Wall clock time and date at job start Mon Mar 30 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47338 * 2 1 4 4 O 1.45198 * 109.47083 * 239.99419 * 2 1 3 5 5 C 1.34221 * 116.99903 * 90.00229 * 4 2 1 6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00275 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99908 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99794 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99992 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47123 * 90.00328 * 14 12 10 16 16 H 1.48506 * 109.46940 * 210.00450 * 14 12 10 17 17 H 1.48509 * 109.47046 * 330.00079 * 14 12 10 18 18 C 1.50701 * 109.46741 * 119.99414 * 2 1 3 19 19 C 1.38653 * 120.79025 * 84.72191 * 18 2 1 20 20 C 1.38206 * 119.16491 * 179.75375 * 19 18 2 21 21 N 1.31872 * 120.75857 * 0.52893 * 20 19 18 22 22 C 1.31867 * 121.72957 * 359.74013 * 21 20 19 23 23 C 1.38201 * 120.76467 * 359.97438 * 22 21 20 24 24 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46662 * 300.00373 * 1 2 3 26 26 H 1.08996 * 109.46761 * 60.00207 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99668 * 7 5 4 28 28 H 1.09000 * 109.47318 * 59.99266 * 7 5 4 29 29 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 30 30 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 31 31 H 1.08992 * 109.47554 * 299.99696 * 9 8 7 32 32 H 1.08996 * 109.47261 * 60.00229 * 9 8 7 33 33 H 0.96996 * 119.99562 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.42027 * 359.97438 * 19 18 2 35 35 H 1.07999 * 119.61972 * 180.29065 * 20 19 18 36 36 H 1.08004 * 119.61818 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.42101 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0638 -2.2810 6 8 1.9975 1.2515 -2.2507 7 6 2.7183 -0.5776 -3.5494 8 6 2.8637 0.4886 -4.6370 9 6 3.3730 -0.1625 -5.9245 10 6 3.5156 0.8876 -6.9960 11 1 3.2681 1.9165 -6.7802 12 6 3.9620 0.5348 -8.2520 13 7 4.0869 1.4513 -9.1869 14 14 4.3907 -1.2446 -8.6251 15 1 3.1842 -1.9496 -9.1277 16 1 5.4572 -1.2908 -9.6575 17 1 4.8718 -1.9081 -7.3866 18 6 2.0323 -0.7103 1.2306 19 6 2.1655 -2.0903 1.2488 20 6 2.6342 -2.7066 2.3937 21 7 2.9429 -1.9987 3.4626 22 6 2.8236 -0.6856 3.4829 23 6 2.3669 0.0001 2.3733 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.6872 -1.0412 -3.3639 28 1 2.0088 -1.3373 -3.8773 29 1 1.8950 0.9526 -4.8227 30 1 3.5734 1.2480 -4.3089 31 1 4.3417 -0.6262 -5.7386 32 1 2.6636 -0.9220 -6.2528 33 1 4.4006 1.2030 -10.0705 34 1 1.9097 -2.6760 0.3782 35 1 2.7453 -3.7807 2.4144 36 1 3.0866 -0.1395 4.3769 37 1 2.2718 1.0756 2.3959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848864672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:48 Heat of formation + Delta-G solvation = -70.525705 kcal Electronic energy + Delta-G solvation = -18736.750420 eV Core-core repulsion = 15671.611473 eV Total energy + Delta-G solvation = -3065.138947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90331 -40.09008 -36.99084 -34.47809 -34.06091 -32.17379 -31.53175 -30.46698 -28.67319 -25.23029 -24.16299 -23.73943 -21.90377 -20.69199 -19.93113 -17.73002 -17.58200 -16.69700 -16.32624 -16.27330 -15.98302 -15.47358 -14.61570 -14.31153 -14.08757 -13.99430 -13.77210 -13.43018 -13.01166 -12.73630 -12.37330 -12.13693 -12.04230 -11.78469 -11.43605 -11.07981 -10.97709 -10.84613 -10.41975 -10.03534 -9.95778 -9.80956 -9.77538 -9.69410 -9.47735 -9.21331 -8.55318 -6.05037 -4.03632 0.79231 0.84476 2.33538 2.60709 3.29268 3.36889 3.39231 3.48236 4.07799 4.15585 4.43524 4.46725 4.60889 4.80493 4.81737 4.82822 4.93222 5.26055 5.28029 5.31856 5.40095 5.43812 5.44748 5.49817 5.61833 5.78365 5.85948 6.00644 6.34914 6.41761 6.43036 6.55451 6.80993 7.26592 7.36133 7.63457 7.76442 7.85890 8.53200 9.00746 9.56517 11.08497 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.003230 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.173107 B = 8666.532488 C = 9050.963795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 H 0.098 0.902 4 O -0.354 6.354 5 C 0.462 3.538 6 O -0.502 6.502 7 C -0.114 4.114 8 C -0.092 4.092 9 C -0.014 4.014 10 C -0.521 4.521 11 H 0.073 0.927 12 C 0.065 3.935 13 N -0.903 5.903 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.043 4.043 19 C -0.146 4.146 20 C 0.097 3.903 21 N -0.486 5.486 22 C 0.098 3.902 23 C -0.162 4.162 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -7.569 23.786 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 H 0.116 0.884 4 O -0.272 6.272 5 C 0.305 3.695 6 O -0.389 6.389 7 C -0.152 4.152 8 C -0.130 4.130 9 C -0.051 4.051 10 C -0.559 4.559 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.542 5.542 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.051 4.051 19 C -0.166 4.166 20 C -0.060 4.060 21 N -0.195 5.195 22 C -0.059 4.059 23 C -0.182 4.182 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.302 -7.597 24.381 26.082 hybrid contribution -0.105 -0.288 -1.074 1.116 sum -5.407 -7.884 23.308 25.192 Atomic orbital electron populations 1.22166 0.92780 1.03468 1.03612 1.21367 0.94838 0.96494 0.80530 0.88394 1.86592 1.77462 1.42852 1.20339 1.24356 0.73879 0.86226 0.85039 1.90656 1.47586 1.16775 1.83868 1.21725 1.03063 1.01367 0.89008 1.21400 1.02367 0.95951 0.93281 1.19594 0.95868 0.96801 0.92829 1.21122 1.44439 0.95776 0.94604 0.90911 1.25049 0.95015 0.97325 0.96189 1.69919 1.47242 1.33328 1.03715 0.86763 0.78430 0.85668 0.78310 1.20278 1.21387 1.18967 1.20093 0.96397 0.94384 0.94227 1.22082 0.99811 0.94657 1.00057 1.22830 0.94378 1.00480 0.88278 1.67677 1.14888 1.08201 1.28706 1.22738 0.95191 0.90215 0.97726 1.21996 1.00766 1.01594 0.93868 0.91268 0.90605 0.90906 0.88057 0.88002 0.91792 0.91798 0.96406 0.96832 0.92710 0.83981 0.82465 0.82476 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.53 37.16 0.35 -1.15 16 2 C 0.12 1.33 2.81 -27.88 -0.08 1.25 16 3 H 0.10 1.13 7.09 -51.93 -0.37 0.77 16 4 O -0.35 -4.52 9.13 -39.23 -0.36 -4.88 16 5 C 0.46 6.95 7.93 36.01 0.29 7.24 16 6 O -0.50 -8.95 15.20 -18.75 -0.29 -9.23 16 7 C -0.11 -1.71 5.81 -27.88 -0.16 -1.87 16 8 C -0.09 -1.82 4.44 -26.73 -0.12 -1.93 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 11 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 12 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 14 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 18 C -0.04 -0.42 5.04 -104.32 -0.53 -0.94 16 19 C -0.15 -1.36 9.44 -39.44 -0.37 -1.73 16 20 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 21 N -0.49 -4.98 10.36 -13.25 -0.14 -5.12 16 22 C 0.10 0.84 11.18 -17.55 -0.20 0.65 16 23 C -0.16 -1.38 9.80 -39.44 -0.39 -1.77 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 30 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 32 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.14 1.18 7.72 -52.48 -0.41 0.78 16 35 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -33.23 320.17 -7.14 -40.37 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.35 Total: -2.09 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.94 Total: -13.43 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.64 Total: -32.31 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.64 Total: -14.11 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.23 -7.14 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.159 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds