Wall clock time and date at job start Mon Mar 30 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 6 6 C 1.34228 * 117.00100 * 89.99663 * 5 3 2 7 7 O 1.20817 * 119.99998 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.99508 * 179.97438 * 6 5 3 9 9 H 1.08996 * 109.47381 * 299.99866 * 8 6 5 10 10 C 1.52998 * 109.46940 * 60.00230 * 8 6 5 11 11 C 1.50702 * 109.46995 * 179.97438 * 8 6 5 12 12 H 1.08003 * 119.99605 * 0.02562 * 11 8 6 13 13 C 1.37873 * 120.00327 * 180.02562 * 11 8 6 14 14 N 1.31507 * 120.00301 * 180.02562 * 13 11 8 15 15 Si 1.86795 * 119.99724 * 359.97438 * 13 11 8 16 16 H 1.48503 * 109.47434 * 90.00656 * 15 13 11 17 17 H 1.48504 * 109.47302 * 210.00095 * 15 13 11 18 18 H 1.48496 * 109.47483 * 330.00418 * 15 13 11 19 19 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 20 20 C 1.38653 * 120.78730 * 84.72254 * 19 3 2 21 21 C 1.38206 * 119.15776 * 179.75648 * 20 19 3 22 22 N 1.31868 * 120.76563 * 0.53342 * 21 20 19 23 23 C 1.31869 * 121.72726 * 359.73806 * 22 21 20 24 24 C 1.38205 * 120.76146 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.08998 * 109.47473 * 60.00171 * 10 8 6 31 31 H 1.09007 * 109.46814 * 179.97438 * 10 8 6 32 32 H 1.09004 * 109.47075 * 299.99139 * 10 8 6 33 33 H 0.97007 * 120.00661 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.41795 * 0.02562 * 20 19 3 35 35 H 1.08004 * 119.60999 * 180.24558 * 21 20 19 36 36 H 1.07994 * 119.61503 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.41633 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7255 -1.2558 7 8 -0.2192 2.7369 -0.2654 8 6 0.0074 3.4227 -2.5083 9 1 0.7244 4.1970 -2.7808 10 6 -0.1030 2.4064 -3.6466 11 6 -1.3408 4.0497 -2.2628 12 1 -1.8133 3.9533 -1.2964 13 6 -1.9712 4.7463 -3.2719 14 7 -3.1475 5.2939 -3.0576 15 14 -1.1537 4.9136 -4.9431 16 1 -1.5620 3.7789 -5.8098 17 1 -1.5710 6.1922 -5.5726 18 1 0.3218 4.9026 -4.7758 19 6 3.5419 1.4443 0.1238 20 6 4.3466 1.3012 -0.9962 21 6 5.7202 1.3128 -0.8444 22 7 6.2659 1.4471 0.3485 23 6 5.5319 1.5800 1.4359 24 6 4.1519 1.5835 1.3611 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 -0.8201 1.6320 -3.3741 31 1 -0.4400 2.9106 -4.5524 32 1 0.8720 1.9525 -3.8243 33 1 -3.5909 5.7843 -3.7674 34 1 3.9055 1.1866 -1.9753 35 1 6.3539 1.2059 -1.7125 36 1 6.0148 1.6882 2.3958 37 1 3.5561 1.6931 2.2553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851083882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:18 Heat of formation + Delta-G solvation = -56.965609 kcal Electronic energy + Delta-G solvation = -19937.503889 eV Core-core repulsion = 16872.952952 eV Total energy + Delta-G solvation = -3064.550937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60116 -39.69470 -36.47420 -34.16035 -33.84146 -32.03989 -31.34723 -31.29278 -26.97572 -25.23662 -23.84679 -23.40350 -22.75096 -20.96028 -19.74692 -17.40473 -17.07648 -16.57252 -15.90920 -15.81656 -15.70969 -15.29210 -14.51398 -14.03062 -13.86302 -13.72513 -13.49756 -13.25716 -12.75992 -12.35549 -12.23595 -11.98001 -11.77633 -11.49883 -11.37384 -11.11193 -10.78283 -10.74038 -10.47172 -10.19854 -9.74238 -9.68160 -9.49821 -9.29462 -9.24816 -9.20921 -8.68469 -6.16259 -4.19169 1.01635 1.08693 3.08336 3.18894 3.19710 3.27942 3.31809 3.70939 4.29214 4.34104 4.41155 4.72649 4.89362 5.03479 5.05392 5.12528 5.13574 5.23547 5.49890 5.56827 5.65089 5.76784 5.83316 5.87778 6.00324 6.09244 6.14828 6.20599 6.26789 6.42127 6.52181 6.57329 6.66155 7.01898 7.06957 7.43366 7.83681 8.35087 8.65899 8.98765 9.40546 10.95948 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.005249 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.677517 B = 5332.848756 C = 5804.775035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.122 3.878 4 H 0.095 0.905 5 O -0.358 6.358 6 C 0.474 3.526 7 O -0.495 6.495 8 C 0.026 3.974 9 H 0.063 0.937 10 C -0.146 4.146 11 C -0.518 4.518 12 H 0.095 0.905 13 C 0.076 3.924 14 N -0.890 5.890 15 Si 0.882 3.118 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.265 1.265 19 C -0.037 4.037 20 C -0.145 4.145 21 C 0.095 3.905 22 N -0.488 5.488 23 C 0.095 3.905 24 C -0.163 4.163 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.267 0.733 34 H 0.143 0.857 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.484 -10.075 4.443 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.066 3.934 4 H 0.113 0.887 5 O -0.277 6.277 6 C 0.317 3.683 7 O -0.380 6.380 8 C 0.006 3.994 9 H 0.080 0.920 10 C -0.203 4.203 11 C -0.556 4.556 12 H 0.113 0.887 13 C -0.127 4.127 14 N -0.528 5.528 15 Si 0.711 3.289 16 H -0.202 1.202 17 H -0.221 1.221 18 H -0.190 1.190 19 C -0.046 4.046 20 C -0.165 4.165 21 C -0.062 4.062 22 N -0.198 5.198 23 C -0.061 4.061 24 C -0.183 4.183 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.023 -9.969 4.776 18.652 hybrid contribution -0.709 0.165 -0.916 1.170 sum 14.314 -9.805 3.859 17.774 Atomic orbital electron populations 1.21857 0.94009 1.01378 1.03727 1.21902 0.97560 0.94370 1.02831 1.21384 0.89459 0.94264 0.88260 0.88672 1.86631 1.39485 1.64418 1.37173 1.24491 0.77256 0.74731 0.91805 1.90546 1.54361 1.57038 1.36045 1.19141 0.99290 0.94057 0.86891 0.91980 1.22099 1.00225 0.99463 0.98516 1.20898 0.99818 1.33167 1.01676 0.88706 1.24905 0.94641 0.94741 0.98398 1.69859 1.14439 1.34866 1.33591 0.86943 0.80393 0.76835 0.84686 1.20227 1.22052 1.18980 1.20166 0.94840 0.95804 0.93755 1.22101 0.94571 0.99694 1.00110 1.22792 0.92786 0.95445 0.95171 1.67653 1.41181 1.11806 0.99110 1.22689 0.90454 0.95706 0.97279 1.21992 0.96476 1.01947 0.97912 0.91729 0.92812 0.91947 0.90694 0.90977 0.92377 0.92987 0.93731 0.92299 0.83964 0.82631 0.82660 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.56 37.16 0.32 -1.94 16 2 C -0.13 -1.66 5.63 -26.73 -0.15 -1.81 16 3 C 0.12 1.78 2.50 -27.88 -0.07 1.71 16 4 H 0.10 1.49 7.09 -51.93 -0.37 1.12 16 5 O -0.36 -6.33 8.97 -39.25 -0.35 -6.68 16 6 C 0.47 10.11 5.71 36.01 0.21 10.32 16 7 O -0.49 -11.60 12.60 -18.74 -0.24 -11.84 16 8 C 0.03 0.59 2.33 -92.92 -0.22 0.38 16 9 H 0.06 1.41 7.20 -51.93 -0.37 1.04 16 10 C -0.15 -2.98 8.60 37.16 0.32 -2.66 16 11 C -0.52 -14.46 8.95 -34.44 -0.31 -14.77 16 12 H 0.10 2.98 7.00 -52.48 -0.37 2.61 16 13 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 14 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 15 Si 0.88 20.80 24.37 -169.99 -4.14 16.66 16 16 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.26 -5.87 6.53 56.52 0.37 -5.50 16 19 C -0.04 -0.48 5.04 -104.32 -0.53 -1.00 16 20 C -0.15 -1.75 9.45 -39.44 -0.37 -2.13 16 21 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 22 N -0.49 -5.99 10.36 -13.25 -0.14 -6.13 16 23 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 24 C -0.16 -1.80 9.80 -39.44 -0.39 -2.19 16 25 H 0.06 1.01 7.80 -51.93 -0.40 0.61 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.10 6.06 -51.93 -0.31 0.79 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 32 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.14 1.63 7.72 -52.49 -0.41 1.23 16 35 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -31.41 304.45 -6.15 -37.56 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.97 Total: 2.17 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.68 Total: -10.35 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.64 Total: -32.11 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.59 Total: -18.52 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.66 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.41 -6.15 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851083882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.405 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds