Wall clock time and date at job start Mon Mar 30 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 6 6 C 1.34228 * 117.00100 * 89.99663 * 5 3 2 7 7 O 1.20817 * 119.99998 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.99508 * 179.97438 * 6 5 3 9 9 H 1.08995 * 109.47448 * 60.00218 * 8 6 5 10 10 C 1.52996 * 109.47297 * 299.99988 * 8 6 5 11 11 C 1.50702 * 109.46995 * 179.97438 * 8 6 5 12 12 H 1.08003 * 119.99605 * 0.02562 * 11 8 6 13 13 C 1.37873 * 120.00327 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99673 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 120.00118 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47168 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47201 * 119.99761 * 15 13 11 18 18 H 1.48508 * 109.46749 * 239.99574 * 15 13 11 19 19 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 20 20 C 1.38653 * 120.78730 * 84.72254 * 19 3 2 21 21 C 1.38206 * 119.15776 * 179.75648 * 20 19 3 22 22 N 1.31868 * 120.76563 * 0.53342 * 21 20 19 23 23 C 1.31869 * 121.72726 * 359.73806 * 22 21 20 24 24 C 1.38205 * 120.76146 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09007 * 109.46983 * 180.02562 * 10 8 6 31 31 H 1.09005 * 109.47249 * 299.99716 * 10 8 6 32 32 H 1.08998 * 109.47637 * 59.99914 * 10 8 6 33 33 H 0.97009 * 119.99807 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.41795 * 0.02562 * 20 19 3 35 35 H 1.08004 * 119.60999 * 180.24558 * 21 20 19 36 36 H 1.07994 * 119.61503 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.41633 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7255 -1.2558 7 8 -0.2192 2.7369 -0.2654 8 6 0.0074 3.4227 -2.5083 9 1 -0.0713 2.6987 -3.3193 10 6 1.0139 4.5096 -2.8908 11 6 -1.3408 4.0497 -2.2628 12 1 -1.8133 3.9533 -1.2964 13 6 -1.9712 4.7463 -3.2719 14 7 -1.3956 4.8640 -4.4485 15 14 -3.6421 5.5241 -2.9674 16 1 -4.0690 5.2494 -1.5719 17 1 -3.5509 6.9912 -3.1779 18 1 -4.6348 4.9494 -3.9106 19 6 3.5419 1.4443 0.1238 20 6 4.3466 1.3012 -0.9962 21 6 5.7202 1.3128 -0.8444 22 7 6.2659 1.4471 0.3485 23 6 5.5319 1.5800 1.4359 24 6 4.1519 1.5835 1.3611 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 0.6771 5.0142 -3.7964 31 1 1.0925 5.2337 -2.0798 32 1 1.9888 4.0558 -3.0684 33 1 -1.8390 5.3545 -5.1584 34 1 3.9055 1.1866 -1.9753 35 1 6.3539 1.2059 -1.7125 36 1 6.0148 1.6882 2.3958 37 1 3.5561 1.6931 2.2553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851083883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:21 Heat of formation + Delta-G solvation = -66.959998 kcal Electronic energy + Delta-G solvation = -19862.943695 eV Core-core repulsion = 16797.959369 eV Total energy + Delta-G solvation = -3064.984326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50210 -39.56600 -36.34571 -34.03674 -33.76721 -31.98151 -31.24327 -30.57319 -26.87710 -25.24251 -23.65616 -23.16343 -22.69341 -20.90875 -19.72277 -17.22124 -16.89964 -16.33804 -15.77401 -15.72322 -15.53890 -15.24221 -14.30968 -13.89407 -13.85763 -13.65914 -13.50619 -12.92009 -12.49176 -12.28627 -11.83141 -11.71805 -11.52874 -11.28790 -11.08505 -10.82976 -10.74252 -10.70558 -10.39596 -10.14608 -10.08068 -9.63119 -9.42991 -9.20200 -9.12227 -9.07211 -8.48714 -6.14070 -4.19548 1.08098 1.15877 3.24191 3.27048 3.31285 3.35048 3.44998 3.77834 4.37275 4.40392 4.50156 4.79896 4.96703 5.09751 5.12323 5.19008 5.19625 5.32188 5.56742 5.62692 5.74195 5.87253 5.93519 6.00736 6.04012 6.20327 6.40621 6.55582 6.62355 6.64155 6.82911 6.84409 7.17638 7.39464 7.70470 7.89859 7.90866 8.10214 8.79881 8.90214 9.46378 10.93346 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.004881 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.194447 B = 5735.662417 C = 6219.100672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.120 3.880 4 H 0.093 0.907 5 O -0.356 6.356 6 C 0.466 3.534 7 O -0.511 6.511 8 C 0.058 3.942 9 H 0.063 0.937 10 C -0.134 4.134 11 C -0.512 4.512 12 H 0.076 0.924 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.036 4.036 20 C -0.144 4.144 21 C 0.095 3.905 22 N -0.489 5.489 23 C 0.094 3.906 24 C -0.165 4.165 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.030 0.970 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -8.110 7.297 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.065 3.935 4 H 0.111 0.889 5 O -0.275 6.275 6 C 0.311 3.689 7 O -0.397 6.397 8 C 0.039 3.961 9 H 0.081 0.919 10 C -0.191 4.191 11 C -0.550 4.550 12 H 0.094 0.906 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.045 4.045 20 C -0.163 4.163 21 C -0.062 4.062 22 N -0.198 5.198 23 C -0.062 4.062 24 C -0.184 4.184 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.989 -8.037 7.520 15.553 hybrid contribution -1.843 0.437 0.139 1.899 sum 9.146 -7.600 7.659 14.144 Atomic orbital electron populations 1.21843 0.94126 1.01241 1.03633 1.21896 0.97491 0.94522 1.02757 1.21353 0.89412 0.94174 0.88596 0.88905 1.86683 1.39789 1.64262 1.36755 1.25322 0.76894 0.74170 0.92525 1.90495 1.54692 1.57983 1.36529 1.18765 0.95814 0.94196 0.87293 0.91905 1.21735 0.95381 0.98653 1.03374 1.21165 1.00886 1.33415 0.99497 0.90551 1.24935 0.98256 0.95959 0.94835 1.69889 1.38308 1.41950 1.02868 0.86342 0.83248 0.78816 0.78530 1.19514 1.20887 1.20882 1.20178 0.94929 0.95658 0.93708 1.22116 0.94549 0.99495 1.00171 1.22794 0.92810 0.95441 0.95146 1.67649 1.41167 1.11869 0.99111 1.22671 0.90453 0.95851 0.97261 1.21979 0.96461 1.02116 0.97893 0.91848 0.92900 0.91956 0.90815 0.90977 0.88547 0.95053 0.95836 0.92733 0.83890 0.82608 0.82736 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.56 37.16 0.32 -1.99 16 2 C -0.13 -1.75 5.63 -26.73 -0.15 -1.90 16 3 C 0.12 1.86 2.50 -27.88 -0.07 1.79 16 4 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 5 O -0.36 -6.74 8.97 -39.25 -0.35 -7.09 16 6 C 0.47 10.42 5.71 36.01 0.21 10.63 16 7 O -0.51 -12.14 12.60 -18.74 -0.24 -12.38 16 8 C 0.06 1.44 2.74 -92.92 -0.25 1.19 16 9 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 10 C -0.13 -3.12 8.90 37.16 0.33 -2.79 16 11 C -0.51 -14.03 8.37 -34.44 -0.29 -14.32 16 12 H 0.08 2.18 6.76 -52.48 -0.35 1.83 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 15 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.04 -0.50 5.04 -104.32 -0.53 -1.02 16 20 C -0.14 -1.86 9.45 -39.44 -0.37 -2.24 16 21 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 22 N -0.49 -6.29 10.36 -13.25 -0.14 -6.43 16 23 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 24 C -0.16 -1.92 9.80 -39.44 -0.39 -2.31 16 25 H 0.06 1.01 7.80 -51.93 -0.40 0.60 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.14 6.06 -51.93 -0.31 0.82 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.14 1.81 7.72 -52.49 -0.41 1.40 16 35 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -29.63 311.28 -7.21 -36.84 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.10 Total: 1.63 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.68 Total: -9.58 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.49 Total: -30.27 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.59 Total: -19.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.63 -7.21 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851083883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.124 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds