Wall clock time and date at job start Mon Mar 30 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 6 6 C 1.34228 * 117.00100 * 89.99663 * 5 3 2 7 7 O 1.20817 * 119.99998 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.99508 * 179.97438 * 6 5 3 9 9 H 1.08996 * 109.47381 * 299.99866 * 8 6 5 10 10 C 1.52998 * 109.46940 * 60.00230 * 8 6 5 11 11 C 1.50702 * 109.46995 * 179.97438 * 8 6 5 12 12 H 1.08003 * 119.99605 * 0.02562 * 11 8 6 13 13 C 1.37873 * 120.00327 * 180.02562 * 11 8 6 14 14 N 1.31507 * 120.00301 * 180.02562 * 13 11 8 15 15 Si 1.86795 * 119.99724 * 359.97438 * 13 11 8 16 16 H 1.48503 * 109.47434 * 90.00656 * 15 13 11 17 17 H 1.48504 * 109.47302 * 210.00095 * 15 13 11 18 18 H 1.48496 * 109.47483 * 330.00418 * 15 13 11 19 19 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 20 20 C 1.38653 * 120.78730 * 84.72254 * 19 3 2 21 21 C 1.38206 * 119.15776 * 179.75648 * 20 19 3 22 22 N 1.31868 * 120.76563 * 0.53342 * 21 20 19 23 23 C 1.31869 * 121.72726 * 359.73806 * 22 21 20 24 24 C 1.38205 * 120.76146 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.08998 * 109.47473 * 60.00171 * 10 8 6 31 31 H 1.09007 * 109.46814 * 179.97438 * 10 8 6 32 32 H 1.09004 * 109.47075 * 299.99139 * 10 8 6 33 33 H 0.97007 * 120.00661 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.41795 * 0.02562 * 20 19 3 35 35 H 1.08004 * 119.60999 * 180.24558 * 21 20 19 36 36 H 1.07994 * 119.61503 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.41633 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7255 -1.2558 7 8 -0.2192 2.7369 -0.2654 8 6 0.0074 3.4227 -2.5083 9 1 0.7244 4.1970 -2.7808 10 6 -0.1030 2.4064 -3.6466 11 6 -1.3408 4.0497 -2.2628 12 1 -1.8133 3.9533 -1.2964 13 6 -1.9712 4.7463 -3.2719 14 7 -3.1475 5.2939 -3.0576 15 14 -1.1537 4.9136 -4.9431 16 1 -1.5620 3.7789 -5.8098 17 1 -1.5710 6.1922 -5.5726 18 1 0.3218 4.9026 -4.7758 19 6 3.5419 1.4443 0.1238 20 6 4.3466 1.3012 -0.9962 21 6 5.7202 1.3128 -0.8444 22 7 6.2659 1.4471 0.3485 23 6 5.5319 1.5800 1.4359 24 6 4.1519 1.5835 1.3611 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 -0.8201 1.6320 -3.3741 31 1 -0.4400 2.9106 -4.5524 32 1 0.8720 1.9525 -3.8243 33 1 -3.5909 5.7843 -3.7674 34 1 3.9055 1.1866 -1.9753 35 1 6.3539 1.2059 -1.7125 36 1 6.0148 1.6882 2.3958 37 1 3.5561 1.6931 2.2553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851083882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:18 Heat of formation + Delta-G solvation = -76.415609 kcal Electronic energy + Delta-G solvation = -19938.347304 eV Core-core repulsion = 16872.952952 eV Total energy + Delta-G solvation = -3065.394352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.86756 -40.87939 -37.94847 -35.97116 -35.19479 -33.35155 -33.04024 -32.14368 -28.14833 -27.17178 -25.40901 -24.41475 -23.73258 -22.24658 -21.29296 -19.07081 -18.31892 -18.23804 -17.43709 -17.01057 -16.86485 -16.50807 -16.08042 -15.22938 -15.07350 -14.88691 -14.61780 -14.51764 -14.40945 -14.07160 -13.59380 -13.44367 -13.07828 -12.95465 -12.66960 -12.55035 -12.43641 -12.24825 -11.94241 -11.60589 -11.48169 -11.28728 -11.02268 -10.77891 -10.61850 -10.42560 -10.08814 -8.32156 -6.42003 0.14122 0.20613 1.32264 1.39263 1.42046 1.49887 1.76904 2.30802 2.83832 3.01246 3.33336 3.60675 3.77020 3.81595 3.96625 4.08029 4.19176 4.20380 4.35585 4.35974 4.45601 4.54216 4.68523 4.71863 4.75558 4.90280 4.91060 4.93197 4.96604 5.05715 5.26404 5.29360 5.37135 5.43904 5.55603 5.74364 6.20980 6.70249 6.99626 7.00384 7.23212 8.84436 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.005249 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.677517 B = 5332.848756 C = 5804.775035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.119 3.881 4 H 0.080 0.920 5 O -0.349 6.349 6 C 0.481 3.519 7 O -0.527 6.527 8 C 0.019 3.981 9 H 0.074 0.926 10 C -0.139 4.139 11 C -0.529 4.529 12 H 0.039 0.961 13 C 0.017 3.983 14 N -0.944 5.944 15 Si 0.951 3.049 16 H -0.257 1.257 17 H -0.296 1.296 18 H -0.235 1.235 19 C -0.053 4.053 20 C -0.153 4.153 21 C 0.093 3.907 22 N -0.507 5.507 23 C 0.095 3.905 24 C -0.164 4.164 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.270 0.730 34 H 0.147 0.853 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.486 -11.406 3.298 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.064 3.936 4 H 0.098 0.902 5 O -0.266 6.266 6 C 0.325 3.675 7 O -0.415 6.415 8 C -0.001 4.001 9 H 0.092 0.908 10 C -0.196 4.196 11 C -0.566 4.566 12 H 0.058 0.942 13 C -0.181 4.181 14 N -0.584 5.584 15 Si 0.775 3.225 16 H -0.182 1.182 17 H -0.224 1.224 18 H -0.158 1.158 19 C -0.061 4.061 20 C -0.172 4.172 21 C -0.063 4.063 22 N -0.216 5.216 23 C -0.061 4.061 24 C -0.184 4.184 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.198 0.802 36 H 0.201 0.799 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 18.064 -11.330 3.639 21.631 hybrid contribution -1.627 0.548 -0.391 1.761 sum 16.437 -10.782 3.248 19.924 Atomic orbital electron populations 1.21813 0.95725 1.02022 1.01219 1.21901 0.95801 0.93449 1.04745 1.21623 0.91022 0.94784 0.86141 0.90188 1.86555 1.37266 1.63898 1.38896 1.24070 0.77965 0.74635 0.90796 1.90543 1.55590 1.58344 1.36988 1.19062 0.96742 0.95265 0.88998 0.90847 1.22004 1.02401 0.98480 0.96761 1.21001 1.02082 1.33918 0.99642 0.94244 1.25877 0.95068 0.93977 1.03206 1.70032 1.16629 1.36315 1.35375 0.85830 0.80862 0.77104 0.78665 1.18232 1.22401 1.15812 1.20102 0.93409 0.97563 0.95020 1.22203 0.94995 0.99978 1.00048 1.23179 0.92773 0.94551 0.95785 1.67723 1.41814 1.12317 0.99785 1.23168 0.90333 0.94527 0.98120 1.22207 0.96951 1.01292 0.97938 0.93461 0.90539 0.95240 0.87968 0.89724 0.92955 0.93141 0.89759 0.92102 0.83516 0.80204 0.79868 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.56 71.98 0.62 -3.79 16 2 C -0.12 -2.89 5.63 30.59 0.17 -2.72 16 3 C 0.12 3.35 2.50 29.85 0.07 3.42 16 4 H 0.08 2.51 7.09 -2.38 -0.02 2.49 16 5 O -0.35 -11.90 8.97 -51.40 -0.46 -12.36 16 6 C 0.48 20.67 5.71 71.24 0.41 21.08 16 7 O -0.53 -25.79 12.60 21.99 0.28 -25.51 16 8 C 0.02 0.86 2.33 -12.29 -0.03 0.83 16 9 H 0.07 3.20 7.20 -2.39 -0.02 3.19 16 10 C -0.14 -5.37 8.60 71.98 0.62 -4.75 16 11 C -0.53 -30.56 8.95 25.60 0.23 -30.33 16 12 H 0.04 2.65 7.00 -2.91 -0.02 2.63 16 13 C 0.02 0.95 5.45 84.65 0.46 1.41 16 14 N -0.94 -58.88 13.96 21.44 0.30 -58.58 16 15 Si 0.95 42.11 24.37 68.60 1.67 43.78 16 16 H -0.26 -10.58 6.87 99.48 0.68 -9.90 16 17 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.23 -9.22 6.53 99.48 0.65 -8.57 16 19 C -0.05 -1.24 5.04 -19.67 -0.10 -1.34 16 20 C -0.15 -3.30 9.45 22.36 0.21 -3.09 16 21 C 0.09 1.85 11.18 84.68 0.95 2.79 16 22 N -0.51 -11.06 10.36 -195.84 -2.03 -13.09 16 23 C 0.09 1.77 11.18 84.68 0.95 2.71 16 24 C -0.16 -3.24 9.80 22.36 0.22 -3.02 16 25 H 0.05 1.51 7.80 -2.39 -0.02 1.50 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.03 1.04 6.06 -2.38 -0.01 1.02 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.96 3.27 -2.38 -0.01 1.95 16 32 H 0.08 2.57 8.11 -2.38 -0.02 2.55 16 33 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 34 H 0.15 2.96 7.72 -2.91 -0.02 2.94 16 35 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -71.37 304.45 5.52 -65.85 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.98 Total: 16.70 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.78 Total: -16.79 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.73 Total: -71.67 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.18 Total: -37.87 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.67 Total: 43.78 kcal Total: -71.37 5.52 -65.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851083882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.567 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds