Wall clock time and date at job start Mon Mar 30 2020 06:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 O 1.45194 * 109.47339 * 120.00075 * 2 1 3 13 13 C 1.34787 * 117.00475 * 269.99939 * 12 2 1 14 14 O 1.21552 * 119.99225 * 0.02562 * 13 12 2 15 15 C 1.47103 * 120.00353 * 179.97438 * 13 12 2 16 16 C 1.46748 * 127.02290 * 359.68762 * 15 13 12 17 17 C 1.34434 * 106.37256 * 179.83253 * 16 15 13 18 18 N 1.36427 * 109.08600 * 0.43493 * 17 16 15 19 19 H 0.97001 * 124.81206 * 179.71604 * 18 17 16 20 20 C 1.34629 * 110.38247 * 359.71089 * 18 17 16 21 21 C 1.50697 * 125.90086 * 180.02562 * 20 18 17 22 22 C 1.53785 * 113.60946 * 37.45947 * 21 20 18 23 23 C 1.53788 * 87.07972 * 220.01916 * 22 21 20 24 24 C 1.53775 * 113.61379 * 299.96617 * 21 20 18 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.07999 * 126.81458 * 359.97438 * 16 15 13 30 30 H 1.08001 * 125.45538 * 180.14987 * 17 16 15 31 31 H 1.08994 * 112.85229 * 168.76199 * 21 20 18 32 32 H 1.09000 * 113.61701 * 334.56959 * 22 21 20 33 33 H 1.09001 * 113.61339 * 105.47390 * 22 21 20 34 34 H 1.09002 * 113.61068 * 270.88586 * 23 22 21 35 35 H 1.09000 * 113.61267 * 139.98297 * 23 22 21 36 36 H 1.09005 * 113.61500 * 254.52554 * 24 21 20 37 37 H 1.09000 * 113.62250 * 25.34165 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 8 2.0140 -0.6845 1.1855 13 6 2.2180 0.0670 2.2856 14 8 1.9969 1.2619 2.2549 15 6 2.7072 -0.5589 3.5237 16 6 3.0152 -1.9782 3.7343 17 6 3.4314 -2.0907 5.0077 18 7 3.3955 -0.8618 5.5990 19 1 3.6453 -0.6824 6.5190 20 6 2.9643 0.0668 4.7248 21 6 2.7928 1.5366 5.0097 22 6 3.8809 2.1170 5.9285 23 6 2.7644 2.9279 6.6074 24 6 1.7920 1.8324 6.1392 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.9274 -2.7739 3.0095 30 1 3.7399 -3.0079 5.4872 31 1 2.6208 2.1252 4.1087 32 1 4.3415 1.3760 6.5819 33 1 4.6115 2.7334 5.4047 34 1 2.5855 3.8979 6.1435 35 1 2.8656 2.9879 7.6911 36 1 0.8362 2.2191 5.7855 37 1 1.6803 1.0132 6.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845468069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:25 Heat of formation + Delta-G solvation = -32.573683 kcal Electronic energy + Delta-G solvation = -19678.003040 eV Core-core repulsion = 16614.509816 eV Total energy + Delta-G solvation = -3063.493224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25242 -38.81684 -38.23771 -35.38303 -33.11494 -30.98553 -29.67086 -29.30289 -25.74678 -25.34964 -25.16123 -23.15795 -20.91718 -20.51000 -19.42123 -18.78713 -17.80573 -16.47778 -15.98970 -15.52554 -14.97300 -14.86789 -14.51813 -14.28571 -13.99032 -13.05553 -12.83181 -12.66055 -12.64453 -12.35501 -12.22463 -11.94315 -11.62143 -11.11402 -10.98262 -10.85230 -10.70616 -10.55295 -10.39165 -10.25218 -10.18287 -9.41788 -9.33944 -8.77182 -8.65890 -8.39009 -8.01802 -6.09038 -4.14902 1.90821 2.61779 3.16170 3.30788 3.35930 3.40766 3.98675 4.06596 4.43905 4.48375 4.56896 4.59743 4.87876 5.11322 5.12046 5.23936 5.44219 5.53215 5.57739 5.73469 5.74739 5.85990 5.91054 5.99863 6.13077 6.38360 6.45972 6.78604 6.92362 7.00991 7.04885 7.11934 7.36889 7.50699 7.71523 7.86568 8.08479 8.27970 8.82031 9.09186 9.50422 10.98580 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.004683 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.017665 B = 5977.656069 C = 6513.222331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.046 0.954 4 C -0.517 4.517 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.910 3.090 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 O -0.351 6.351 13 C 0.529 3.471 14 O -0.534 6.534 15 C -0.207 4.207 16 C -0.141 4.141 17 C -0.033 4.033 18 N -0.549 5.549 19 H 0.412 0.588 20 C 0.113 3.887 21 C -0.056 4.056 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.016 0.984 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.265 0.735 29 H 0.151 0.849 30 H 0.168 0.832 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 -1.247 18.976 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.555 4.555 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.737 3.263 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.375 3.625 14 O -0.427 6.427 15 C -0.215 4.215 16 C -0.164 4.164 17 C -0.159 4.159 18 N -0.145 5.145 19 H 0.248 0.752 20 C -0.005 4.005 21 C -0.075 4.075 22 C -0.176 4.176 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.350 -0.825 18.873 19.385 hybrid contribution 0.323 -0.428 -0.494 0.729 sum 4.673 -1.252 18.379 19.005 Atomic orbital electron populations 1.22147 0.97741 0.99988 1.01258 1.20572 0.91259 0.93930 0.77938 0.93635 1.21054 1.32148 1.13319 0.88980 0.91367 1.24875 0.95039 0.95114 0.98987 1.69906 1.36355 1.22629 1.23984 0.86297 0.79294 0.79126 0.81539 1.20424 1.21047 1.19650 1.86555 1.76025 1.43060 1.21005 1.20025 0.74077 0.84606 0.83774 1.90684 1.50697 1.16373 1.84959 1.19775 1.15244 0.94167 0.92293 1.22186 1.03152 0.95370 0.95732 1.21659 1.10980 0.88283 0.94997 1.41384 1.53087 1.07237 1.12780 0.75201 1.20248 1.00103 0.91297 0.88811 1.21629 0.96839 0.88804 1.00180 1.22996 0.96888 0.99480 0.98212 1.22815 0.96312 0.98318 1.00207 1.22964 0.98432 0.98544 0.97137 0.96528 0.94565 0.88405 0.92535 0.83088 0.81478 0.84359 0.90945 0.90655 0.89572 0.91432 0.90574 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.33 37.16 0.35 -3.74 16 2 C 0.22 6.09 2.56 -27.88 -0.07 6.02 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -15.07 8.90 -34.44 -0.31 -15.38 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.97 11.32 55.43 0.63 -25.34 16 8 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 O -0.35 -9.06 9.77 -40.73 -0.40 -9.46 16 13 C 0.53 12.36 7.92 34.33 0.27 12.63 16 14 O -0.53 -13.26 13.93 -19.31 -0.27 -13.53 16 15 C -0.21 -3.86 6.33 -103.01 -0.65 -4.51 16 16 C -0.14 -2.20 11.00 -37.49 -0.41 -2.61 16 17 C -0.03 -0.38 11.87 -16.85 -0.20 -0.58 16 18 N -0.55 -6.04 5.71 -8.88 -0.05 -6.09 16 19 H 0.41 3.01 8.22 -40.82 -0.34 2.67 16 20 C 0.11 1.67 6.27 -81.51 -0.51 1.16 16 21 C -0.06 -0.75 3.94 -90.96 -0.36 -1.11 16 22 C -0.14 -1.38 7.62 -25.91 -0.20 -1.57 16 23 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 24 C -0.13 -1.43 7.63 -25.92 -0.20 -1.63 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.14 2.31 5.99 -51.93 -0.31 2.00 16 32 H 0.07 0.59 7.22 -51.93 -0.37 0.22 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -32.97 312.18 -8.05 -41.03 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.06 Total: 3.23 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.59 Total: -11.13 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.58 Total: -31.44 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.67 Total: -22.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.97 -8.05 -41.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.455 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds