Wall clock time and date at job start Mon Mar 30 2020 06:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99801 * 2 1 4 4 C 1.50702 * 109.47325 * 180.02562 * 3 2 1 5 5 C 1.38287 * 119.92867 * 89.99586 * 4 3 2 6 6 C 1.38114 * 120.06603 * 179.97438 * 5 4 3 7 7 C 1.38872 * 119.93345 * 0.02562 * 6 5 4 8 8 N 1.39920 * 120.07065 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99826 * 35.08881 * 8 7 6 10 10 O 1.21284 * 120.00321 * 355.38554 * 9 8 7 11 11 C 1.50709 * 119.99773 * 175.38192 * 9 8 7 12 12 H 1.08995 * 109.46958 * 300.00320 * 11 9 8 13 13 C 1.52999 * 109.46757 * 60.00096 * 11 9 8 14 14 C 1.50698 * 109.46835 * 180.02562 * 11 9 8 15 15 H 1.08000 * 120.00258 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99730 * 180.27669 * 14 11 9 17 17 N 1.31512 * 120.00045 * 359.72978 * 16 14 11 18 18 Si 1.86797 * 119.99890 * 179.72295 * 16 14 11 19 19 H 1.48499 * 109.47004 * 90.00340 * 18 16 14 20 20 H 1.48505 * 109.47146 * 209.99934 * 18 16 14 21 21 H 1.48497 * 109.47371 * 329.99886 * 18 16 14 22 22 C 1.38877 * 119.85847 * 0.25565 * 7 6 5 23 23 C 1.38119 * 119.92697 * 359.47279 * 22 7 6 24 24 H 1.09003 * 109.47212 * 299.99594 * 1 2 3 25 25 H 1.08997 * 109.47261 * 60.00004 * 1 2 3 26 26 H 1.09006 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47345 * 59.99809 * 3 2 1 28 28 H 1.09008 * 109.47403 * 300.00001 * 3 2 1 29 29 H 1.07994 * 119.96245 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.02792 * 180.02562 * 6 5 4 31 31 H 0.97002 * 120.00132 * 215.08596 * 8 7 6 32 32 H 1.09006 * 109.46862 * 179.97438 * 13 11 9 33 33 H 1.08993 * 109.47344 * 299.99576 * 13 11 9 34 34 H 1.09009 * 109.47081 * 60.00326 * 13 11 9 35 35 H 0.96998 * 120.00127 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.03462 * 179.74221 * 22 7 6 37 37 H 1.07994 * 119.96639 * 180.27707 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1998 1.1322 -1.1994 6 6 5.5767 1.0238 -1.2033 7 6 6.2708 0.9688 -0.0018 8 7 7.6657 0.8584 -0.0024 9 6 8.3899 1.4742 -0.9577 10 8 7.8301 2.0539 -1.8640 11 6 9.8956 1.4425 -0.8996 12 1 10.2332 1.9065 0.0271 13 6 10.3773 -0.0088 -0.9484 14 6 10.4595 2.1994 -2.0744 15 1 9.7943 2.6571 -2.7916 16 6 11.8249 2.3021 -2.2370 17 7 12.6349 1.7441 -1.3641 18 14 12.5240 3.2336 -3.6975 19 1 12.7102 4.6607 -3.3312 20 1 13.8332 2.6456 -4.0790 21 1 11.5845 3.1352 -4.8432 22 6 5.5772 1.0177 1.2004 23 6 4.2007 1.1318 1.1975 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.6593 1.1747 -2.1334 30 1 6.1128 0.9819 -2.1398 31 1 8.1114 0.3387 0.6848 32 1 11.4663 -0.0317 -0.9069 33 1 9.9694 -0.5558 -0.0985 34 1 10.0396 -0.4728 -1.8752 35 1 13.5954 1.8167 -1.4783 36 1 6.1138 0.9709 2.1364 37 1 3.6610 1.1743 2.1320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834548436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:25 Heat of formation + Delta-G solvation = -81.120407 kcal Electronic energy + Delta-G solvation = -19047.070556 eV Core-core repulsion = 15981.472188 eV Total energy + Delta-G solvation = -3065.598367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48256 -39.83360 -38.40243 -35.86014 -35.74980 -32.84524 -31.89656 -31.40601 -27.87565 -27.23393 -26.19453 -24.51710 -23.90724 -22.31574 -21.01817 -18.94741 -18.24319 -17.64815 -17.29804 -17.10682 -16.83383 -16.50699 -16.03460 -15.41244 -15.26077 -14.97419 -14.62627 -14.30008 -14.27003 -13.75244 -13.47265 -13.11131 -12.99538 -12.74587 -12.64645 -12.50248 -12.29296 -12.15170 -12.09827 -12.03001 -11.20341 -11.08387 -10.62931 -10.59856 -10.36204 -9.85264 -9.05212 -8.17769 -6.28462 0.22010 0.47100 1.40040 1.40932 1.52579 1.78843 2.21620 2.46316 2.66568 3.12146 3.24987 3.86823 3.96735 4.09420 4.17978 4.32983 4.41947 4.49856 4.59379 4.61131 4.69762 4.71669 4.77896 4.89429 4.90412 4.96590 5.10045 5.29597 5.39085 5.48770 5.58832 5.63475 5.72211 5.90196 6.09480 6.16775 6.26221 6.60911 6.80401 7.31692 7.42860 8.88109 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.046371 B = 0.003603 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.682618 B = 7770.132085 C = 8117.734422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.109 3.891 4 C -0.122 4.122 5 C -0.087 4.087 6 C -0.153 4.153 7 C 0.139 3.861 8 N -0.671 5.671 9 C 0.521 3.479 10 O -0.561 6.561 11 C 0.028 3.972 12 H 0.047 0.953 13 C -0.123 4.123 14 C -0.532 4.532 15 H 0.050 0.950 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 0.956 3.044 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.279 1.279 22 C -0.150 4.150 23 C -0.077 4.077 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.422 0.578 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.152 0.848 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.772 -3.657 7.823 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.033 3.967 4 C -0.123 4.123 5 C -0.106 4.106 6 C -0.174 4.174 7 C 0.045 3.955 8 N -0.317 5.317 9 C 0.312 3.688 10 O -0.438 6.438 11 C 0.007 3.993 12 H 0.065 0.935 13 C -0.181 4.181 14 C -0.570 4.570 15 H 0.068 0.932 16 C -0.178 4.178 17 N -0.549 5.549 18 Si 0.782 3.218 19 H -0.200 1.200 20 H -0.199 1.199 21 H -0.204 1.204 22 C -0.170 4.170 23 C -0.095 4.095 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.127 0.873 31 H 0.260 0.740 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.170 0.830 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -19.781 -3.422 7.207 21.329 hybrid contribution 0.835 0.491 -0.746 1.223 sum -18.946 -2.930 6.461 20.230 Atomic orbital electron populations 1.22941 0.79409 1.03748 1.01070 1.87944 1.21439 1.28283 1.95628 1.21341 0.88278 0.84874 1.02215 1.19811 0.95345 1.03980 0.93188 1.21061 0.92744 0.97989 0.98797 1.21267 0.94922 1.03451 0.97724 1.18232 0.83124 0.99346 0.94837 1.43716 1.04490 1.52003 1.31521 1.21857 0.91586 0.75442 0.79920 1.90515 1.73517 1.44402 1.35390 1.18822 0.85004 0.96788 0.98675 0.93483 1.21603 1.03921 0.94022 0.98571 1.21273 0.91982 1.33885 1.09848 0.93216 1.25580 0.96987 0.96293 0.98959 1.69934 1.03614 1.44736 1.36620 0.85587 0.77640 0.78951 0.79669 1.19993 1.19885 1.20401 1.21181 0.95116 1.04288 0.96411 1.21151 0.93018 0.96875 0.98458 0.92604 0.93242 0.88828 0.90338 0.91707 0.84978 0.87279 0.73969 0.90701 0.92751 0.95764 0.92484 0.83007 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.64 10.69 -148.98 -1.59 -10.23 16 3 C 0.11 2.03 6.06 71.24 0.43 2.46 16 4 C -0.12 -3.01 5.51 -19.84 -0.11 -3.12 16 5 C -0.09 -2.57 9.69 22.25 0.22 -2.35 16 6 C -0.15 -5.54 8.70 22.39 0.19 -5.34 16 7 C 0.14 4.69 6.30 38.15 0.24 4.93 16 8 N -0.67 -23.95 5.26 -303.50 -1.60 -25.55 16 9 C 0.52 24.11 6.99 87.66 0.61 24.72 16 10 O -0.56 -29.83 12.90 -3.04 -0.04 -29.87 16 11 C 0.03 1.41 2.65 -12.28 -0.03 1.38 16 12 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.12 -5.55 8.86 71.98 0.64 -4.91 16 14 C -0.53 -30.66 8.38 25.60 0.21 -30.44 16 15 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 16 C 0.02 1.18 5.30 84.66 0.45 1.63 16 17 N -0.91 -50.68 11.31 21.45 0.24 -50.44 16 18 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 22 C -0.15 -3.85 9.97 22.39 0.22 -3.63 16 23 C -0.08 -1.73 9.69 22.25 0.22 -1.51 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 28 H 0.06 1.08 8.08 -2.38 -0.02 1.06 16 29 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.11 4.63 6.22 -2.91 -0.02 4.61 16 31 H 0.42 12.14 8.11 -92.71 -0.75 11.39 16 32 H 0.07 3.72 6.06 -2.38 -0.01 3.71 16 33 H 0.05 1.94 7.47 -2.39 -0.02 1.92 16 34 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -69.32 314.10 3.91 -65.42 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.32 Total: 18.44 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 4.54 Total: -14.63 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -1.35 Total: -75.99 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.63 Total: -40.10 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -69.32 3.91 -65.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834548436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.702 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds