Wall clock time and date at job start Mon Mar 30 2020 06:51:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08996 * 109.47338 * 2 1
4 4 O 1.45198 * 109.47083 * 239.99419 * 2 1 3
5 5 C 1.34221 * 116.99903 * 90.00229 * 4 2 1
6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2
7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2
8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4
9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 5
10 10 C 1.50703 * 109.46946 * 179.97438 * 9 8 7
11 11 H 1.07998 * 120.00275 * 0.02562 * 10 9 8
12 12 C 1.37885 * 119.99908 * 180.02562 * 10 9 8
13 13 N 1.31516 * 119.99794 * 180.02562 * 12 10 9
14 14 Si 1.86799 * 119.99992 * 359.97438 * 12 10 9
15 15 H 1.48498 * 109.47123 * 90.00328 * 14 12 10
16 16 H 1.48506 * 109.46940 * 210.00450 * 14 12 10
17 17 H 1.48509 * 109.47046 * 330.00079 * 14 12 10
18 18 C 1.50701 * 109.46741 * 119.99414 * 2 1 3
19 19 C 1.38653 * 120.79025 * 84.72191 * 18 2 1
20 20 C 1.38206 * 119.16491 * 179.75375 * 19 18 2
21 21 N 1.31872 * 120.75857 * 0.52893 * 20 19 18
22 22 C 1.31867 * 121.72957 * 359.74013 * 21 20 19
23 23 C 1.38201 * 120.76467 * 359.97438 * 22 21 20
24 24 H 1.08993 * 109.47124 * 180.02562 * 1 2 3
25 25 H 1.09006 * 109.46662 * 300.00373 * 1 2 3
26 26 H 1.08996 * 109.46761 * 60.00207 * 1 2 3
27 27 H 1.09001 * 109.46953 * 299.99668 * 7 5 4
28 28 H 1.09000 * 109.47318 * 59.99266 * 7 5 4
29 29 H 1.09001 * 109.46832 * 299.99686 * 8 7 5
30 30 H 1.09004 * 109.47261 * 59.99705 * 8 7 5
31 31 H 1.08992 * 109.47554 * 299.99696 * 9 8 7
32 32 H 1.08996 * 109.47261 * 60.00229 * 9 8 7
33 33 H 0.96996 * 119.99562 * 180.02562 * 13 12 10
34 34 H 1.08003 * 120.42027 * 359.97438 * 19 18 2
35 35 H 1.07999 * 119.61972 * 180.29065 * 20 19 18
36 36 H 1.08004 * 119.61818 * 180.02562 * 22 21 20
37 37 H 1.07998 * 120.42101 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0140 -0.6846 -1.1855
5 6 2.2172 0.0638 -2.2810
6 8 1.9975 1.2515 -2.2507
7 6 2.7183 -0.5776 -3.5494
8 6 2.8637 0.4886 -4.6370
9 6 3.3730 -0.1625 -5.9245
10 6 3.5156 0.8876 -6.9960
11 1 3.2681 1.9165 -6.7802
12 6 3.9620 0.5348 -8.2520
13 7 4.0869 1.4513 -9.1869
14 14 4.3907 -1.2446 -8.6251
15 1 3.1842 -1.9496 -9.1277
16 1 5.4572 -1.2908 -9.6575
17 1 4.8718 -1.9081 -7.3866
18 6 2.0323 -0.7103 1.2306
19 6 2.1655 -2.0903 1.2488
20 6 2.6342 -2.7066 2.3937
21 7 2.9429 -1.9987 3.4626
22 6 2.8236 -0.6856 3.4829
23 6 2.3669 0.0001 2.3733
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 3.6872 -1.0412 -3.3639
28 1 2.0088 -1.3373 -3.8773
29 1 1.8950 0.9526 -4.8227
30 1 3.5734 1.2480 -4.3089
31 1 4.3417 -0.6262 -5.7386
32 1 2.6636 -0.9220 -6.2528
33 1 4.4006 1.2030 -10.0705
34 1 1.9097 -2.6760 0.3782
35 1 2.7453 -3.7807 2.4144
36 1 3.0866 -0.1395 4.3769
37 1 2.2718 1.0756 2.3959
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000848864672.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:51:47
Heat of formation + Delta-G solvation = -90.315182 kcal
Electronic energy + Delta-G solvation = -18737.608556 eV
Core-core repulsion = 15671.611473 eV
Total energy + Delta-G solvation = -3065.997083 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.86689 -40.93860 -38.08848 -36.19762 -34.91260 -34.15777 -32.16938 -31.29222
-30.32270 -26.43909 -25.38574 -24.48941 -23.02600 -21.97556 -21.32549 -19.00918
-18.77055 -18.29149 -17.46747 -17.07625 -16.72832 -16.42553 -16.09469 -15.80027
-15.14841 -14.80164 -14.62395 -14.61139 -14.38106 -14.08778 -13.83797 -13.29027
-13.18786 -12.77162 -12.70995 -12.54577 -12.23554 -12.00669 -11.86800 -11.76679
-11.53167 -11.44218 -11.30365 -10.74578 -10.68402 -10.46531 -10.11417 -8.27479
-6.33156 0.11424 0.18009 1.16464 1.40134 1.43042 1.54869 1.58132
2.39540 2.81576 3.08069 3.29501 3.58897 3.66377 3.78187 3.94658
4.06622 4.11991 4.17195 4.18455 4.21787 4.52571 4.61802 4.68465
4.72073 4.84995 4.87987 4.91431 4.93051 5.01461 5.06004 5.21699
5.41360 5.53429 5.57291 5.67872 5.72127 6.29989 6.71317 6.75767
6.98677 7.31398 8.89982
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.036873 B = 0.003230 C = 0.003093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 759.173107 B = 8666.532488 C = 9050.963795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.120 3.880
3 H 0.087 0.913
4 O -0.347 6.347
5 C 0.468 3.532
6 O -0.538 6.538
7 C -0.106 4.106
8 C -0.085 4.085
9 C -0.010 4.010
10 C -0.539 4.539
11 H 0.022 0.978
12 C -0.002 4.002
13 N -0.957 5.957
14 Si 0.959 3.041
15 H -0.264 1.264
16 H -0.288 1.288
17 H -0.235 1.235
18 C -0.055 4.055
19 C -0.152 4.152
20 C 0.091 3.909
21 N -0.509 5.509
22 C 0.093 3.907
23 C -0.164 4.164
24 H 0.077 0.923
25 H 0.093 0.907
26 H 0.057 0.943
27 H 0.126 0.874
28 H 0.130 0.870
29 H 0.045 0.955
30 H 0.043 0.957
31 H 0.032 0.968
32 H 0.032 0.968
33 H 0.266 0.734
34 H 0.150 0.850
35 H 0.180 0.820
36 H 0.182 0.818
37 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.507 -10.482 25.344 27.974
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.066 3.934
3 H 0.105 0.895
4 O -0.264 6.264
5 C 0.313 3.687
6 O -0.428 6.428
7 C -0.143 4.143
8 C -0.123 4.123
9 C -0.047 4.047
10 C -0.577 4.577
11 H 0.041 0.959
12 C -0.199 4.199
13 N -0.597 5.597
14 Si 0.781 3.219
15 H -0.189 1.189
16 H -0.214 1.214
17 H -0.158 1.158
18 C -0.064 4.064
19 C -0.172 4.172
20 C -0.065 4.065
21 N -0.219 5.219
22 C -0.064 4.064
23 C -0.183 4.183
24 H 0.096 0.904
25 H 0.112 0.888
26 H 0.076 0.924
27 H 0.144 0.856
28 H 0.148 0.852
29 H 0.064 0.936
30 H 0.062 0.938
31 H 0.050 0.950
32 H 0.050 0.950
33 H 0.075 0.925
34 H 0.168 0.832
35 H 0.197 0.803
36 H 0.199 0.801
37 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -5.238 -10.524 25.979 28.514
hybrid contribution -0.157 0.742 -1.492 1.674
sum -5.394 -9.783 24.486 26.914
Atomic orbital electron populations
1.22153 0.91594 1.04092 1.03768 1.21531 0.95823 0.95979 0.80104
0.89456 1.86556 1.77105 1.42410 1.20332 1.24289 0.73115 0.85647
0.85642 1.90656 1.49273 1.18317 1.84516 1.21564 1.05342 0.99951
0.87401 1.21154 1.00584 0.96808 0.93763 1.19539 0.97144 0.95623
0.92441 1.21536 1.44235 0.95197 0.96758 0.95932 1.26172 0.94731
1.03203 0.95745 1.70100 1.48768 1.36424 1.04456 0.85532 0.78515
0.78653 0.79158 1.18897 1.21403 1.15802 1.20115 0.97355 0.94823
0.94073 1.22209 0.99875 0.94531 1.00536 1.23198 0.93853 1.01571
0.87869 1.67719 1.15643 1.09078 1.29414 1.23173 0.94587 0.89985
0.98611 1.22218 1.00127 1.02574 0.93406 0.90370 0.88810 0.92384
0.85571 0.85162 0.93624 0.93833 0.94965 0.94957 0.92513 0.83193
0.80349 0.80098 0.82736
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.70 9.53 71.98 0.69 -2.02 16
2 C 0.12 2.45 2.81 29.85 0.08 2.53 16
3 H 0.09 1.98 7.09 -2.39 -0.02 1.96 16
4 O -0.35 -8.19 9.13 -51.33 -0.47 -8.66 16
5 C 0.47 13.48 7.93 71.24 0.56 14.04 16
6 O -0.54 -19.23 15.20 21.96 0.33 -18.90 16
7 C -0.11 -2.88 5.81 29.85 0.17 -2.71 16
8 C -0.09 -3.32 4.44 30.59 0.14 -3.18 16
9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16
10 C -0.54 -31.53 9.66 25.60 0.25 -31.28 16
11 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16
12 C 0.00 -0.14 5.47 84.66 0.46 0.32 16
13 N -0.96 -60.97 13.96 21.45 0.30 -60.67 16
14 Si 0.96 43.12 27.47 68.60 1.88 45.01 16
15 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16
16 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16
17 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16
18 C -0.06 -0.99 5.04 -19.67 -0.10 -1.09 16
19 C -0.15 -2.51 9.44 22.36 0.21 -2.30 16
20 C 0.09 1.47 11.18 84.68 0.95 2.41 16
21 N -0.51 -9.51 10.36 -195.84 -2.03 -11.54 16
22 C 0.09 1.41 11.18 84.68 0.95 2.36 16
23 C -0.16 -2.48 9.80 22.36 0.22 -2.26 16
24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
25 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16
26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
27 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16
28 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16
29 H 0.04 1.90 8.10 -2.39 -0.02 1.89 16
30 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16
31 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16
32 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16
33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16
34 H 0.15 2.15 7.72 -2.91 -0.02 2.13 16
35 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16
36 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16
37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16
Total: -1.00 -74.17 320.17 5.71 -68.46
By element:
Atomic # 1 Polarization: 8.81 SS G_CDS: 0.99 Total: 9.80 kcal
Atomic # 6 Polarization: -28.21 SS G_CDS: 4.70 Total: -23.50 kcal
Atomic # 7 Polarization: -70.48 SS G_CDS: -1.73 Total: -72.21 kcal
Atomic # 8 Polarization: -27.42 SS G_CDS: -0.13 Total: -27.56 kcal
Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.01 kcal
Total: -74.17 5.71 -68.46 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000848864672.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.857 kcal
(2) G-P(sol) polarization free energy of solvation -74.168 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.315 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds