Wall clock time and date at job start Mon Mar 30 2020 06:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 O 1.45194 * 109.47339 * 120.00075 * 2 1 3 13 13 C 1.34787 * 117.00475 * 269.99939 * 12 2 1 14 14 O 1.21552 * 119.99225 * 0.02562 * 13 12 2 15 15 C 1.47103 * 120.00353 * 179.97438 * 13 12 2 16 16 C 1.46748 * 127.02290 * 359.68762 * 15 13 12 17 17 C 1.34434 * 106.37256 * 179.83253 * 16 15 13 18 18 N 1.36427 * 109.08600 * 0.43493 * 17 16 15 19 19 H 0.97001 * 124.81206 * 179.71604 * 18 17 16 20 20 C 1.34629 * 110.38247 * 359.71089 * 18 17 16 21 21 C 1.50697 * 125.90086 * 180.02562 * 20 18 17 22 22 C 1.53785 * 113.60946 * 37.45947 * 21 20 18 23 23 C 1.53788 * 87.07972 * 220.01916 * 22 21 20 24 24 C 1.53775 * 113.61379 * 299.96617 * 21 20 18 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.07999 * 126.81458 * 359.97438 * 16 15 13 30 30 H 1.08001 * 125.45538 * 180.14987 * 17 16 15 31 31 H 1.08994 * 112.85229 * 168.76199 * 21 20 18 32 32 H 1.09000 * 113.61701 * 334.56959 * 22 21 20 33 33 H 1.09001 * 113.61339 * 105.47390 * 22 21 20 34 34 H 1.09002 * 113.61068 * 270.88586 * 23 22 21 35 35 H 1.09000 * 113.61267 * 139.98297 * 23 22 21 36 36 H 1.09005 * 113.61500 * 254.52554 * 24 21 20 37 37 H 1.09000 * 113.62250 * 25.34165 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 8 2.0140 -0.6845 1.1855 13 6 2.2180 0.0670 2.2856 14 8 1.9969 1.2619 2.2549 15 6 2.7072 -0.5589 3.5237 16 6 3.0152 -1.9782 3.7343 17 6 3.4314 -2.0907 5.0077 18 7 3.3955 -0.8618 5.5990 19 1 3.6453 -0.6824 6.5190 20 6 2.9643 0.0668 4.7248 21 6 2.7928 1.5366 5.0097 22 6 3.8809 2.1170 5.9285 23 6 2.7644 2.9279 6.6074 24 6 1.7920 1.8324 6.1392 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.9274 -2.7739 3.0095 30 1 3.7399 -3.0079 5.4872 31 1 2.6208 2.1252 4.1087 32 1 4.3415 1.3760 6.5819 33 1 4.6115 2.7334 5.4047 34 1 2.5855 3.8979 6.1435 35 1 2.8656 2.9879 7.6911 36 1 0.8362 2.2191 5.7855 37 1 1.6803 1.0132 6.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845468069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:25 Heat of formation + Delta-G solvation = -52.502623 kcal Electronic energy + Delta-G solvation = -19678.867223 eV Core-core repulsion = 16614.509816 eV Total energy + Delta-G solvation = -3064.357407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.39134 -40.69288 -39.14199 -37.37543 -35.28308 -32.36235 -31.38628 -30.70767 -27.46807 -26.57208 -26.43377 -24.69726 -22.60911 -21.80593 -20.49195 -20.33740 -18.92852 -18.60548 -17.79423 -16.84032 -16.67947 -16.40960 -16.10286 -15.40947 -15.24967 -14.80351 -14.28293 -14.06339 -13.89202 -13.58110 -13.44142 -13.26085 -13.17152 -13.07741 -12.94281 -12.78993 -12.39289 -12.14730 -11.72755 -11.54519 -11.42193 -11.39554 -11.07761 -10.95276 -10.58810 -9.85745 -9.14930 -8.27867 -6.44976 0.51093 1.41184 1.44461 1.49402 1.55729 1.99038 2.33661 2.37860 2.59363 3.02322 3.57151 3.65730 3.75766 3.97268 4.09499 4.21261 4.32705 4.43015 4.54407 4.68218 4.76693 4.77211 4.80918 4.85253 4.98318 5.03833 5.05816 5.08149 5.18197 5.30666 5.47739 5.52152 5.63893 5.71756 5.93099 5.95535 6.15337 6.60134 6.64727 7.10669 7.29468 8.80440 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.004683 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.017665 B = 5977.656069 C = 6513.222331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.218 3.782 3 H 0.004 0.996 4 C -0.549 4.549 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.986 3.014 9 H -0.265 1.265 10 H -0.275 1.275 11 H -0.266 1.266 12 O -0.362 6.362 13 C 0.517 3.483 14 O -0.565 6.565 15 C -0.265 4.265 16 C -0.178 4.178 17 C 0.010 3.990 18 N -0.523 5.523 19 H 0.437 0.563 20 C 0.132 3.868 21 C -0.079 4.079 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.128 4.128 25 H 0.019 0.981 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.271 0.729 29 H 0.144 0.856 30 H 0.222 0.778 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -2.873 21.487 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.165 3.835 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.083 0.917 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.190 1.190 10 H -0.200 1.200 11 H -0.190 1.190 12 O -0.278 6.278 13 C 0.366 3.634 14 O -0.460 6.460 15 C -0.274 4.274 16 C -0.201 4.201 17 C -0.117 4.117 18 N -0.120 5.120 19 H 0.278 0.722 20 C 0.012 3.988 21 C -0.098 4.098 22 C -0.164 4.164 23 C -0.164 4.164 24 C -0.166 4.166 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.162 0.838 30 H 0.238 0.762 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.689 -2.456 21.439 22.316 hybrid contribution -0.077 0.121 -1.159 1.168 sum 5.612 -2.334 20.280 21.171 Atomic orbital electron populations 1.21959 0.96884 1.00197 1.00622 1.20305 0.91952 0.91984 0.79293 0.97829 1.21293 1.33442 1.13863 0.90023 0.91685 1.25870 0.94671 0.95669 1.02157 1.70025 1.36668 1.23667 1.25228 0.85141 0.78995 0.78128 0.76867 1.18996 1.20027 1.19031 1.86540 1.76667 1.43307 1.21305 1.20959 0.73525 0.84542 0.84379 1.90655 1.52318 1.17568 1.85412 1.19774 1.19417 0.96502 0.91662 1.22269 1.06007 0.93794 0.98037 1.22290 1.06723 0.89563 0.93129 1.41365 1.51018 1.06287 1.13367 0.72185 1.20309 0.98151 0.92237 0.88129 1.21659 1.00539 0.87694 0.99923 1.23024 0.96143 0.99855 0.97345 1.22767 0.94579 0.97244 1.01854 1.23004 0.97389 0.99989 0.96192 0.96142 0.93738 0.89894 0.91946 0.83815 0.76170 0.88794 0.87939 0.91248 0.90268 0.88399 0.92235 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.79 9.33 71.98 0.67 -7.12 16 2 C 0.22 13.13 2.56 29.85 0.08 13.21 16 3 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 4 C -0.55 -33.31 8.90 25.60 0.23 -33.08 16 5 H 0.06 3.88 7.81 -2.91 -0.02 3.86 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -55.00 11.32 21.45 0.24 -54.76 16 8 Si 0.99 44.63 29.54 68.60 2.03 46.66 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 O -0.36 -20.04 9.77 -56.99 -0.56 -20.59 16 13 C 0.52 26.02 7.92 70.15 0.56 26.57 16 14 O -0.56 -30.64 13.93 19.67 0.27 -30.37 16 15 C -0.27 -10.25 6.33 -18.82 -0.12 -10.37 16 16 C -0.18 -5.47 11.00 23.63 0.26 -5.21 16 17 C 0.01 0.19 11.87 83.11 0.99 1.17 16 18 N -0.52 -9.46 5.71 -182.02 -1.04 -10.50 16 19 H 0.44 3.87 8.22 -92.71 -0.76 3.10 16 20 C 0.13 3.80 6.27 42.04 0.26 4.06 16 21 C -0.08 -2.11 3.94 -11.01 -0.04 -2.15 16 22 C -0.13 -2.22 7.62 31.12 0.24 -1.98 16 23 C -0.13 -1.97 8.08 31.12 0.25 -1.72 16 24 C -0.13 -2.56 7.63 31.12 0.24 -2.33 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.08 4.88 6.07 -2.38 -0.01 4.87 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 30 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.09 3.41 5.99 -2.39 -0.01 3.40 16 32 H 0.10 1.18 7.22 -2.39 -0.02 1.17 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 Total: -1.00 -78.36 312.18 5.32 -73.04 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.32 Total: 14.12 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.05 Total: -17.59 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -0.80 Total: -65.26 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.28 Total: -50.96 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -78.36 5.32 -73.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.538 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds