Wall clock time and date at job start Mon Mar 30 2020 06:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 6 6 C 1.34228 * 117.00100 * 89.99663 * 5 3 2 7 7 O 1.20817 * 119.99998 * 359.97438 * 6 5 3 8 8 C 1.50703 * 119.99508 * 179.97438 * 6 5 3 9 9 H 1.08995 * 109.47448 * 60.00218 * 8 6 5 10 10 C 1.52996 * 109.47297 * 299.99988 * 8 6 5 11 11 C 1.50702 * 109.46995 * 179.97438 * 8 6 5 12 12 H 1.08003 * 119.99605 * 0.02562 * 11 8 6 13 13 C 1.37873 * 120.00327 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99673 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 120.00118 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47168 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47201 * 119.99761 * 15 13 11 18 18 H 1.48508 * 109.46749 * 239.99574 * 15 13 11 19 19 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 20 20 C 1.38653 * 120.78730 * 84.72254 * 19 3 2 21 21 C 1.38206 * 119.15776 * 179.75648 * 20 19 3 22 22 N 1.31868 * 120.76563 * 0.53342 * 21 20 19 23 23 C 1.31869 * 121.72726 * 359.73806 * 22 21 20 24 24 C 1.38205 * 120.76146 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09007 * 109.46983 * 180.02562 * 10 8 6 31 31 H 1.09005 * 109.47249 * 299.99716 * 10 8 6 32 32 H 1.08998 * 109.47637 * 59.99914 * 10 8 6 33 33 H 0.97009 * 119.99807 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.41795 * 0.02562 * 20 19 3 35 35 H 1.08004 * 119.60999 * 180.24558 * 21 20 19 36 36 H 1.07994 * 119.61503 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.41633 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7255 -1.2558 7 8 -0.2192 2.7369 -0.2654 8 6 0.0074 3.4227 -2.5083 9 1 -0.0713 2.6987 -3.3193 10 6 1.0139 4.5096 -2.8908 11 6 -1.3408 4.0497 -2.2628 12 1 -1.8133 3.9533 -1.2964 13 6 -1.9712 4.7463 -3.2719 14 7 -1.3956 4.8640 -4.4485 15 14 -3.6421 5.5241 -2.9674 16 1 -4.0690 5.2494 -1.5719 17 1 -3.5509 6.9912 -3.1779 18 1 -4.6348 4.9494 -3.9106 19 6 3.5419 1.4443 0.1238 20 6 4.3466 1.3012 -0.9962 21 6 5.7202 1.3128 -0.8444 22 7 6.2659 1.4471 0.3485 23 6 5.5319 1.5800 1.4359 24 6 4.1519 1.5835 1.3611 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 0.6771 5.0142 -3.7964 31 1 1.0925 5.2337 -2.0798 32 1 1.9888 4.0558 -3.0684 33 1 -1.8390 5.3545 -5.1584 34 1 3.9055 1.1866 -1.9753 35 1 6.3539 1.2059 -1.7125 36 1 6.0148 1.6882 2.3958 37 1 3.5561 1.6931 2.2553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851083883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:20 Heat of formation + Delta-G solvation = -82.556465 kcal Electronic energy + Delta-G solvation = -19863.620009 eV Core-core repulsion = 16797.959369 eV Total energy + Delta-G solvation = -3065.660640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81005 -40.85027 -37.88851 -35.93026 -35.17769 -33.05363 -32.56706 -32.14401 -28.09839 -27.28918 -25.12449 -24.39933 -23.73506 -22.28361 -21.31449 -18.68913 -18.30653 -18.17185 -17.21642 -17.04744 -16.82394 -16.49122 -15.98389 -15.19195 -14.99072 -14.83402 -14.61346 -14.52959 -14.06112 -13.80112 -13.37408 -13.16423 -12.95822 -12.77446 -12.68993 -12.55230 -12.43611 -12.31438 -12.07043 -11.92671 -11.56184 -11.11041 -10.96738 -10.62754 -10.52925 -10.42684 -10.09129 -8.20805 -6.33586 0.14235 0.20411 1.39993 1.42210 1.48401 1.54511 1.86908 2.43013 2.83781 3.09674 3.35255 3.60214 3.80235 3.81942 4.03786 4.08967 4.19167 4.20762 4.44313 4.47312 4.66384 4.68091 4.74874 4.88861 4.89830 4.90308 4.91839 4.98084 5.05351 5.27862 5.29772 5.40989 5.55239 5.69561 5.74105 5.87608 6.09770 6.73504 6.99429 7.07825 7.35501 8.85874 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.004881 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.194447 B = 5735.662417 C = 6219.100672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.118 3.882 4 H 0.083 0.917 5 O -0.354 6.354 6 C 0.476 3.524 7 O -0.530 6.530 8 C 0.051 3.949 9 H 0.049 0.951 10 C -0.121 4.121 11 C -0.535 4.535 12 H 0.057 0.943 13 C 0.022 3.978 14 N -0.910 5.910 15 Si 0.962 3.038 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.052 4.052 20 C -0.155 4.155 21 C 0.094 3.906 22 N -0.506 5.506 23 C 0.095 3.905 24 C -0.163 4.163 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.025 0.975 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.047 0.953 33 H 0.267 0.733 34 H 0.141 0.859 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.313 -8.607 8.209 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.063 3.937 4 H 0.101 0.899 5 O -0.272 6.272 6 C 0.321 3.679 7 O -0.419 6.419 8 C 0.032 3.968 9 H 0.066 0.934 10 C -0.178 4.178 11 C -0.573 4.573 12 H 0.076 0.924 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.787 3.213 16 H -0.200 1.200 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.061 4.061 20 C -0.175 4.175 21 C -0.063 4.063 22 N -0.215 5.215 23 C -0.061 4.061 24 C -0.183 4.183 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.197 0.803 36 H 0.204 0.796 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.009 -8.545 8.421 16.975 hybrid contribution -2.068 0.534 -0.108 2.138 sum 9.941 -8.011 8.313 15.235 Atomic orbital electron populations 1.21797 0.95528 1.02041 1.01219 1.21905 0.96058 0.93519 1.04539 1.21628 0.91002 0.94765 0.86332 0.89947 1.86605 1.37812 1.63870 1.38874 1.24648 0.77688 0.74178 0.91385 1.90476 1.55557 1.58856 1.36977 1.18651 0.95545 0.94421 0.88188 0.93369 1.21558 0.96114 0.98067 1.02108 1.21277 1.02440 1.34550 0.98989 0.92431 1.25626 1.01372 0.96170 0.94592 1.69969 1.39449 1.42074 1.03315 0.85446 0.79435 0.78320 0.78117 1.20038 1.19937 1.19922 1.20129 0.93532 0.97410 0.95000 1.22173 0.95140 1.00194 0.99959 1.23143 0.92644 0.94618 0.95850 1.67726 1.41751 1.12339 0.99709 1.23201 0.90336 0.94434 0.98128 1.22213 0.96962 1.01261 0.97833 0.92957 0.90488 0.95594 0.87767 0.90306 0.90443 0.95485 0.93445 0.92319 0.84156 0.80332 0.79644 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.56 71.98 0.62 -3.86 16 2 C -0.12 -3.15 5.63 30.59 0.17 -2.97 16 3 C 0.12 3.55 2.50 29.85 0.07 3.62 16 4 H 0.08 2.67 7.09 -2.38 -0.02 2.66 16 5 O -0.35 -13.41 8.97 -51.40 -0.46 -13.87 16 6 C 0.48 21.70 5.71 71.24 0.41 22.11 16 7 O -0.53 -25.85 12.60 21.99 0.28 -25.57 16 8 C 0.05 2.58 2.74 -12.29 -0.03 2.55 16 9 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 10 C -0.12 -5.69 8.90 71.98 0.64 -5.05 16 11 C -0.53 -30.02 8.37 25.60 0.21 -29.81 16 12 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 13 C 0.02 1.21 5.30 84.65 0.45 1.66 16 14 N -0.91 -50.23 11.32 21.45 0.24 -49.99 16 15 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 C -0.05 -1.34 5.04 -19.67 -0.10 -1.44 16 20 C -0.15 -3.80 9.45 22.36 0.21 -3.59 16 21 C 0.09 2.06 11.18 84.68 0.95 3.01 16 22 N -0.51 -11.79 10.36 -195.84 -2.03 -13.82 16 23 C 0.10 1.88 11.18 84.68 0.95 2.83 16 24 C -0.16 -3.41 9.80 22.36 0.22 -3.19 16 25 H 0.05 1.66 7.80 -2.39 -0.02 1.64 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.02 0.95 6.06 -2.38 -0.01 0.93 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 3.96 6.07 -2.38 -0.01 3.94 16 31 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.05 1.95 8.11 -2.39 -0.02 1.93 16 33 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 34 H 0.14 3.43 7.72 -2.91 -0.02 3.41 16 35 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -63.72 311.28 5.88 -57.84 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.06 Total: 13.92 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.77 Total: -14.13 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -1.79 Total: -63.80 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.18 Total: -39.44 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.72 5.88 -57.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851083883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.716 kcal (2) G-P(sol) polarization free energy of solvation -63.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds