Wall clock time and date at job start Mon Mar 30 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99801 * 2 1 4 4 C 1.50702 * 109.47325 * 180.02562 * 3 2 1 5 5 C 1.38287 * 119.92867 * 89.99586 * 4 3 2 6 6 C 1.38114 * 120.06603 * 179.97438 * 5 4 3 7 7 C 1.38872 * 119.93345 * 0.02562 * 6 5 4 8 8 N 1.39920 * 120.07065 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99826 * 35.08881 * 8 7 6 10 10 O 1.21284 * 120.00321 * 355.38554 * 9 8 7 11 11 C 1.50709 * 119.99773 * 175.38192 * 9 8 7 12 12 H 1.08995 * 109.46958 * 300.00320 * 11 9 8 13 13 C 1.52999 * 109.46757 * 60.00096 * 11 9 8 14 14 C 1.50698 * 109.46835 * 180.02562 * 11 9 8 15 15 H 1.08000 * 120.00258 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99730 * 180.27669 * 14 11 9 17 17 N 1.31512 * 120.00045 * 359.72978 * 16 14 11 18 18 Si 1.86797 * 119.99890 * 179.72295 * 16 14 11 19 19 H 1.48499 * 109.47004 * 90.00340 * 18 16 14 20 20 H 1.48505 * 109.47146 * 209.99934 * 18 16 14 21 21 H 1.48497 * 109.47371 * 329.99886 * 18 16 14 22 22 C 1.38877 * 119.85847 * 0.25565 * 7 6 5 23 23 C 1.38119 * 119.92697 * 359.47279 * 22 7 6 24 24 H 1.09003 * 109.47212 * 299.99594 * 1 2 3 25 25 H 1.08997 * 109.47261 * 60.00004 * 1 2 3 26 26 H 1.09006 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47345 * 59.99809 * 3 2 1 28 28 H 1.09008 * 109.47403 * 300.00001 * 3 2 1 29 29 H 1.07994 * 119.96245 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.02792 * 180.02562 * 6 5 4 31 31 H 0.97002 * 120.00132 * 215.08596 * 8 7 6 32 32 H 1.09006 * 109.46862 * 179.97438 * 13 11 9 33 33 H 1.08993 * 109.47344 * 299.99576 * 13 11 9 34 34 H 1.09009 * 109.47081 * 60.00326 * 13 11 9 35 35 H 0.96998 * 120.00127 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.03462 * 179.74221 * 22 7 6 37 37 H 1.07994 * 119.96639 * 180.27707 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1998 1.1322 -1.1994 6 6 5.5767 1.0238 -1.2033 7 6 6.2708 0.9688 -0.0018 8 7 7.6657 0.8584 -0.0024 9 6 8.3899 1.4742 -0.9577 10 8 7.8301 2.0539 -1.8640 11 6 9.8956 1.4425 -0.8996 12 1 10.2332 1.9065 0.0271 13 6 10.3773 -0.0088 -0.9484 14 6 10.4595 2.1994 -2.0744 15 1 9.7943 2.6571 -2.7916 16 6 11.8249 2.3021 -2.2370 17 7 12.6349 1.7441 -1.3641 18 14 12.5240 3.2336 -3.6975 19 1 12.7102 4.6607 -3.3312 20 1 13.8332 2.6456 -4.0790 21 1 11.5845 3.1352 -4.8432 22 6 5.5772 1.0177 1.2004 23 6 4.2007 1.1318 1.1975 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.6593 1.1747 -2.1334 30 1 6.1128 0.9819 -2.1398 31 1 8.1114 0.3387 0.6848 32 1 11.4663 -0.0317 -0.9069 33 1 9.9694 -0.5558 -0.0985 34 1 10.0396 -0.4728 -1.8752 35 1 13.5954 1.8167 -1.4783 36 1 6.1138 0.9709 2.1364 37 1 3.6610 1.1743 2.1320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834548436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:26 Heat of formation + Delta-G solvation = -61.145178 kcal Electronic energy + Delta-G solvation = -19046.204365 eV Core-core repulsion = 15981.472188 eV Total energy + Delta-G solvation = -3064.732177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04503 -38.58504 -37.40494 -34.30674 -33.85064 -31.14963 -30.75023 -29.98312 -27.03891 -25.26987 -25.14334 -22.92796 -22.65448 -21.04263 -19.38902 -17.50449 -16.54101 -16.32864 -16.20056 -15.96412 -15.70717 -14.74823 -14.56775 -14.30173 -13.82238 -13.57151 -13.16415 -13.02035 -12.74171 -12.40654 -12.36098 -11.74960 -11.60813 -11.23915 -11.06900 -10.97976 -10.78050 -10.75533 -10.34203 -10.01827 -9.87497 -9.81741 -9.04966 -8.83491 -8.60760 -8.38122 -7.74864 -6.08195 -4.11998 1.40487 1.62170 3.31484 3.37344 3.40462 3.43758 3.70260 3.73978 4.21639 4.43640 4.83653 4.87072 5.09383 5.11986 5.17153 5.24671 5.26765 5.28284 5.42434 5.57794 5.75636 5.89538 6.03475 6.26245 6.44787 6.52522 6.66706 6.74283 6.74841 6.83468 6.88006 6.96888 7.34010 7.41126 7.69003 7.89417 8.03804 8.29926 8.96193 9.02229 9.53853 10.99424 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.046371 B = 0.003603 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.682618 B = 7770.132085 C = 8117.734422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.109 3.891 4 C -0.127 4.127 5 C -0.079 4.079 6 C -0.129 4.129 7 C 0.171 3.829 8 N -0.689 5.689 9 C 0.519 3.481 10 O -0.523 6.523 11 C 0.031 3.969 12 H 0.056 0.944 13 C -0.135 4.135 14 C -0.504 4.504 15 H 0.075 0.925 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.902 3.098 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.160 4.160 23 C -0.080 4.080 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.121 0.879 30 H 0.143 0.857 31 H 0.408 0.592 32 H 0.096 0.904 33 H 0.013 0.987 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.125 0.875 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.039 -3.461 6.152 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.033 3.967 4 C -0.128 4.128 5 C -0.098 4.098 6 C -0.149 4.149 7 C 0.076 3.924 8 N -0.335 5.335 9 C 0.310 3.690 10 O -0.397 6.397 11 C 0.010 3.990 12 H 0.074 0.926 13 C -0.193 4.193 14 C -0.542 4.542 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.181 4.181 23 C -0.099 4.099 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.160 0.840 31 H 0.244 0.756 32 H 0.115 0.885 33 H 0.032 0.968 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.027 -3.196 5.490 19.113 hybrid contribution 0.452 0.459 -0.283 0.703 sum -17.575 -2.738 5.207 18.533 Atomic orbital electron populations 1.22739 0.81418 1.02661 0.99838 1.88001 1.19224 1.27914 1.95355 1.21289 0.90251 0.84688 1.00498 1.19406 0.93505 1.06182 0.93694 1.20902 0.93738 0.97913 0.97213 1.21386 0.93632 1.01338 0.98545 1.18022 0.83923 0.96772 0.93729 1.44152 1.03840 1.52886 1.32581 1.22309 0.92095 0.75174 0.79422 1.90529 1.73106 1.42412 1.33635 1.18912 0.83387 0.96174 1.00490 0.92611 1.21780 1.05402 0.94825 0.97306 1.21122 0.91611 1.32687 1.08797 0.90675 1.24948 0.96886 0.95638 0.96699 1.69861 1.03353 1.44541 1.35761 0.86424 0.78146 0.79799 0.82700 1.20624 1.21244 1.19702 1.20886 0.94459 1.06038 0.96700 1.20701 0.93405 0.98596 0.97175 0.94197 0.94149 0.89720 0.92739 0.92668 0.86083 0.83973 0.75631 0.88537 0.96817 0.94785 0.92854 0.85745 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.57 10.69 -35.23 -0.38 -4.95 16 3 C 0.11 1.19 6.06 36.01 0.22 1.40 16 4 C -0.13 -1.71 5.51 -104.59 -0.58 -2.29 16 5 C -0.08 -1.18 9.69 -39.61 -0.38 -1.56 16 6 C -0.13 -2.26 8.70 -39.39 -0.34 -2.60 16 7 C 0.17 2.92 6.30 -83.69 -0.53 2.39 16 8 N -0.69 -12.33 5.26 -9.86 -0.05 -12.38 16 9 C 0.52 11.65 6.99 -10.98 -0.08 11.58 16 10 O -0.52 -13.22 12.90 5.55 0.07 -13.15 16 11 C 0.03 0.76 2.65 -92.92 -0.25 0.52 16 12 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.14 -3.03 8.86 37.16 0.33 -2.70 16 14 C -0.50 -14.06 8.38 -34.44 -0.29 -14.35 16 15 H 0.08 2.21 6.75 -52.49 -0.35 1.85 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 17 N -0.90 -24.81 11.31 55.43 0.63 -24.18 16 18 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.16 -2.26 9.97 -39.39 -0.39 -2.65 16 23 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.08 -51.92 -0.42 0.12 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.14 2.80 6.22 -52.49 -0.33 2.47 16 31 H 0.41 6.11 8.11 -40.82 -0.33 5.78 16 32 H 0.10 2.39 6.06 -51.93 -0.31 2.07 16 33 H 0.01 0.24 7.47 -51.93 -0.39 -0.15 16 34 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -31.18 314.10 -6.74 -37.92 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.07 Total: 4.22 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.65 Total: -8.80 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.58 Total: -36.56 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.30 Total: -18.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.18 -6.74 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834548436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.225 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds