Wall clock time and date at job start Mon Mar 30 2020 06:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47338 * 2 1 4 4 O 1.45198 * 109.47083 * 239.99419 * 2 1 3 5 5 C 1.34221 * 116.99903 * 90.00229 * 4 2 1 6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00275 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99908 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99794 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99992 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47123 * 90.00328 * 14 12 10 16 16 H 1.48506 * 109.46940 * 210.00450 * 14 12 10 17 17 H 1.48509 * 109.47046 * 330.00079 * 14 12 10 18 18 C 1.50701 * 109.46741 * 119.99414 * 2 1 3 19 19 C 1.38653 * 120.79025 * 84.72191 * 18 2 1 20 20 C 1.38206 * 119.16491 * 179.75375 * 19 18 2 21 21 N 1.31872 * 120.75857 * 0.52893 * 20 19 18 22 22 C 1.31867 * 121.72957 * 359.74013 * 21 20 19 23 23 C 1.38201 * 120.76467 * 359.97438 * 22 21 20 24 24 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46662 * 300.00373 * 1 2 3 26 26 H 1.08996 * 109.46761 * 60.00207 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99668 * 7 5 4 28 28 H 1.09000 * 109.47318 * 59.99266 * 7 5 4 29 29 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 30 30 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 31 31 H 1.08992 * 109.47554 * 299.99696 * 9 8 7 32 32 H 1.08996 * 109.47261 * 60.00229 * 9 8 7 33 33 H 0.96996 * 119.99562 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.42027 * 359.97438 * 19 18 2 35 35 H 1.07999 * 119.61972 * 180.29065 * 20 19 18 36 36 H 1.08004 * 119.61818 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.42101 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0638 -2.2810 6 8 1.9975 1.2515 -2.2507 7 6 2.7183 -0.5776 -3.5494 8 6 2.8637 0.4886 -4.6370 9 6 3.3730 -0.1625 -5.9245 10 6 3.5156 0.8876 -6.9960 11 1 3.2681 1.9165 -6.7802 12 6 3.9620 0.5348 -8.2520 13 7 4.0869 1.4513 -9.1869 14 14 4.3907 -1.2446 -8.6251 15 1 3.1842 -1.9496 -9.1277 16 1 5.4572 -1.2908 -9.6575 17 1 4.8718 -1.9081 -7.3866 18 6 2.0323 -0.7103 1.2306 19 6 2.1655 -2.0903 1.2488 20 6 2.6342 -2.7066 2.3937 21 7 2.9429 -1.9987 3.4626 22 6 2.8236 -0.6856 3.4829 23 6 2.3669 0.0001 2.3733 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.6872 -1.0412 -3.3639 28 1 2.0088 -1.3373 -3.8773 29 1 1.8950 0.9526 -4.8227 30 1 3.5734 1.2480 -4.3089 31 1 4.3417 -0.6262 -5.7386 32 1 2.6636 -0.9220 -6.2528 33 1 4.4006 1.2030 -10.0705 34 1 1.9097 -2.6760 0.3782 35 1 2.7453 -3.7807 2.4144 36 1 3.0866 -0.1395 4.3769 37 1 2.2718 1.0756 2.3959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848864672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:47 Heat of formation + Delta-G solvation = -90.315182 kcal Electronic energy + Delta-G solvation = -18737.608556 eV Core-core repulsion = 15671.611473 eV Total energy + Delta-G solvation = -3065.997083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86689 -40.93860 -38.08848 -36.19762 -34.91260 -34.15777 -32.16938 -31.29222 -30.32270 -26.43909 -25.38574 -24.48941 -23.02600 -21.97556 -21.32549 -19.00918 -18.77055 -18.29149 -17.46747 -17.07625 -16.72832 -16.42553 -16.09469 -15.80027 -15.14841 -14.80164 -14.62395 -14.61139 -14.38106 -14.08778 -13.83797 -13.29027 -13.18786 -12.77162 -12.70995 -12.54577 -12.23554 -12.00669 -11.86800 -11.76679 -11.53167 -11.44218 -11.30365 -10.74578 -10.68402 -10.46531 -10.11417 -8.27479 -6.33156 0.11424 0.18009 1.16464 1.40134 1.43042 1.54869 1.58132 2.39540 2.81576 3.08069 3.29501 3.58897 3.66377 3.78187 3.94658 4.06622 4.11991 4.17195 4.18455 4.21787 4.52571 4.61802 4.68465 4.72073 4.84995 4.87987 4.91431 4.93051 5.01461 5.06004 5.21699 5.41360 5.53429 5.57291 5.67872 5.72127 6.29989 6.71317 6.75767 6.98677 7.31398 8.89982 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036873 B = 0.003230 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.173107 B = 8666.532488 C = 9050.963795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.087 0.913 4 O -0.347 6.347 5 C 0.468 3.532 6 O -0.538 6.538 7 C -0.106 4.106 8 C -0.085 4.085 9 C -0.010 4.010 10 C -0.539 4.539 11 H 0.022 0.978 12 C -0.002 4.002 13 N -0.957 5.957 14 Si 0.959 3.041 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.235 1.235 18 C -0.055 4.055 19 C -0.152 4.152 20 C 0.091 3.909 21 N -0.509 5.509 22 C 0.093 3.907 23 C -0.164 4.164 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.266 0.734 34 H 0.150 0.850 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -10.482 25.344 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.066 3.934 3 H 0.105 0.895 4 O -0.264 6.264 5 C 0.313 3.687 6 O -0.428 6.428 7 C -0.143 4.143 8 C -0.123 4.123 9 C -0.047 4.047 10 C -0.577 4.577 11 H 0.041 0.959 12 C -0.199 4.199 13 N -0.597 5.597 14 Si 0.781 3.219 15 H -0.189 1.189 16 H -0.214 1.214 17 H -0.158 1.158 18 C -0.064 4.064 19 C -0.172 4.172 20 C -0.065 4.065 21 N -0.219 5.219 22 C -0.064 4.064 23 C -0.183 4.183 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.168 0.832 35 H 0.197 0.803 36 H 0.199 0.801 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.238 -10.524 25.979 28.514 hybrid contribution -0.157 0.742 -1.492 1.674 sum -5.394 -9.783 24.486 26.914 Atomic orbital electron populations 1.22153 0.91594 1.04092 1.03768 1.21531 0.95823 0.95979 0.80104 0.89456 1.86556 1.77105 1.42410 1.20332 1.24289 0.73115 0.85647 0.85642 1.90656 1.49273 1.18317 1.84516 1.21564 1.05342 0.99951 0.87401 1.21154 1.00584 0.96808 0.93763 1.19539 0.97144 0.95623 0.92441 1.21536 1.44235 0.95197 0.96758 0.95932 1.26172 0.94731 1.03203 0.95745 1.70100 1.48768 1.36424 1.04456 0.85532 0.78515 0.78653 0.79158 1.18897 1.21403 1.15802 1.20115 0.97355 0.94823 0.94073 1.22209 0.99875 0.94531 1.00536 1.23198 0.93853 1.01571 0.87869 1.67719 1.15643 1.09078 1.29414 1.23173 0.94587 0.89985 0.98611 1.22218 1.00127 1.02574 0.93406 0.90370 0.88810 0.92384 0.85571 0.85162 0.93624 0.93833 0.94965 0.94957 0.92513 0.83193 0.80349 0.80098 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.53 71.98 0.69 -2.02 16 2 C 0.12 2.45 2.81 29.85 0.08 2.53 16 3 H 0.09 1.98 7.09 -2.39 -0.02 1.96 16 4 O -0.35 -8.19 9.13 -51.33 -0.47 -8.66 16 5 C 0.47 13.48 7.93 71.24 0.56 14.04 16 6 O -0.54 -19.23 15.20 21.96 0.33 -18.90 16 7 C -0.11 -2.88 5.81 29.85 0.17 -2.71 16 8 C -0.09 -3.32 4.44 30.59 0.14 -3.18 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.54 -31.53 9.66 25.60 0.25 -31.28 16 11 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 12 C 0.00 -0.14 5.47 84.66 0.46 0.32 16 13 N -0.96 -60.97 13.96 21.45 0.30 -60.67 16 14 Si 0.96 43.12 27.47 68.60 1.88 45.01 16 15 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 17 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 18 C -0.06 -0.99 5.04 -19.67 -0.10 -1.09 16 19 C -0.15 -2.51 9.44 22.36 0.21 -2.30 16 20 C 0.09 1.47 11.18 84.68 0.95 2.41 16 21 N -0.51 -9.51 10.36 -195.84 -2.03 -11.54 16 22 C 0.09 1.41 11.18 84.68 0.95 2.36 16 23 C -0.16 -2.48 9.80 22.36 0.22 -2.26 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.04 1.90 8.10 -2.39 -0.02 1.89 16 30 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 31 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 32 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.15 2.15 7.72 -2.91 -0.02 2.13 16 35 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -74.17 320.17 5.71 -68.46 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.99 Total: 9.80 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.70 Total: -23.50 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.73 Total: -72.21 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.13 Total: -27.56 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.01 kcal Total: -74.17 5.71 -68.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.857 kcal (2) G-P(sol) polarization free energy of solvation -74.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds