Wall clock time and date at job start Mon Mar 30 2020 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46589 * 2 1 4 4 C 1.50697 * 109.47316 * 119.99905 * 2 1 3 5 5 H 1.08001 * 120.00125 * 119.99972 * 4 2 1 6 6 C 1.37878 * 120.00138 * 300.00519 * 4 2 1 7 7 N 1.31517 * 119.99964 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47092 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47498 * 119.99836 * 8 6 4 11 11 H 1.48502 * 109.46997 * 239.99747 * 8 6 4 12 12 O 1.45201 * 109.47176 * 240.00378 * 2 1 3 13 13 C 1.34784 * 117.00180 * 89.99763 * 12 2 1 14 14 O 1.21543 * 119.99981 * 359.97438 * 13 12 2 15 15 C 1.47113 * 119.99782 * 179.97438 * 13 12 2 16 16 C 1.46740 * 127.02493 * 359.68256 * 15 13 12 17 17 C 1.34432 * 106.37184 * 179.83031 * 16 15 13 18 18 N 1.36428 * 109.08644 * 0.44126 * 17 16 15 19 19 H 0.96994 * 124.80448 * 179.70933 * 18 17 16 20 20 C 1.34620 * 110.37815 * 359.70583 * 18 17 16 21 21 C 1.50705 * 125.89552 * 180.02562 * 20 18 17 22 22 C 1.53789 * 113.60992 * 37.45947 * 21 20 18 23 23 C 1.53787 * 87.07561 * 220.01713 * 22 21 20 24 24 C 1.53772 * 87.08284 * 25.43532 * 23 22 21 25 25 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47407 * 299.99860 * 1 2 3 27 27 H 1.09005 * 109.47372 * 60.00648 * 1 2 3 28 28 H 0.97003 * 120.00516 * 179.97438 * 7 6 4 29 29 H 1.08001 * 126.81244 * 359.97438 * 16 15 13 30 30 H 1.08005 * 125.45334 * 180.14820 * 17 16 15 31 31 H 1.08994 * 112.84995 * 168.76368 * 21 20 18 32 32 H 1.08993 * 113.61418 * 334.56246 * 22 21 20 33 33 H 1.08999 * 113.61203 * 105.47308 * 22 21 20 34 34 H 1.08996 * 113.61626 * 270.88229 * 23 22 21 35 35 H 1.09005 * 113.68599 * 139.99811 * 23 22 21 36 36 H 1.09003 * 113.61584 * 220.01890 * 24 23 22 37 37 H 1.09002 * 113.69678 * 89.12596 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.1475 -2.2862 3.6038 10 1 3.1472 -0.1856 4.8161 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6844 -1.1856 13 6 2.2179 0.0672 -2.2857 14 8 1.9968 1.2620 -2.2550 15 6 2.7082 -0.5586 -3.5235 16 6 3.0295 -1.9754 -3.7302 17 6 3.4342 -2.0898 -5.0070 18 7 3.3977 -0.8609 -5.5984 19 1 3.6478 -0.6816 -6.5182 20 6 2.9653 0.0672 -4.7244 21 6 2.7919 1.5368 -5.0100 22 6 2.2633 1.8314 -6.4238 23 6 3.2463 3.0135 -6.4596 24 6 4.0920 2.2395 -5.4348 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 0.7087 1.1614 3.4844 29 1 2.9534 -2.7691 -3.0017 30 1 3.7436 -3.0069 -5.4863 31 1 2.2501 2.0599 -4.2220 32 1 2.4938 1.0498 -7.1477 33 1 1.2162 2.1334 -6.4443 34 1 2.8281 3.9412 -6.0691 35 1 3.7392 3.1441 -7.4231 36 1 4.5213 2.8710 -4.6569 37 1 4.8230 1.5692 -5.8870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845468070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:27 Heat of formation + Delta-G solvation = -52.541458 kcal Electronic energy + Delta-G solvation = -19678.584247 eV Core-core repulsion = 16614.225156 eV Total energy + Delta-G solvation = -3064.359091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.39276 -40.69422 -39.14248 -37.37688 -35.28379 -32.36302 -31.38700 -30.70781 -27.47040 -26.57281 -26.43369 -24.69791 -22.60925 -21.80774 -20.49239 -20.33903 -18.92674 -18.60818 -17.79853 -16.84314 -16.66533 -16.42821 -16.09903 -15.40618 -15.24421 -14.80860 -14.29293 -14.06434 -13.88416 -13.58607 -13.44074 -13.26322 -13.16817 -13.08517 -12.94310 -12.80052 -12.38913 -12.13204 -11.72911 -11.55291 -11.42080 -11.39709 -11.06831 -10.94918 -10.59614 -9.85790 -9.14976 -8.28187 -6.45127 0.51135 1.41185 1.42898 1.49385 1.57004 1.99093 2.33542 2.37907 2.59299 3.02065 3.57101 3.65605 3.75795 3.97218 4.09505 4.21257 4.32671 4.42987 4.54351 4.68173 4.76614 4.77305 4.80974 4.85061 4.98300 5.03864 5.05779 5.08149 5.18219 5.30649 5.47799 5.52095 5.63888 5.71754 5.93077 5.95513 6.15236 6.60235 6.64776 7.10644 7.29380 8.80365 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.004686 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.998388 B = 5973.630105 C = 6478.862543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.218 3.782 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.065 0.935 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.986 3.014 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.269 1.269 12 O -0.362 6.362 13 C 0.517 3.483 14 O -0.565 6.565 15 C -0.265 4.265 16 C -0.178 4.178 17 C 0.010 3.990 18 N -0.523 5.523 19 H 0.437 0.563 20 C 0.132 3.868 21 C -0.079 4.079 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.130 4.130 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.020 0.980 28 H 0.271 0.729 29 H 0.144 0.856 30 H 0.222 0.778 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -2.800 -21.381 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.164 3.836 3 H 0.022 0.978 4 C -0.585 4.585 5 H 0.083 0.917 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.188 1.188 10 H -0.199 1.199 11 H -0.194 1.194 12 O -0.278 6.278 13 C 0.366 3.634 14 O -0.459 6.459 15 C -0.274 4.274 16 C -0.201 4.201 17 C -0.117 4.117 18 N -0.120 5.120 19 H 0.278 0.722 20 C 0.012 3.988 21 C -0.098 4.098 22 C -0.162 4.162 23 C -0.164 4.164 24 C -0.167 4.167 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.162 0.838 30 H 0.238 0.762 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.062 -2.387 -21.335 22.308 hybrid contribution -0.073 0.134 1.165 1.175 sum 5.989 -2.253 -20.170 21.161 Atomic orbital electron populations 1.21959 0.96875 1.00214 1.00629 1.20309 0.91966 0.91986 0.79302 0.97829 1.21322 1.33352 1.13825 0.90014 0.91690 1.25875 0.94673 0.95685 1.02166 1.70035 1.36689 1.23718 1.25170 0.85090 0.78404 0.78377 0.77235 1.18786 1.19932 1.19393 1.86542 1.76669 1.43312 1.21294 1.20957 0.73528 0.84535 0.84384 1.90652 1.52442 1.17562 1.85289 1.19774 1.19288 0.96560 0.91732 1.22267 1.06048 0.93850 0.97945 1.22290 1.06826 0.89577 0.93015 1.41361 1.50991 1.06272 1.13406 0.72185 1.20307 0.98077 0.92205 0.88241 1.21662 1.00834 0.87331 0.99968 1.23015 1.00240 0.99359 0.93616 1.22764 0.96734 0.97002 0.99941 1.23012 0.95315 0.99157 0.99254 0.93718 0.89893 0.96132 0.91950 0.83823 0.76170 0.88753 0.87930 0.91113 0.90264 0.88413 0.92364 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.80 9.33 71.98 0.67 -7.13 16 2 C 0.22 13.11 2.56 29.85 0.08 13.19 16 3 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 4 C -0.55 -33.25 8.90 25.60 0.23 -33.02 16 5 H 0.06 3.88 7.81 -2.91 -0.02 3.86 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -55.00 11.32 21.45 0.24 -54.76 16 8 Si 0.99 44.66 29.54 68.60 2.03 46.68 16 9 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 12 O -0.36 -20.03 9.77 -56.96 -0.56 -20.59 16 13 C 0.52 26.01 7.92 70.15 0.56 26.57 16 14 O -0.56 -30.63 13.93 19.70 0.27 -30.35 16 15 C -0.27 -10.25 6.33 -18.82 -0.12 -10.37 16 16 C -0.18 -5.47 11.00 23.62 0.26 -5.21 16 17 C 0.01 0.19 11.87 83.11 0.99 1.17 16 18 N -0.52 -9.46 5.71 -182.02 -1.04 -10.50 16 19 H 0.44 3.87 8.22 -92.71 -0.76 3.10 16 20 C 0.13 3.80 6.27 42.04 0.26 4.06 16 21 C -0.08 -2.11 3.94 -11.01 -0.04 -2.15 16 22 C -0.12 -2.16 7.62 31.13 0.24 -1.93 16 23 C -0.13 -1.97 8.08 31.12 0.25 -1.72 16 24 C -0.13 -2.65 7.63 31.12 0.24 -2.41 16 25 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.08 4.88 6.07 -2.39 -0.01 4.87 16 27 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 29 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.09 3.42 5.99 -2.39 -0.01 3.40 16 32 H 0.10 1.16 7.21 -2.39 -0.02 1.14 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.54 8.09 -2.39 -0.02 1.53 16 Total: -1.00 -78.40 312.18 5.32 -73.08 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.32 Total: 14.05 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 4.05 Total: -17.61 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.80 Total: -65.26 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.28 Total: -50.94 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -78.40 5.32 -73.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.535 kcal (2) G-P(sol) polarization free energy of solvation -78.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds