Wall clock time and date at job start Mon Mar 30 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46838 * 2 1 4 4 H 1.09004 * 109.47441 * 304.99760 * 3 2 1 5 5 O 1.45196 * 109.47329 * 65.00298 * 3 2 1 6 6 C 1.34228 * 117.00058 * 269.99650 * 5 3 2 7 7 O 1.20833 * 119.99787 * 0.02562 * 6 5 3 8 8 C 1.50697 * 120.00167 * 179.97438 * 6 5 3 9 9 H 1.08998 * 109.46862 * 60.00942 * 8 6 5 10 10 C 1.52997 * 109.47466 * 300.00387 * 8 6 5 11 11 C 1.50706 * 109.47178 * 180.02562 * 8 6 5 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 6 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 6 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 C 1.50706 * 109.46831 * 185.00296 * 3 2 1 20 20 C 1.38655 * 120.78671 * 279.71541 * 19 3 2 21 21 C 1.38203 * 119.15911 * 179.75931 * 20 19 3 22 22 N 1.31870 * 120.76749 * 0.52866 * 21 20 19 23 23 C 1.31877 * 121.72061 * 359.74664 * 22 21 20 24 24 C 1.38200 * 120.76593 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46876 * 59.99915 * 1 2 3 26 26 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46756 * 299.99943 * 1 2 3 28 28 H 1.08997 * 109.47050 * 240.00434 * 2 1 3 29 29 H 1.09001 * 109.47491 * 119.99738 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 8 6 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 8 6 32 32 H 1.09004 * 109.47261 * 179.97438 * 10 8 6 33 33 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.42205 * 0.02562 * 20 19 3 35 35 H 1.08005 * 119.61857 * 180.25523 * 21 20 19 36 36 H 1.08000 * 119.61124 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.41454 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6559 2.0917 1.2407 6 6 0.4727 2.7255 1.2560 7 8 -0.2193 2.7370 0.2655 8 6 0.0070 3.4216 2.5087 9 1 0.7239 4.1959 2.7820 10 6 -0.1038 2.4046 3.6463 11 6 -1.3412 4.0489 2.2633 12 1 -1.8136 3.9526 1.2969 13 6 -1.9718 4.7447 3.2727 14 7 -1.3968 4.8615 4.4497 15 14 -3.6432 5.5215 2.9687 16 1 -4.0701 5.2471 1.5731 17 1 -4.6355 4.9459 3.9116 18 1 -3.5530 6.9887 3.1797 19 6 3.5419 1.4443 -0.1239 20 6 4.3455 1.2101 0.9815 21 6 5.7190 1.2146 0.8286 22 7 6.2660 1.4482 -0.3484 23 6 5.5330 1.6802 -1.4199 24 6 4.1530 1.6860 -1.3447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.8711 1.9505 3.8240 31 1 -0.8207 1.6304 3.3730 32 1 -0.4402 2.9082 4.5526 33 1 -1.8403 5.3514 5.1597 34 1 3.9036 1.0223 1.9489 35 1 6.3519 1.0289 1.6838 36 1 6.0168 1.8671 -2.3672 37 1 3.5583 1.8763 -2.2258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851083884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:23 Heat of formation + Delta-G solvation = -66.947227 kcal Electronic energy + Delta-G solvation = -19870.267638 eV Core-core repulsion = 16805.283866 eV Total energy + Delta-G solvation = -3064.983772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50462 -39.56867 -36.33768 -34.02011 -33.77906 -31.97912 -31.25188 -30.58949 -26.85591 -25.23760 -23.65454 -23.20649 -22.69030 -20.89980 -19.70334 -17.24770 -16.92725 -16.23309 -15.78808 -15.72280 -15.66338 -15.18674 -14.32409 -13.94289 -13.84348 -13.66419 -13.28158 -13.00919 -12.70058 -12.08645 -11.94342 -11.64705 -11.51160 -11.29361 -11.09441 -10.81721 -10.74497 -10.70680 -10.43020 -10.10715 -10.07768 -9.65179 -9.44379 -9.20793 -9.11788 -9.07099 -8.48658 -6.13937 -4.19453 1.07517 1.14602 3.24635 3.27230 3.31342 3.35184 3.45113 3.78275 4.37344 4.39861 4.50469 4.78300 4.96311 5.09964 5.12160 5.18788 5.19803 5.32590 5.55971 5.63161 5.73685 5.87130 5.93438 6.01779 6.04733 6.20644 6.40179 6.56476 6.62214 6.63381 6.82014 6.84118 7.17866 7.39375 7.70460 7.89137 7.90945 8.10276 8.80063 8.90351 9.46476 10.93492 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.004777 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.474741 B = 5860.291310 C = 6143.829348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.120 3.880 4 H 0.093 0.907 5 O -0.356 6.356 6 C 0.466 3.534 7 O -0.511 6.511 8 C 0.058 3.942 9 H 0.063 0.937 10 C -0.133 4.133 11 C -0.512 4.512 12 H 0.076 0.924 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.037 4.037 20 C -0.143 4.143 21 C 0.094 3.906 22 N -0.488 5.488 23 C 0.094 3.906 24 C -0.164 4.164 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.263 0.737 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 -8.612 -7.127 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.065 3.935 4 H 0.110 0.890 5 O -0.275 6.275 6 C 0.311 3.689 7 O -0.397 6.397 8 C 0.039 3.961 9 H 0.080 0.920 10 C -0.191 4.191 11 C -0.550 4.550 12 H 0.095 0.905 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.045 4.045 20 C -0.163 4.163 21 C -0.062 4.062 22 N -0.197 5.197 23 C -0.062 4.062 24 C -0.183 4.183 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.741 -8.540 -7.350 15.566 hybrid contribution -1.838 0.449 -0.139 1.897 sum 8.903 -8.092 -7.488 14.171 Atomic orbital electron populations 1.21846 0.94137 1.01225 1.03662 1.21893 0.97500 0.94539 1.02713 1.21361 0.89356 0.94227 0.88589 0.88954 1.86690 1.39706 1.64316 1.36748 1.25324 0.76930 0.74315 0.92344 1.90499 1.54670 1.57996 1.36553 1.18768 0.97968 0.93868 0.85514 0.91963 1.21731 0.97897 0.97612 1.01819 1.21165 1.01515 1.32915 0.99359 0.90549 1.24933 0.98260 0.95928 0.94861 1.69882 1.38552 1.41714 1.02873 0.86342 0.83255 0.78810 0.78534 1.19514 1.20882 1.20891 1.20177 0.94935 0.95628 0.93776 1.22111 0.94588 0.99563 1.00033 1.22793 0.92786 0.95507 0.95142 1.67656 1.41157 1.11441 0.99493 1.22681 0.90475 0.95855 0.97238 1.22004 0.96455 1.01761 0.98124 0.91885 0.92936 0.91868 0.90859 0.90976 0.95843 0.94995 0.88574 0.92731 0.83964 0.82604 0.82717 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.57 37.16 0.32 -2.01 16 2 C -0.13 -1.75 5.63 -26.73 -0.15 -1.90 16 3 C 0.12 1.86 2.49 -27.88 -0.07 1.79 16 4 H 0.09 1.51 7.06 -51.93 -0.37 1.15 16 5 O -0.36 -6.75 9.13 -39.25 -0.36 -7.11 16 6 C 0.47 10.43 5.71 36.00 0.21 10.64 16 7 O -0.51 -12.15 12.60 -18.76 -0.24 -12.39 16 8 C 0.06 1.43 2.74 -92.92 -0.25 1.18 16 9 H 0.06 1.62 8.14 -51.93 -0.42 1.19 16 10 C -0.13 -3.05 8.90 37.16 0.33 -2.72 16 11 C -0.51 -14.04 8.37 -34.44 -0.29 -14.33 16 12 H 0.08 2.18 6.76 -52.49 -0.35 1.83 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.04 -0.50 5.01 -104.32 -0.52 -1.02 16 20 C -0.14 -1.84 9.46 -39.44 -0.37 -2.22 16 21 C 0.09 1.12 11.18 -17.55 -0.20 0.93 16 22 N -0.49 -6.27 10.36 -13.25 -0.14 -6.40 16 23 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 24 C -0.16 -1.92 9.78 -39.45 -0.39 -2.30 16 25 H 0.06 1.01 7.80 -51.93 -0.40 0.60 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.17 6.06 -51.93 -0.31 0.85 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.02 0.47 8.11 -51.93 -0.42 0.04 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.14 1.77 7.85 -52.49 -0.41 1.35 16 35 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -29.65 311.49 -7.21 -36.86 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.11 Total: 1.57 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.68 Total: -9.53 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.49 Total: -30.26 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.59 Total: -19.50 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.65 -7.21 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851083884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.087 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds