Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.50695 * 109.47216 * 239.99910 * 2 1 3 5 5 H 1.07996 * 120.00460 * 240.00334 * 4 2 1 6 6 C 1.37878 * 120.00004 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00075 * 179.72089 * 6 4 2 8 8 Si 1.86804 * 120.00093 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46964 * 269.72385 * 8 6 4 10 10 H 1.48502 * 109.46920 * 29.72012 * 8 6 4 11 11 H 1.48495 * 109.47214 * 149.72021 * 8 6 4 12 12 C 1.50697 * 109.46987 * 120.00280 * 2 1 3 13 13 O 1.21280 * 120.00480 * 110.29948 * 12 2 1 14 14 N 1.34784 * 119.99768 * 290.30680 * 12 2 1 15 15 C 1.46496 * 119.99907 * 5.56596 * 14 12 2 16 16 O 1.41603 * 119.99943 * 185.57743 * 14 12 2 17 17 C 1.42898 * 114.00106 * 86.56451 * 16 14 12 18 18 C 1.50704 * 109.46556 * 184.88684 * 17 16 14 19 19 C 1.38228 * 119.99889 * 269.72484 * 18 17 16 20 20 C 1.38241 * 119.99968 * 179.77352 * 19 18 17 21 21 C 1.38234 * 119.99636 * 0.50338 * 20 19 18 22 22 C 1.38231 * 120.00007 * 359.75085 * 21 20 19 23 23 C 1.38234 * 120.00319 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47118 * 173.03150 * 1 2 3 25 25 H 1.08997 * 109.46983 * 293.03554 * 1 2 3 26 26 H 1.09000 * 109.46580 * 53.03638 * 1 2 3 27 27 H 0.96998 * 119.99635 * 180.27617 * 7 6 4 28 28 H 1.09003 * 109.46636 * 90.00681 * 15 14 12 29 29 H 1.09005 * 109.47253 * 210.00332 * 15 14 12 30 30 H 1.08992 * 109.47614 * 330.00855 * 15 14 12 31 31 H 1.08995 * 109.47040 * 304.88326 * 17 16 14 32 32 H 1.08993 * 109.47395 * 64.88696 * 17 16 14 33 33 H 1.08001 * 120.00586 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.99871 * 180.22942 * 20 19 18 35 35 H 1.08006 * 119.99829 * 179.72647 * 21 20 19 36 36 H 1.08008 * 119.99604 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.00178 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 2.1423 -0.8561 -3.5565 8 14 0.6260 1.2799 -2.6542 9 1 -0.8016 0.8740 -2.7061 10 1 0.8442 2.1742 -1.4889 11 1 0.9819 1.9990 -3.9036 12 6 2.0324 -0.7105 1.2304 13 8 2.5780 -1.7887 1.1279 14 7 1.8750 -0.1476 2.4450 15 6 1.1097 1.0938 2.5834 16 8 2.4498 -0.7562 3.5871 17 6 3.8040 -0.3711 3.8314 18 6 4.3501 -1.1637 4.9911 19 6 4.2281 -0.6773 6.2792 20 6 4.7249 -1.4065 7.3433 21 6 5.3528 -2.6173 7.1183 22 6 5.4794 -3.1012 5.8296 23 6 4.9776 -2.3747 4.7660 24 1 -0.3633 -1.0200 -0.1247 25 1 -0.3633 0.4021 0.9457 26 1 -0.3632 0.6180 -0.8211 27 1 1.9112 -0.5224 -4.4375 28 1 0.0605 0.8560 2.7593 29 1 1.4980 1.6683 3.4244 30 1 1.2008 1.6807 1.6695 31 1 4.4036 -0.5676 2.9426 32 1 3.8424 0.6922 4.0679 33 1 3.7419 0.2710 6.4546 34 1 4.6263 -1.0282 8.3501 35 1 5.7448 -3.1850 7.9493 36 1 5.9704 -4.0471 5.6538 37 1 5.0769 -2.7526 3.7592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830873310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = -16.668235 kcal Electronic energy + Delta-G solvation = -19524.542814 eV Core-core repulsion = 16461.739302 eV Total energy + Delta-G solvation = -3062.803512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95652 -40.19032 -38.06507 -36.12456 -34.85907 -33.22206 -32.14978 -31.87438 -27.85361 -27.14546 -27.02944 -24.45812 -23.55596 -22.33667 -20.86235 -19.00694 -18.40113 -17.98378 -17.73077 -16.91113 -16.70192 -16.34985 -15.97340 -15.45967 -15.13021 -14.68175 -14.66420 -14.40361 -14.30463 -14.01774 -13.79436 -13.53410 -13.38212 -13.05427 -12.87936 -12.49747 -12.23642 -12.10381 -12.02919 -11.52015 -11.41046 -11.27332 -10.78518 -10.52019 -10.10668 -9.90269 -9.72852 -8.28439 -6.38590 0.13941 0.42157 0.97271 1.35559 1.42307 1.53717 1.64217 2.35115 2.76472 3.04766 3.43016 3.76050 3.78624 3.87870 4.06289 4.19372 4.24055 4.25916 4.33437 4.42146 4.55557 4.57102 4.59730 4.67117 4.74144 4.85654 4.92153 4.97381 5.08200 5.42947 5.44282 5.47045 5.53243 5.58428 5.82705 6.02153 6.11934 6.35699 6.74835 7.19771 7.31810 8.89352 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038263 B = 0.004319 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.607703 B = 6481.477789 C = 6974.872673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.009 3.991 3 H 0.082 0.918 4 C -0.529 4.529 5 H 0.025 0.975 6 C 0.009 3.991 7 N -0.952 5.952 8 Si 0.959 3.041 9 H -0.259 1.259 10 H -0.219 1.219 11 H -0.298 1.298 12 C 0.524 3.476 13 O -0.572 6.572 14 N -0.490 5.490 15 C 0.069 3.931 16 O -0.158 6.158 17 C 0.074 3.926 18 C -0.107 4.107 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.131 4.131 23 C -0.122 4.122 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.269 0.731 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 7.929 22.801 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 H 0.099 0.901 4 C -0.567 4.567 5 H 0.043 0.957 6 C -0.188 4.188 7 N -0.591 5.591 8 Si 0.782 3.218 9 H -0.184 1.184 10 H -0.142 1.142 11 H -0.226 1.226 12 C 0.315 3.685 13 O -0.448 6.448 14 N -0.270 5.270 15 C -0.069 4.069 16 O -0.161 6.161 17 C -0.004 4.004 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.140 4.140 21 C -0.129 4.129 22 C -0.149 4.149 23 C -0.141 4.141 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.568 7.218 22.695 23.822 hybrid contribution 0.253 -0.173 -1.075 1.117 sum 0.821 7.046 21.621 22.754 Atomic orbital electron populations 1.22195 0.93923 1.01866 1.02578 1.19295 0.95846 0.97411 0.88705 0.90067 1.21032 1.32290 1.13031 0.90361 0.95701 1.26063 0.97293 1.00976 0.94467 1.70079 1.47318 1.42871 0.98840 0.85733 0.78745 0.78742 0.78584 1.18448 1.14198 1.22577 1.21955 0.77673 0.85435 0.83427 1.90581 1.44806 1.23353 1.86088 1.50292 1.50825 1.27092 0.98803 1.22559 0.96247 0.82681 1.05460 1.90642 1.27029 1.65373 1.33094 1.21859 0.83361 0.99408 0.95732 1.19555 1.00736 0.96254 0.94348 1.21334 0.98651 1.00983 0.90915 1.21563 0.97673 0.94879 0.99930 1.21622 0.97938 0.96392 0.96977 1.21417 1.00121 1.00456 0.92860 1.21250 0.98460 0.94732 0.99645 0.93925 0.88994 0.92424 0.92218 0.89604 0.87842 0.88319 0.94515 0.89123 0.83699 0.82459 0.82793 0.84317 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 8.28 71.98 0.60 -5.02 16 2 C 0.01 0.42 1.40 -12.29 -0.02 0.41 16 3 H 0.08 3.27 6.13 -2.39 -0.01 3.25 16 4 C -0.53 -31.78 8.94 25.60 0.23 -31.55 16 5 H 0.02 1.78 7.04 -2.91 -0.02 1.76 16 6 C 0.01 0.51 5.45 84.65 0.46 0.97 16 7 N -0.95 -60.90 13.96 21.45 0.30 -60.61 16 8 Si 0.96 41.36 24.30 68.60 1.67 43.03 16 9 H -0.26 -10.47 6.94 99.48 0.69 -9.78 16 10 H -0.22 -7.77 6.51 99.48 0.65 -7.13 16 11 H -0.30 -13.02 7.11 99.48 0.71 -12.32 16 12 C 0.52 24.55 7.05 87.65 0.62 25.17 16 13 O -0.57 -33.26 15.93 14.29 0.23 -33.03 16 14 N -0.49 -17.59 3.38 -484.53 -1.64 -19.22 16 15 C 0.07 1.55 9.36 127.77 1.20 2.74 16 16 O -0.16 -5.75 10.82 -21.47 -0.23 -5.99 16 17 C 0.07 2.29 6.47 71.24 0.46 2.75 16 18 C -0.11 -2.99 5.51 -19.87 -0.11 -3.10 16 19 C -0.10 -2.09 9.70 22.27 0.22 -1.88 16 20 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 21 C -0.11 -1.94 10.05 22.27 0.22 -1.72 16 22 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 23 C -0.12 -3.57 9.70 22.27 0.22 -3.36 16 24 H 0.04 1.77 8.13 -2.39 -0.02 1.75 16 25 H 0.09 2.55 5.37 -2.39 -0.01 2.54 16 26 H 0.06 2.10 3.50 -2.39 -0.01 2.09 16 27 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 28 H 0.09 1.60 7.22 -2.39 -0.02 1.58 16 29 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.10 2.05 5.91 -2.39 -0.01 2.04 16 31 H 0.04 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 33 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.10 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -83.54 307.17 5.86 -77.68 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.99 Total: 17.26 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 4.54 Total: -19.13 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.34 Total: -79.83 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: 0.00 Total: -39.02 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.67 Total: 43.03 kcal Total: -83.54 5.86 -77.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830873310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.016 kcal (2) G-P(sol) polarization free energy of solvation -83.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds