Wall clock time and date at job start Mon Mar 30 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78768 * 2 1 4 4 C 1.38185 * 119.16016 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.76785 * 0.02562 * 4 3 2 6 6 C 1.31860 * 121.72574 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76174 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41702 * 179.97438 * 7 6 5 9 9 O 1.45199 * 109.47235 * 359.97438 * 8 7 6 10 10 C 1.34224 * 117.00095 * 179.97438 * 9 8 7 11 11 O 1.20829 * 120.00334 * 0.02562 * 10 9 8 12 12 C 1.50707 * 120.00086 * 179.97438 * 10 9 8 13 13 C 1.53003 * 109.46923 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46498 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46785 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00255 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00088 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99775 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47348 * 90.00138 * 19 17 15 21 21 H 1.48503 * 109.47179 * 210.00211 * 19 17 15 22 22 H 1.48506 * 109.46872 * 329.99764 * 19 17 15 23 23 H 1.08998 * 109.46474 * 90.00522 * 1 2 3 24 24 H 1.08995 * 109.47240 * 210.00075 * 1 2 3 25 25 H 1.09002 * 109.47392 * 330.00783 * 1 2 3 26 26 H 1.07995 * 120.41697 * 0.26627 * 3 2 1 27 27 H 1.08003 * 119.60983 * 179.97438 * 4 3 2 28 28 H 1.08001 * 119.61792 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47122 * 120.00344 * 8 7 6 30 30 H 1.09004 * 109.47054 * 240.00168 * 8 7 6 31 31 H 1.08995 * 109.46795 * 300.00341 * 12 10 9 32 32 H 1.09001 * 109.46399 * 60.00451 * 12 10 9 33 33 H 1.08994 * 109.46828 * 299.99833 * 13 12 10 34 34 H 1.08992 * 109.47265 * 60.00202 * 13 12 10 35 35 H 1.09000 * 109.47468 * 299.99689 * 14 13 12 36 36 H 1.09000 * 109.47274 * 60.00304 * 14 13 12 37 37 H 0.97004 * 119.99707 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1515 0.0005 7 6 2.2167 -1.1908 0.0011 8 6 1.4909 -2.5115 0.0005 9 8 2.4576 -3.5950 -0.0012 10 6 1.9709 -4.8459 -0.0014 11 8 0.7766 -5.0296 -0.0007 12 6 2.9139 -6.0214 -0.0038 13 6 2.1079 -7.3219 -0.0041 14 6 3.0654 -8.5152 -0.0058 15 6 2.2715 -9.7962 -0.0056 16 1 1.1919 -9.7625 -0.0039 17 6 2.9232 -11.0112 -0.0064 18 7 2.2304 -12.1290 -0.0067 19 14 4.7903 -11.0695 -0.0072 20 1 5.2856 -11.0857 1.3926 21 1 5.2470 -12.2966 -0.7080 22 1 5.3226 -9.8727 -0.7069 23 1 -0.3632 -0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6967 2.1378 0.0043 27 1 4.1582 2.0756 0.0001 28 1 4.1586 -2.0749 0.0010 29 1 0.8659 -2.5831 0.8906 30 1 0.8653 -2.5819 -0.8894 31 1 3.5407 -5.9825 -0.8946 32 1 3.5434 -5.9839 0.8854 33 1 1.4808 -7.3609 0.8865 34 1 1.4787 -7.3591 -0.8933 35 1 3.6928 -8.4764 -0.8963 36 1 3.6942 -8.4778 0.8837 37 1 2.6889 -12.9838 -0.0069 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846921239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:34 Heat of formation + Delta-G solvation = -93.798719 kcal Electronic energy + Delta-G solvation = -18536.255026 eV Core-core repulsion = 15470.106886 eV Total energy + Delta-G solvation = -3066.148140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79527 -41.05556 -37.88946 -36.18637 -35.27764 -34.18935 -32.97956 -30.55701 -29.06557 -27.81906 -25.85262 -23.80280 -22.59854 -22.39942 -21.37387 -18.96532 -18.73161 -17.85285 -17.82085 -17.21035 -16.98221 -16.26544 -16.12332 -15.72044 -15.31218 -14.81185 -14.64394 -14.30962 -13.94993 -13.80278 -13.68958 -13.54488 -13.45956 -13.27885 -12.71440 -12.52862 -12.36797 -12.05660 -11.89599 -11.75860 -11.51825 -11.44891 -11.29353 -10.73924 -10.44455 -10.41267 -9.97052 -8.26887 -6.32347 0.07320 0.23745 1.16828 1.40800 1.43354 1.53768 1.55493 2.40030 2.76306 3.08718 3.35956 3.66371 3.71734 3.76386 3.90251 4.03145 4.09891 4.13394 4.20982 4.34114 4.51718 4.60665 4.65796 4.70971 4.85218 4.86740 4.92706 4.97417 5.02813 5.16802 5.30874 5.32307 5.54229 5.58588 5.68618 5.73619 6.30746 6.70503 6.76522 7.00419 7.32153 8.90492 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041406 B = 0.003064 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.070653 B = 9134.960944 C = 9774.678793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.038 4.038 3 C -0.168 4.168 4 C 0.090 3.910 5 N -0.517 5.517 6 C 0.106 3.894 7 C -0.158 4.158 8 C 0.114 3.886 9 O -0.354 6.354 10 C 0.471 3.529 11 O -0.539 6.539 12 C -0.106 4.106 13 C -0.085 4.085 14 C -0.011 4.011 15 C -0.539 4.539 16 H 0.023 0.977 17 C -0.002 4.002 18 N -0.957 5.957 19 Si 0.959 3.041 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.235 1.235 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.170 0.830 27 H 0.182 0.818 28 H 0.162 0.838 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 30.564 -0.045 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.046 4.046 3 C -0.187 4.187 4 C -0.066 4.066 5 N -0.226 5.226 6 C -0.050 4.050 7 C -0.161 4.161 8 C 0.040 3.960 9 O -0.271 6.271 10 C 0.316 3.684 11 O -0.428 6.428 12 C -0.143 4.143 13 C -0.123 4.123 14 C -0.048 4.048 15 C -0.576 4.576 16 H 0.041 0.959 17 C -0.198 4.198 18 N -0.597 5.597 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.158 1.158 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.188 0.812 27 H 0.199 0.801 28 H 0.179 0.821 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.898 30.385 -0.047 30.523 hybrid contribution -0.850 -0.825 0.025 1.185 sum 2.048 29.561 -0.022 29.632 Atomic orbital electron populations 1.20980 0.88321 1.04587 1.04103 1.20407 0.98124 0.91705 0.94390 1.22355 0.95294 0.99334 1.01713 1.23365 0.92818 0.96584 0.93805 1.67772 1.42088 0.99209 1.13540 1.22759 0.91500 0.96697 0.94088 1.20525 0.95708 0.94139 1.05685 1.21667 0.89480 0.81237 1.03589 1.86440 1.41141 1.15368 1.84123 1.24260 0.89102 0.84189 0.70875 1.90668 1.19069 1.86333 1.46737 1.21572 0.97338 0.87432 1.07963 1.21156 0.97754 0.92267 1.01153 1.19548 0.95523 0.92098 0.97648 1.21537 0.93610 0.91885 1.50614 0.95865 1.26160 1.04874 0.94861 0.93945 1.70100 1.38442 0.98461 1.52725 0.85538 0.78296 0.78715 0.79354 1.19000 1.21401 1.15800 0.89163 0.91160 0.88605 0.81244 0.80071 0.82106 0.89363 0.89396 0.85336 0.85277 0.93651 0.93645 0.94902 0.95044 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.68 71.24 0.69 -0.49 16 2 C -0.04 -0.56 5.92 -19.67 -0.12 -0.68 16 3 C -0.17 -2.01 9.82 22.36 0.22 -1.79 16 4 C 0.09 1.37 11.18 84.67 0.95 2.31 16 5 N -0.52 -11.18 10.36 -195.84 -2.03 -13.20 16 6 C 0.11 2.29 10.55 84.68 0.89 3.18 16 7 C -0.16 -3.05 5.90 -19.77 -0.12 -3.17 16 8 C 0.11 2.37 4.66 71.24 0.33 2.70 16 9 O -0.35 -8.55 8.72 -51.36 -0.45 -9.00 16 10 C 0.47 13.60 7.96 71.24 0.57 14.17 16 11 O -0.54 -19.25 15.73 21.95 0.35 -18.90 16 12 C -0.11 -2.92 5.81 29.85 0.17 -2.74 16 13 C -0.09 -3.34 4.44 30.60 0.14 -3.20 16 14 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 15 C -0.54 -31.58 9.66 25.60 0.25 -31.33 16 16 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 17 C 0.00 -0.14 5.47 84.66 0.46 0.32 16 18 N -0.96 -61.12 13.96 21.45 0.30 -60.82 16 19 Si 0.96 43.47 27.47 68.60 1.88 45.36 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.24 -9.49 6.54 99.48 0.65 -8.83 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.75 6.79 -2.39 -0.02 0.74 16 25 H 0.10 0.54 8.10 -2.39 -0.02 0.52 16 26 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 27 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.16 3.42 7.00 -2.91 -0.02 3.40 16 29 H 0.09 1.77 7.58 -2.39 -0.02 1.75 16 30 H 0.09 1.76 8.13 -2.38 -0.02 1.74 16 31 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.03 1.39 7.20 -2.39 -0.02 1.38 16 36 H 0.03 1.31 7.57 -2.39 -0.02 1.30 16 37 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -75.13 317.49 5.61 -69.52 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.00 Total: 8.14 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.56 Total: -21.09 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.73 Total: -74.03 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.10 Total: -27.90 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.36 kcal Total: -75.13 5.61 -69.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846921239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.279 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds