Wall clock time and date at job start Mon Mar 30 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46589 * 2 1 4 4 C 1.50697 * 109.47316 * 119.99905 * 2 1 3 5 5 H 1.08001 * 120.00125 * 119.99972 * 4 2 1 6 6 C 1.37878 * 120.00138 * 300.00519 * 4 2 1 7 7 N 1.31517 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47092 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47498 * 119.99836 * 8 6 4 11 11 H 1.48502 * 109.46997 * 239.99747 * 8 6 4 12 12 O 1.45201 * 109.47176 * 240.00378 * 2 1 3 13 13 C 1.34784 * 117.00180 * 89.99763 * 12 2 1 14 14 O 1.21543 * 119.99981 * 359.97438 * 13 12 2 15 15 C 1.47113 * 119.99782 * 179.97438 * 13 12 2 16 16 C 1.46740 * 127.02493 * 359.68256 * 15 13 12 17 17 C 1.34432 * 106.37184 * 179.83031 * 16 15 13 18 18 N 1.36428 * 109.08644 * 0.44126 * 17 16 15 19 19 H 0.96994 * 124.80448 * 179.70933 * 18 17 16 20 20 C 1.34620 * 110.37815 * 359.70583 * 18 17 16 21 21 C 1.50705 * 125.89552 * 180.02562 * 20 18 17 22 22 C 1.53789 * 113.60992 * 37.45947 * 21 20 18 23 23 C 1.53787 * 87.07561 * 220.01713 * 22 21 20 24 24 C 1.53772 * 87.08284 * 25.43532 * 23 22 21 25 25 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47407 * 299.99860 * 1 2 3 27 27 H 1.09005 * 109.47372 * 60.00648 * 1 2 3 28 28 H 0.97003 * 120.00516 * 179.97438 * 7 6 4 29 29 H 1.08001 * 126.81244 * 359.97438 * 16 15 13 30 30 H 1.08005 * 125.45334 * 180.14820 * 17 16 15 31 31 H 1.08994 * 112.84995 * 168.76368 * 21 20 18 32 32 H 1.08993 * 113.61418 * 334.56246 * 22 21 20 33 33 H 1.08999 * 113.61203 * 105.47308 * 22 21 20 34 34 H 1.08996 * 113.61626 * 270.88229 * 23 22 21 35 35 H 1.09005 * 113.68599 * 139.99811 * 23 22 21 36 36 H 1.09003 * 113.61584 * 220.01890 * 24 23 22 37 37 H 1.09002 * 113.69678 * 89.12596 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.1475 -2.2862 3.6038 10 1 3.1472 -0.1856 4.8161 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6844 -1.1856 13 6 2.2179 0.0672 -2.2857 14 8 1.9968 1.2620 -2.2550 15 6 2.7082 -0.5586 -3.5235 16 6 3.0295 -1.9754 -3.7302 17 6 3.4342 -2.0898 -5.0070 18 7 3.3977 -0.8609 -5.5984 19 1 3.6478 -0.6816 -6.5182 20 6 2.9653 0.0672 -4.7244 21 6 2.7919 1.5368 -5.0100 22 6 2.2633 1.8314 -6.4238 23 6 3.2463 3.0135 -6.4596 24 6 4.0920 2.2395 -5.4348 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 0.7087 1.1614 3.4844 29 1 2.9534 -2.7691 -3.0017 30 1 3.7436 -3.0069 -5.4863 31 1 2.2501 2.0599 -4.2220 32 1 2.4938 1.0498 -7.1477 33 1 1.2162 2.1334 -6.4443 34 1 2.8281 3.9412 -6.0691 35 1 3.7392 3.1441 -7.4231 36 1 4.5213 2.8710 -4.6569 37 1 4.8230 1.5692 -5.8870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845468070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:28 Heat of formation + Delta-G solvation = -32.593461 kcal Electronic energy + Delta-G solvation = -19677.719237 eV Core-core repulsion = 16614.225156 eV Total energy + Delta-G solvation = -3063.494081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25356 -38.81832 -38.23690 -35.38460 -33.11568 -30.98623 -29.67053 -29.30399 -25.74556 -25.34906 -25.16345 -23.15822 -20.91604 -20.51271 -19.42065 -18.78918 -17.80374 -16.48058 -15.99207 -15.51713 -14.97688 -14.88242 -14.51208 -14.27989 -13.98726 -13.05513 -12.83616 -12.65761 -12.65160 -12.35705 -12.21321 -11.94616 -11.62641 -11.10759 -10.99800 -10.85626 -10.70537 -10.55135 -10.38695 -10.23374 -10.18843 -9.41111 -9.35031 -8.76396 -8.65888 -8.39477 -8.01869 -6.09351 -4.15064 1.90874 2.61800 3.16203 3.29497 3.36081 3.41944 3.98765 4.06467 4.43898 4.48363 4.56951 4.59847 4.87972 5.11392 5.12027 5.23739 5.44432 5.53254 5.57842 5.73446 5.74507 5.85938 5.92000 5.99917 6.13161 6.38412 6.45894 6.78414 6.92386 7.00914 7.04776 7.11925 7.36791 7.50720 7.71568 7.86478 8.08351 8.27843 8.82121 9.09240 9.50301 10.98327 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.004686 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.998388 B = 5973.630105 C = 6478.862543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.516 4.516 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.910 3.090 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 O -0.351 6.351 13 C 0.529 3.471 14 O -0.534 6.534 15 C -0.207 4.207 16 C -0.141 4.141 17 C -0.033 4.033 18 N -0.549 5.549 19 H 0.412 0.588 20 C 0.113 3.887 21 C -0.056 4.056 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.016 0.984 28 H 0.264 0.736 29 H 0.151 0.849 30 H 0.168 0.832 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -1.198 -18.881 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.554 4.554 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.737 3.263 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.208 1.208 12 O -0.266 6.266 13 C 0.375 3.625 14 O -0.427 6.427 15 C -0.215 4.215 16 C -0.164 4.164 17 C -0.159 4.159 18 N -0.145 5.145 19 H 0.248 0.752 20 C -0.005 4.005 21 C -0.074 4.074 22 C -0.176 4.176 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.169 0.831 30 H 0.185 0.815 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.696 -0.781 -18.780 19.374 hybrid contribution 0.330 -0.409 0.501 0.726 sum 5.026 -1.190 -18.279 18.995 Atomic orbital electron populations 1.22146 0.97736 0.99993 1.01259 1.20577 0.91268 0.93937 0.77952 0.93634 1.21094 1.32056 1.13305 0.88966 0.91310 1.24880 0.95038 0.95130 0.99003 1.69920 1.36388 1.22689 1.23878 0.86245 0.78593 0.79515 0.81931 1.19491 1.20826 1.20794 1.86557 1.76028 1.43063 1.20995 1.20024 0.74082 0.84596 0.83780 1.90682 1.50827 1.16367 1.84833 1.19775 1.15114 0.94212 0.92384 1.22185 1.03204 0.95409 0.95639 1.21660 1.11088 0.88303 0.94876 1.41381 1.53042 1.07233 1.12829 0.75201 1.20247 0.99995 0.91275 0.88943 1.21630 0.98734 0.88246 0.98839 1.22994 1.00221 0.98270 0.96074 1.22812 0.97699 0.97808 0.99333 1.22965 0.96004 0.99048 0.99077 0.94557 0.88399 0.96534 0.92591 0.83086 0.81478 0.84372 0.90949 0.90689 0.89584 0.91432 0.90530 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.33 37.16 0.35 -3.74 16 2 C 0.22 6.08 2.56 -27.89 -0.07 6.01 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -15.05 8.90 -34.44 -0.31 -15.35 16 5 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.97 11.32 55.43 0.63 -25.34 16 8 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 O -0.35 -9.06 9.77 -40.72 -0.40 -9.46 16 13 C 0.53 12.36 7.92 34.33 0.27 12.63 16 14 O -0.53 -13.26 13.93 -19.30 -0.27 -13.53 16 15 C -0.21 -3.86 6.33 -103.01 -0.65 -4.51 16 16 C -0.14 -2.20 11.00 -37.49 -0.41 -2.61 16 17 C -0.03 -0.38 11.87 -16.85 -0.20 -0.58 16 18 N -0.55 -6.04 5.71 -8.88 -0.05 -6.09 16 19 H 0.41 3.01 8.22 -40.82 -0.34 2.67 16 20 C 0.11 1.67 6.27 -81.51 -0.51 1.16 16 21 C -0.06 -0.75 3.94 -90.95 -0.36 -1.11 16 22 C -0.14 -1.36 7.62 -25.91 -0.20 -1.56 16 23 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 24 C -0.13 -1.45 7.63 -25.92 -0.20 -1.65 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.17 1.28 8.06 -52.48 -0.42 0.85 16 31 H 0.14 2.30 5.99 -51.93 -0.31 1.99 16 32 H 0.07 0.58 7.21 -51.93 -0.37 0.21 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -33.00 312.18 -8.05 -41.05 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.06 Total: 3.21 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.59 Total: -11.14 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.58 Total: -31.43 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.67 Total: -22.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.00 -8.05 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.457 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds