Wall clock time and date at job start Mon Mar 30 2020 06:39:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1
5 5 O 1.45203 * 109.47162 * 295.00626 * 3 2 1
6 6 C 1.34228 * 117.00100 * 89.99663 * 5 3 2
7 7 O 1.20817 * 119.99998 * 359.97438 * 6 5 3
8 8 C 1.50703 * 119.99508 * 179.97438 * 6 5 3
9 9 H 1.08996 * 109.47381 * 299.99866 * 8 6 5
10 10 C 1.52998 * 109.46940 * 60.00230 * 8 6 5
11 11 C 1.50702 * 109.46995 * 179.97438 * 8 6 5
12 12 H 1.08003 * 119.99605 * 0.02562 * 11 8 6
13 13 C 1.37873 * 120.00327 * 180.02562 * 11 8 6
14 14 N 1.31507 * 120.00301 * 180.02562 * 13 11 8
15 15 Si 1.86795 * 119.99724 * 359.97438 * 13 11 8
16 16 H 1.48503 * 109.47434 * 90.00656 * 15 13 11
17 17 H 1.48504 * 109.47302 * 210.00095 * 15 13 11
18 18 H 1.48496 * 109.47483 * 330.00418 * 15 13 11
19 19 C 1.50700 * 109.47526 * 174.99949 * 3 2 1
20 20 C 1.38653 * 120.78730 * 84.72254 * 19 3 2
21 21 C 1.38206 * 119.15776 * 179.75648 * 20 19 3
22 22 N 1.31868 * 120.76563 * 0.53342 * 21 20 19
23 23 C 1.31869 * 121.72726 * 359.73806 * 22 21 20
24 24 C 1.38205 * 120.76146 * 359.97438 * 23 22 21
25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3
29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
30 30 H 1.08998 * 109.47473 * 60.00171 * 10 8 6
31 31 H 1.09007 * 109.46814 * 179.97438 * 10 8 6
32 32 H 1.09004 * 109.47075 * 299.99139 * 10 8 6
33 33 H 0.97007 * 120.00661 * 179.97438 * 14 13 11
34 34 H 1.07995 * 120.41795 * 0.02562 * 20 19 3
35 35 H 1.08004 * 119.60999 * 180.24558 * 21 20 19
36 36 H 1.07994 * 119.61503 * 180.02562 * 23 22 21
37 37 H 1.08001 * 120.41633 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8419
5 8 1.6558 2.0917 -1.2407
6 6 0.4726 2.7255 -1.2558
7 8 -0.2192 2.7369 -0.2654
8 6 0.0074 3.4227 -2.5083
9 1 0.7244 4.1970 -2.7808
10 6 -0.1030 2.4064 -3.6466
11 6 -1.3408 4.0497 -2.2628
12 1 -1.8133 3.9533 -1.2964
13 6 -1.9712 4.7463 -3.2719
14 7 -3.1475 5.2939 -3.0576
15 14 -1.1537 4.9136 -4.9431
16 1 -1.5620 3.7789 -5.8098
17 1 -1.5710 6.1922 -5.5726
18 1 0.3218 4.9026 -4.7758
19 6 3.5419 1.4443 0.1238
20 6 4.3466 1.3012 -0.9962
21 6 5.7202 1.3128 -0.8444
22 7 6.2659 1.4471 0.3485
23 6 5.5319 1.5800 1.4359
24 6 4.1519 1.5835 1.3611
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 -0.8900
28 1 1.8934 -0.5138 0.8899
29 1 1.8933 -0.5138 -0.8900
30 1 -0.8201 1.6320 -3.3741
31 1 -0.4400 2.9106 -4.5524
32 1 0.8720 1.9525 -3.8243
33 1 -3.5909 5.7843 -3.7674
34 1 3.9055 1.1866 -1.9753
35 1 6.3539 1.2059 -1.7125
36 1 6.0148 1.6882 2.3958
37 1 3.5561 1.6931 2.2553
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000851083882.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:39:18
Heat of formation + Delta-G solvation = -56.965609 kcal
Electronic energy + Delta-G solvation = -19937.503889 eV
Core-core repulsion = 16872.952952 eV
Total energy + Delta-G solvation = -3064.550937 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.60116 -39.69470 -36.47420 -34.16035 -33.84146 -32.03989 -31.34723 -31.29278
-26.97572 -25.23662 -23.84679 -23.40350 -22.75096 -20.96028 -19.74692 -17.40473
-17.07648 -16.57252 -15.90920 -15.81656 -15.70969 -15.29210 -14.51398 -14.03062
-13.86302 -13.72513 -13.49756 -13.25716 -12.75992 -12.35549 -12.23595 -11.98001
-11.77633 -11.49883 -11.37384 -11.11193 -10.78283 -10.74038 -10.47172 -10.19854
-9.74238 -9.68160 -9.49821 -9.29462 -9.24816 -9.20921 -8.68469 -6.16259
-4.19169 1.01635 1.08693 3.08336 3.18894 3.19710 3.27942 3.31809
3.70939 4.29214 4.34104 4.41155 4.72649 4.89362 5.03479 5.05392
5.12528 5.13574 5.23547 5.49890 5.56827 5.65089 5.76784 5.83316
5.87778 6.00324 6.09244 6.14828 6.20599 6.26789 6.42127 6.52181
6.57329 6.66155 7.01898 7.06957 7.43366 7.83681 8.35087 8.65899
8.98765 9.40546 10.95948
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.026822 B = 0.005249 C = 0.004822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1043.677517 B = 5332.848756 C = 5804.775035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.129 4.129
3 C 0.122 3.878
4 H 0.095 0.905
5 O -0.358 6.358
6 C 0.474 3.526
7 O -0.495 6.495
8 C 0.026 3.974
9 H 0.063 0.937
10 C -0.146 4.146
11 C -0.518 4.518
12 H 0.095 0.905
13 C 0.076 3.924
14 N -0.890 5.890
15 Si 0.882 3.118
16 H -0.275 1.275
17 H -0.293 1.293
18 H -0.265 1.265
19 C -0.037 4.037
20 C -0.145 4.145
21 C 0.095 3.905
22 N -0.488 5.488
23 C 0.095 3.905
24 C -0.163 4.163
25 H 0.064 0.936
26 H 0.053 0.947
27 H 0.061 0.939
28 H 0.074 0.926
29 H 0.072 0.928
30 H 0.057 0.943
31 H 0.052 0.948
32 H 0.044 0.956
33 H 0.267 0.733
34 H 0.143 0.857
35 H 0.156 0.844
36 H 0.156 0.844
37 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.484 -10.075 4.443 18.194
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.167 4.167
3 C 0.066 3.934
4 H 0.113 0.887
5 O -0.277 6.277
6 C 0.317 3.683
7 O -0.380 6.380
8 C 0.006 3.994
9 H 0.080 0.920
10 C -0.203 4.203
11 C -0.556 4.556
12 H 0.113 0.887
13 C -0.127 4.127
14 N -0.528 5.528
15 Si 0.711 3.289
16 H -0.202 1.202
17 H -0.221 1.221
18 H -0.190 1.190
19 C -0.046 4.046
20 C -0.165 4.165
21 C -0.062 4.062
22 N -0.198 5.198
23 C -0.061 4.061
24 C -0.183 4.183
25 H 0.083 0.917
26 H 0.072 0.928
27 H 0.081 0.919
28 H 0.093 0.907
29 H 0.090 0.910
30 H 0.076 0.924
31 H 0.070 0.930
32 H 0.063 0.937
33 H 0.077 0.923
34 H 0.160 0.840
35 H 0.174 0.826
36 H 0.173 0.827
37 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 15.023 -9.969 4.776 18.652
hybrid contribution -0.709 0.165 -0.916 1.170
sum 14.314 -9.805 3.859 17.774
Atomic orbital electron populations
1.21857 0.94009 1.01378 1.03727 1.21902 0.97560 0.94370 1.02831
1.21384 0.89459 0.94264 0.88260 0.88672 1.86631 1.39485 1.64418
1.37173 1.24491 0.77256 0.74731 0.91805 1.90546 1.54361 1.57038
1.36045 1.19141 0.99290 0.94057 0.86891 0.91980 1.22099 1.00225
0.99463 0.98516 1.20898 0.99818 1.33167 1.01676 0.88706 1.24905
0.94641 0.94741 0.98398 1.69859 1.14439 1.34866 1.33591 0.86943
0.80393 0.76835 0.84686 1.20227 1.22052 1.18980 1.20166 0.94840
0.95804 0.93755 1.22101 0.94571 0.99694 1.00110 1.22792 0.92786
0.95445 0.95171 1.67653 1.41181 1.11806 0.99110 1.22689 0.90454
0.95706 0.97279 1.21992 0.96476 1.01947 0.97912 0.91729 0.92812
0.91947 0.90694 0.90977 0.92377 0.92987 0.93731 0.92299 0.83964
0.82631 0.82660 0.84613
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.25 8.56 37.16 0.32 -1.94 16
2 C -0.13 -1.66 5.63 -26.73 -0.15 -1.81 16
3 C 0.12 1.78 2.50 -27.88 -0.07 1.71 16
4 H 0.10 1.49 7.09 -51.93 -0.37 1.12 16
5 O -0.36 -6.33 8.97 -39.25 -0.35 -6.68 16
6 C 0.47 10.11 5.71 36.01 0.21 10.32 16
7 O -0.49 -11.60 12.60 -18.74 -0.24 -11.84 16
8 C 0.03 0.59 2.33 -92.92 -0.22 0.38 16
9 H 0.06 1.41 7.20 -51.93 -0.37 1.04 16
10 C -0.15 -2.98 8.60 37.16 0.32 -2.66 16
11 C -0.52 -14.46 8.95 -34.44 -0.31 -14.77 16
12 H 0.10 2.98 7.00 -52.48 -0.37 2.61 16
13 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16
14 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16
15 Si 0.88 20.80 24.37 -169.99 -4.14 16.66 16
16 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16
17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
18 H -0.26 -5.87 6.53 56.52 0.37 -5.50 16
19 C -0.04 -0.48 5.04 -104.32 -0.53 -1.00 16
20 C -0.15 -1.75 9.45 -39.44 -0.37 -2.13 16
21 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16
22 N -0.49 -5.99 10.36 -13.25 -0.14 -6.13 16
23 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16
24 C -0.16 -1.80 9.80 -39.44 -0.39 -2.19 16
25 H 0.06 1.01 7.80 -51.93 -0.40 0.61 16
26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.06 1.10 6.06 -51.93 -0.31 0.79 16
28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
31 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16
32 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16
33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
34 H 0.14 1.63 7.72 -52.49 -0.41 1.23 16
35 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16
36 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16
37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16
LS Contribution 304.45 15.07 4.59 4.59
Total: -1.00 -31.41 304.45 -6.15 -37.56
By element:
Atomic # 1 Polarization: 7.14 SS G_CDS: -4.97 Total: 2.17 kcal
Atomic # 6 Polarization: -8.68 SS G_CDS: -1.68 Total: -10.35 kcal
Atomic # 7 Polarization: -32.75 SS G_CDS: 0.64 Total: -32.11 kcal
Atomic # 8 Polarization: -17.93 SS G_CDS: -0.59 Total: -18.52 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.66 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -31.41 -6.15 -37.56 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000851083882.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.405 kcal
(2) G-P(sol) polarization free energy of solvation -31.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.817 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.966 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds