Wall clock time and date at job start Mon Mar 30 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 O 1.45199 * 109.47235 * 359.97438 * 8 7 6 10 10 C 1.34224 * 117.00095 * 179.97438 * 9 8 7 11 11 O 1.20829 * 120.00334 * 0.02562 * 10 9 8 12 12 C 1.50707 * 120.00086 * 179.97438 * 10 9 8 13 13 C 1.53003 * 109.46923 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46498 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46785 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00255 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00088 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99775 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47348 * 90.00138 * 19 17 15 21 21 H 1.48503 * 109.47179 * 210.00211 * 19 17 15 22 22 H 1.48506 * 109.46872 * 329.99764 * 19 17 15 23 23 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 24 24 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 25 25 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 26 26 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 27 27 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 28 28 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47122 * 120.00344 * 8 7 6 30 30 H 1.09004 * 109.47054 * 240.00168 * 8 7 6 31 31 H 1.08995 * 109.46795 * 300.00341 * 12 10 9 32 32 H 1.09001 * 109.46399 * 60.00451 * 12 10 9 33 33 H 1.08994 * 109.46828 * 299.99833 * 13 12 10 34 34 H 1.08992 * 109.47265 * 60.00202 * 13 12 10 35 35 H 1.09000 * 109.47468 * 299.99689 * 14 13 12 36 36 H 1.09000 * 109.47274 * 60.00304 * 14 13 12 37 37 H 0.97004 * 119.99707 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 8 2.4576 -3.5950 -0.0012 10 6 1.9709 -4.8459 -0.0014 11 8 0.7766 -5.0296 -0.0007 12 6 2.9139 -6.0214 -0.0038 13 6 2.1079 -7.3219 -0.0041 14 6 3.0654 -8.5152 -0.0058 15 6 2.2715 -9.7962 -0.0056 16 1 1.1919 -9.7625 -0.0039 17 6 2.9232 -11.0112 -0.0064 18 7 2.2304 -12.1290 -0.0067 19 14 4.7903 -11.0695 -0.0072 20 1 5.2856 -11.0857 1.3926 21 1 5.2470 -12.2966 -0.7080 22 1 5.3226 -9.8727 -0.7069 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6967 2.1378 0.0043 27 1 4.1582 2.0756 0.0001 28 1 4.1586 -2.0749 0.0010 29 1 0.8659 -2.5831 0.8906 30 1 0.8653 -2.5819 -0.8894 31 1 3.5407 -5.9825 -0.8946 32 1 3.5434 -5.9839 0.8854 33 1 1.4808 -7.3609 0.8865 34 1 1.4787 -7.3591 -0.8933 35 1 3.6928 -8.4764 -0.8963 36 1 3.6942 -8.4778 0.8837 37 1 2.6889 -12.9838 -0.0069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846921239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:34 Heat of formation + Delta-G solvation = -73.650661 kcal Electronic energy + Delta-G solvation = -18535.381341 eV Core-core repulsion = 15470.106886 eV Total energy + Delta-G solvation = -3065.274455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87855 -40.12996 -36.75701 -34.60448 -34.45743 -32.36151 -32.06581 -29.00339 -28.34060 -26.93740 -24.22800 -22.93992 -21.89162 -20.94447 -19.91743 -17.68611 -17.10543 -16.76961 -16.67834 -16.40078 -16.12835 -15.05486 -15.01960 -14.27140 -14.20448 -13.76797 -13.26674 -13.17235 -13.09491 -13.04417 -12.70072 -12.54058 -12.06621 -11.77766 -11.73435 -11.06648 -11.01546 -10.82917 -10.43168 -9.98599 -9.79724 -9.77980 -9.73973 -9.69166 -9.26022 -9.19809 -8.53845 -6.03645 -4.02195 0.75393 0.89158 2.34658 2.58352 3.30968 3.38543 3.41000 3.44850 4.07115 4.30197 4.37308 4.45072 4.49386 4.67493 4.87554 4.95476 5.03894 5.09899 5.14390 5.18442 5.29553 5.43483 5.46354 5.46600 5.57748 5.71404 5.90861 5.96460 6.36730 6.40730 6.43637 6.56978 6.82764 7.28439 7.37962 7.68611 7.77944 7.86561 8.54577 9.02102 9.57985 11.09851 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041406 B = 0.003064 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.070653 B = 9134.960944 C = 9774.678793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.175 4.175 4 C 0.099 3.901 5 N -0.488 5.488 6 C 0.125 3.875 7 C -0.146 4.146 8 C 0.114 3.886 9 O -0.361 6.361 10 C 0.463 3.537 11 O -0.503 6.503 12 C -0.114 4.114 13 C -0.092 4.092 14 C -0.014 4.014 15 C -0.521 4.521 16 H 0.073 0.927 17 C 0.065 3.935 18 N -0.903 5.903 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.156 0.844 28 H 0.167 0.833 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 27.822 -0.037 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 C -0.194 4.194 4 C -0.058 4.058 5 N -0.196 5.196 6 C -0.032 4.032 7 C -0.148 4.148 8 C 0.040 3.960 9 O -0.279 6.279 10 C 0.307 3.693 11 O -0.390 6.390 12 C -0.152 4.152 13 C -0.130 4.130 14 C -0.051 4.051 15 C -0.559 4.559 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.154 0.846 27 H 0.173 0.827 28 H 0.185 0.815 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.004 27.605 -0.039 27.623 hybrid contribution -0.131 -0.059 0.021 0.146 sum 0.872 27.546 -0.018 27.559 Atomic orbital electron populations 1.20912 0.90006 1.03794 1.03337 1.20062 0.96832 0.92030 0.95374 1.21986 0.95654 0.98329 1.03479 1.22828 0.91782 0.96475 0.94690 1.67793 1.41098 0.98427 1.12323 1.22774 0.91015 0.96561 0.92825 1.20535 0.95920 0.93930 1.04419 1.21531 0.89686 0.81572 1.03255 1.86463 1.40863 1.15816 1.84777 1.24341 0.89802 0.83416 0.71782 1.90670 1.17624 1.85757 1.44901 1.21733 0.97927 0.90136 1.05385 1.21401 0.98240 0.90528 1.02850 1.19598 0.95346 0.93716 0.96457 1.21124 0.95123 0.88840 1.50834 0.90918 1.25048 0.98342 0.95619 0.94582 1.69921 1.35694 0.97525 1.51089 0.86761 0.86228 0.77676 0.78497 1.20283 1.21417 1.18933 0.90035 0.90691 0.90601 0.84567 0.82681 0.81543 0.89647 0.89661 0.87929 0.87933 0.91807 0.91775 0.96373 0.96810 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.68 36.00 0.35 -0.39 16 2 C -0.03 -0.29 5.92 -104.32 -0.62 -0.91 16 3 C -0.17 -1.30 9.82 -39.44 -0.39 -1.69 16 4 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 5 N -0.49 -5.53 10.36 -13.25 -0.14 -5.66 16 6 C 0.13 1.39 10.55 -17.55 -0.19 1.21 16 7 C -0.15 -1.48 5.90 -104.48 -0.62 -2.10 16 8 C 0.11 1.22 4.66 36.01 0.17 1.39 16 9 O -0.36 -4.58 8.72 -39.24 -0.34 -4.92 16 10 C 0.46 6.94 7.96 36.01 0.29 7.22 16 11 O -0.50 -8.96 15.73 -18.75 -0.29 -9.26 16 12 C -0.11 -1.70 5.81 -27.88 -0.16 -1.86 16 13 C -0.09 -1.82 4.44 -26.73 -0.12 -1.94 16 14 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 15 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 16 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 19 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.46 6.79 -51.93 -0.35 0.11 16 25 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 26 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 27 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 28 H 0.17 1.78 7.00 -52.49 -0.37 1.42 16 29 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 30 H 0.09 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -33.39 317.49 -7.17 -40.57 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.26 Total: -2.79 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.02 Total: -12.29 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.64 Total: -32.91 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.64 Total: -14.18 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.39 -7.17 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846921239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.085 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds