Wall clock time and date at job start Mon Mar 30 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48507 * 109.46991 * 239.99833 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37879 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47261 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47322 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47208 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99803 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00046 * 180.27842 * 12 11 10 15 15 C 1.38913 * 120.00330 * 179.72571 * 14 12 11 16 16 N 1.31131 * 125.78034 * 0.02562 * 15 14 12 17 17 C 1.34277 * 109.29651 * 179.97438 * 16 15 14 18 18 C 1.34485 * 108.29552 * 359.97438 * 17 16 15 19 19 N 1.36007 * 125.78640 * 179.70955 * 15 14 12 20 20 C 1.46499 * 126.48233 * 359.97438 * 19 15 14 21 21 C 1.52999 * 117.49979 * 188.61824 * 20 19 15 22 22 C 1.52997 * 60.00006 * 252.50748 * 21 20 19 23 23 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47088 * 59.99367 * 9 7 2 25 25 H 1.09007 * 109.46560 * 299.99873 * 9 7 2 26 26 H 1.09000 * 109.47686 * 59.99611 * 10 9 7 27 27 H 1.08998 * 109.47284 * 299.99675 * 10 9 7 28 28 H 1.09003 * 109.46481 * 59.99978 * 11 10 9 29 29 H 1.08998 * 109.46846 * 300.00152 * 11 10 9 30 30 H 0.97000 * 119.99523 * 359.71839 * 14 12 11 31 31 H 1.07998 * 125.85364 * 179.97438 * 17 16 15 32 32 H 1.07997 * 126.52831 * 180.02562 * 18 17 16 33 33 H 1.09006 * 115.54658 * 334.32406 * 20 19 15 34 34 H 1.09003 * 117.49602 * 359.97438 * 21 20 19 35 35 H 1.09000 * 117.49897 * 145.01880 * 21 20 19 36 36 H 1.09002 * 117.50076 * 252.51177 * 22 21 20 37 37 H 1.09000 * 117.49913 * 107.48432 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 6 2.4598 -6.1325 -0.0024 13 8 3.6522 -5.9108 -0.0027 14 7 2.0107 -7.4032 -0.0086 15 6 2.9134 -8.4590 -0.0147 16 7 4.2202 -8.3504 -0.0147 17 6 4.7673 -9.5766 -0.0210 18 6 3.7733 -10.4825 -0.0245 19 7 2.5917 -9.7804 -0.0156 20 6 1.2411 -10.3481 -0.0099 21 6 1.1108 -11.8592 0.1912 22 6 0.8468 -11.2451 -1.1850 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8881 26 1 2.8715 -3.6047 0.8890 27 1 2.8727 -3.6039 -0.8909 28 1 0.8542 -5.0446 -0.8923 29 1 0.8534 -5.0450 0.8877 30 1 1.0570 -7.5804 -0.0086 31 1 5.8245 -9.7976 -0.0229 32 1 3.8827 -11.5569 -0.0294 33 1 0.4665 -9.7140 0.4214 34 1 2.0300 -12.4311 0.3188 35 1 0.2504 -12.2196 0.7550 36 1 -0.1874 -11.2013 -1.5266 37 1 1.5922 -11.4127 -1.9624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847079986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:21 Heat of formation + Delta-G solvation = 32.307598 kcal Electronic energy + Delta-G solvation = -18810.858992 eV Core-core repulsion = 15782.471983 eV Total energy + Delta-G solvation = -3028.387009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.13984 -40.69542 -38.18631 -36.23043 -35.80786 -34.02162 -32.79875 -30.42760 -29.09285 -26.04129 -24.42626 -23.64806 -23.30527 -22.00106 -21.23321 -20.75140 -19.22785 -18.51245 -17.71045 -17.13646 -16.85891 -16.47713 -16.34825 -15.83466 -15.22000 -14.88205 -14.75829 -14.58688 -14.25913 -13.78051 -13.66934 -13.14653 -12.63919 -12.52480 -12.51116 -12.43856 -12.39743 -11.73715 -11.69841 -11.53369 -11.47315 -11.29442 -11.07511 -10.57742 -10.52562 -10.30541 -8.87715 -8.19397 -6.28700 0.81173 1.15537 1.40241 1.42880 1.51013 1.64590 2.17264 2.31363 2.42698 2.73561 3.13745 3.49268 3.54971 3.77020 3.86990 3.90682 4.15312 4.26228 4.35994 4.50828 4.70934 4.72959 4.76752 4.88826 4.96055 4.96608 5.08951 5.11812 5.20205 5.28189 5.55459 5.73070 5.77308 5.88111 6.11259 6.25580 6.30257 6.86273 7.04696 7.33949 7.39664 8.91855 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.042064 B = 0.003165 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.492683 B = 8845.581606 C = 9417.178622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.049 0.951 9 C 0.028 3.972 10 C -0.085 4.085 11 C -0.117 4.117 12 C 0.515 3.485 13 O -0.526 6.526 14 N -0.629 5.629 15 C 0.414 3.586 16 N -0.531 5.531 17 C -0.049 4.049 18 C -0.043 4.043 19 N -0.439 5.439 20 C 0.019 3.981 21 C -0.151 4.151 22 C -0.170 4.170 23 H 0.265 0.735 24 H 0.005 0.995 25 H 0.005 0.995 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.432 0.568 31 H 0.185 0.815 32 H 0.215 0.785 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 -28.530 -0.305 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.123 4.123 11 C -0.157 4.157 12 C 0.302 3.698 13 O -0.397 6.397 14 N -0.284 5.284 15 C 0.063 3.937 16 N -0.256 5.256 17 C -0.195 4.195 18 C -0.174 4.174 19 N -0.127 5.127 20 C -0.084 4.084 21 C -0.188 4.188 22 C -0.208 4.208 23 H 0.074 0.926 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.272 0.728 31 H 0.202 0.798 32 H 0.232 0.768 33 H 0.172 0.828 34 H 0.128 0.872 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.713 -27.503 -0.296 27.558 hybrid contribution -0.284 0.321 -0.021 0.429 sum -1.997 -27.182 -0.317 27.257 Atomic orbital electron populations 1.70042 1.07375 1.27845 1.51543 1.25859 0.95823 1.02900 0.94704 0.85597 0.78442 0.78603 0.78997 1.19553 1.20240 1.19557 1.21678 0.93334 0.92953 1.50812 0.93245 1.18999 0.94101 0.91978 0.95849 1.21200 0.97792 0.92907 1.00415 1.21675 0.97243 0.90088 1.06709 1.21491 0.90273 0.83199 0.74831 1.90802 1.18850 1.83938 1.46071 1.42532 1.09175 1.02483 1.74191 1.19706 0.88174 0.80204 1.05583 1.70763 1.03977 1.26902 1.23959 1.22669 1.01036 0.87331 1.08470 1.22926 0.82964 0.99892 1.11605 1.45051 1.07397 1.03672 1.56609 1.22454 0.82219 0.95502 1.08236 1.23521 1.05546 0.90561 0.99174 1.23561 1.04490 1.00803 0.91969 0.92629 0.97682 0.97672 0.94112 0.94135 0.86308 0.86268 0.72754 0.79808 0.76798 0.82759 0.87223 0.84924 0.85279 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.96 45.61 29.54 68.60 2.03 47.63 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.55 -32.59 9.11 25.60 0.23 -32.36 16 8 H 0.05 2.92 7.74 -2.92 -0.02 2.89 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.08 -3.76 4.44 30.59 0.14 -3.62 16 11 C -0.12 -3.71 5.70 29.85 0.17 -3.54 16 12 C 0.51 17.59 7.79 87.66 0.68 18.27 16 13 O -0.53 -23.83 14.66 -3.04 -0.04 -23.88 16 14 N -0.63 -16.20 5.40 -311.96 -1.68 -17.88 16 15 C 0.41 12.02 8.43 260.20 2.19 14.22 16 16 N -0.53 -19.05 9.43 -197.67 -1.86 -20.92 16 17 C -0.05 -1.28 11.85 83.46 0.99 -0.29 16 18 C -0.04 -0.79 10.88 82.95 0.90 0.11 16 19 N -0.44 -8.62 3.13 -502.97 -1.57 -10.19 16 20 C 0.02 0.20 6.63 44.99 0.30 0.49 16 21 C -0.15 -0.75 9.99 30.59 0.31 -0.45 16 22 C -0.17 -1.16 10.41 30.59 0.32 -0.84 16 23 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 26 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.43 6.80 8.09 -92.71 -0.75 6.05 16 31 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.22 1.97 7.14 -2.91 -0.02 1.95 16 33 H 0.16 1.05 7.69 -2.38 -0.02 1.04 16 34 H 0.11 0.48 6.91 -2.39 -0.02 0.46 16 35 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.13 0.43 8.14 -2.39 -0.02 0.42 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -84.15 319.54 4.31 -79.84 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.32 Total: 6.95 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 6.84 Total: -5.62 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -4.83 Total: -104.92 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.04 Total: -23.88 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -84.15 4.31 -79.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847079986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.149 kcal (2) G-P(sol) polarization free energy of solvation -84.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds