 12 18 18 C 1.50704 * 109.46556 * 184.88684 * 17 16 14 19 19 C 1.38228 * 119.99889 * 269.72484 * 18 17 16 20 20 C 1.38241 * 119.99968 * 179.77352 * 19 18 17 21 21 C 1.38234 * 119.99636 * 0.50338 * 20 19 18 22 22 C 1.38231 * 120.00007 * 359.75085 * 21 20 19 23 23 C 1.38234 * 120.00319 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47118 * 173.03150 * 1 2 3 25 25 H 1.08997 * 109.46983 * 293.03554 * 1 2 3 26 26 H 1.09000 * 109.46580 * 53.03638 * 1 2 3 27 27 H 0.96998 * 119.99635 * 180.27617 * 7 6 4 28 28 H 1.09003 * 109.46636 * 90.00681 * 15 14 12 29 29 H 1.09005 * 109.47253 * 210.00332 * 15 14 12 30 30 H 1.08992 * 109.47614 * 330.00855 * 15 14 12 31 31 H 1.08995 * 109.47040 * 304.88326 * 17 16 14 32 32 H 1.08993 * 109.47395 * 64.88696 * 17 16 14 33 33 H 1.08001 * 120.00586 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.99871 * 180.22942 * 20 19 18 35 35 H 1.08006 * 119.99829 * 179.72647 * 21 20 19 36 36 H 1.08008 * 119.99604 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00178 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 2.1423 -0.8561 -3.5565 8 14 0.6260 1.2799 -2.6542 9 1 -0.8016 0.8740 -2.7061 10 1 0.8442 2.1742 -1.4889 11 1 0.9819 1.9990 -3.9036 12 6 2.0324 -0.7105 1.2304 13 8 2.5780 -1.7887 1.1279 14 7 1.8750 -0.1476 2.4450 15 6 1.1097 1.0938 2.5834 16 8 2.4498 -0.7562 3.5871 17 6 3.8040 -0.3711 3.8314 18 6 4.3501 -1.1637 4.9911 19 6 4.2281 -0.6773 6.2792 20 6 4.7249 -1.4065 7.3433 21 6 5.3528 -2.6173 7.1183 22 6 5.4794 -3.1012 5.8296 23 6 4.9776 -2.3747 4.7660 24 1 -0.3633 -1.0200 -0.1247 25 1 -0.3633 0.4021 0.9457 26 1 -0.3632 0.6180 -0.8211 27 1 1.9112 -0.5224 -4.4375 28 1 0.0605 0.8560 2.7593 29 1 1.4980 1.6683 3.4244 30 1 1.2008 1.6807 1.6695 31 1 4.4036 -0.5676 2.9426 32 1 3.8424 0.6922 4.0679 33 1 3.7419 0.2710 6.4546 34 1 4.6263 -1.0282 8.3501 35 1 5.7448 -3.1850 7.9493 36 1 5.9704 -4.0471 5.6538 37 1 5.0769 -2.7526 3.7592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830873310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = 5.937219 kcal Electronic energy + Delta-G solvation = -19523.562568 eV Core-core repulsion = 16461.739302 eV Total energy + Delta-G solvation = -3061.823266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52759 -39.00187 -36.59539 -34.31862 -33.23151 -31.69447 -30.99395 -30.66078 -26.61273 -25.83916 -25.13643 -22.72750 -22.66421 -21.35499 -19.20391 -17.21729 -17.02821 -16.74034 -15.99892 -15.68749 -15.26527 -15.02195 -14.62375 -13.88144 -13.70950 -13.45974 -13.35124 -13.23561 -12.89355 -12.60575 -12.48907 -12.39078 -11.76879 -11.62162 -11.23128 -11.12216 -11.05203 -10.64493 -10.41447 -10.11598 -9.68892 -9.19126 -9.03420 -9.00485 -8.77597 -8.63392 -8.39891 -6.10664 -4.12173 1.11663 1.31379 2.31908 3.20375 3.24752 3.32801 3.38661 3.69747 4.32452 4.61289 4.73250 4.86718 4.96687 5.05998 5.18103 5.20500 5.34845 5.42809 5.50499 5.54530 5.58277 5.60382 5.79989 5.87189 5.96417 6.09566 6.23592 6.32922 6.37870 6.40294 6.53540 6.58006 6.88203 7.10141 7.18840 7.46659 7.79854 8.46133 8.94547 9.07538 9.46749 11.02074 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038263 B = 0.004319 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.607703 B = 6481.477789 C = 6974.872673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.008 3.992 3 H 0.054 0.946 4 C -0.510 4.510 5 H 0.093 0.907 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.884 3.116 9 H -0.276 1.276 10 H -0.267 1.267 11 H -0.294 1.294 12 C 0.529 3.471 13 O -0.508 6.508 14 N -0.498 5.498 15 C 0.083 3.917 16 O -0.141 6.141 17 C 0.070 3.930 18 C -0.083 4.083 19 C -0.100 4.100 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.091 4.091 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.266 0.734 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 4.548 19.312 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 H 0.071 0.929 4 C -0.548 4.548 5 H 0.111 0.889 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.192 1.192 11 H -0.222 1.222 12 C 0.320 3.680 13 O -0.379 6.379 14 N -0.280 5.280 15 C -0.058 4.058 16 O -0.145 6.145 17 C -0.008 4.008 18 C -0.085 4.085 19 C -0.118 4.118 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.110 4.110 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.372 3.794 19.133 19.650 hybrid contribution -0.425 0.990 -0.108 1.083 sum 1.947 4.785 19.025 19.714 Atomic orbital electron populations 1.22277 0.96778 1.02443 0.99626 1.19370 0.93739 0.97214 0.91022 0.92852 1.20899 1.32551 1.14296 0.87050 0.88862 1.24945 0.95708 0.96609 0.95620 1.69874 1.45104 1.40117 0.97919 0.86925 0.80918 0.83679 0.77137 1.20294 1.19223 1.22152 1.21962 0.78210 0.86054 0.81772 1.90602 1.41942 1.20610 1.84748 1.50454 1.51400 1.26389 0.99791 1.22093 0.95597 0.84783 1.03307 1.90689 1.25468 1.63952 1.34346 1.21784 0.85403 0.97370 0.96221 1.19526 0.99362 0.95941 0.93651 1.21062 0.98863 1.00004 0.91875 1.21108 0.99283 0.95390 0.98752 1.21192 0.99089 0.96199 0.96959 1.21181 1.00292 1.00017 0.92649 1.21242 0.96286 0.93515 0.99915 0.91842 0.93907 0.93159 0.92411 0.91866 0.91358 0.89394 0.91221 0.92199 0.85962 0.85982 0.86079 0.85782 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.28 37.16 0.31 -2.82 16 2 C 0.01 0.20 1.40 -92.92 -0.13 0.07 16 3 H 0.05 1.16 6.13 -51.93 -0.32 0.84 16 4 C -0.51 -14.57 8.94 -34.44 -0.31 -14.88 16 5 H 0.09 3.05 7.04 -52.49 -0.37 2.68 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 8 Si 0.88 20.68 24.30 -169.99 -4.13 16.55 16 9 H -0.28 -6.28 6.94 56.52 0.39 -5.88 16 10 H -0.27 -5.68 6.51 56.52 0.37 -5.31 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.53 12.11 7.05 -10.98 -0.08 12.03 16 13 O -0.51 -13.68 15.93 -12.56 -0.20 -13.88 16 14 N -0.50 -9.24 3.38 -67.08 -0.23 -9.47 16 15 C 0.08 1.12 9.36 59.84 0.56 1.68 16 16 O -0.14 -2.59 10.82 -29.59 -0.32 -2.91 16 17 C 0.07 1.08 6.47 36.01 0.23 1.31 16 18 C -0.08 -1.16 5.51 -104.62 -0.58 -1.73 16 19 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 20 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 21 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 22 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 23 C -0.09 -1.26 9.70 -39.58 -0.38 -1.64 16 24 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 25 H 0.04 0.70 5.37 -51.93 -0.28 0.42 16 26 H 0.05 1.03 3.50 -51.93 -0.18 0.85 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.06 0.77 7.22 -51.93 -0.38 0.39 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.16 5.91 -51.93 -0.31 0.85 16 31 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 32 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -34.05 307.17 -6.33 -40.38 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.81 Total: 1.71 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -2.05 Total: -10.61 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.55 Total: -35.88 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.52 Total: -16.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.13 Total: 16.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.05 -6.33 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830873310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.318 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds