Wall clock time and date at job start Mon Mar 30 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46838 * 2 1 4 4 H 1.09004 * 109.47441 * 304.99760 * 3 2 1 5 5 O 1.45196 * 109.47329 * 65.00298 * 3 2 1 6 6 C 1.34228 * 117.00058 * 269.99650 * 5 3 2 7 7 O 1.20833 * 119.99787 * 0.02562 * 6 5 3 8 8 C 1.50697 * 120.00167 * 179.97438 * 6 5 3 9 9 H 1.08998 * 109.46862 * 60.00942 * 8 6 5 10 10 C 1.52997 * 109.47466 * 300.00387 * 8 6 5 11 11 C 1.50706 * 109.47178 * 180.02562 * 8 6 5 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 6 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 6 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 C 1.50706 * 109.46831 * 185.00296 * 3 2 1 20 20 C 1.38655 * 120.78671 * 279.71541 * 19 3 2 21 21 C 1.38203 * 119.15911 * 179.75931 * 20 19 3 22 22 N 1.31870 * 120.76749 * 0.52866 * 21 20 19 23 23 C 1.31877 * 121.72061 * 359.74664 * 22 21 20 24 24 C 1.38200 * 120.76593 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46876 * 59.99915 * 1 2 3 26 26 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46756 * 299.99943 * 1 2 3 28 28 H 1.08997 * 109.47050 * 240.00434 * 2 1 3 29 29 H 1.09001 * 109.47491 * 119.99738 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 8 6 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 8 6 32 32 H 1.09004 * 109.47261 * 179.97438 * 10 8 6 33 33 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.42205 * 0.02562 * 20 19 3 35 35 H 1.08005 * 119.61857 * 180.25523 * 21 20 19 36 36 H 1.08000 * 119.61124 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.41454 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6559 2.0917 1.2407 6 6 0.4727 2.7255 1.2560 7 8 -0.2193 2.7370 0.2655 8 6 0.0070 3.4216 2.5087 9 1 0.7239 4.1959 2.7820 10 6 -0.1038 2.4046 3.6463 11 6 -1.3412 4.0489 2.2633 12 1 -1.8136 3.9526 1.2969 13 6 -1.9718 4.7447 3.2727 14 7 -1.3968 4.8615 4.4497 15 14 -3.6432 5.5215 2.9687 16 1 -4.0701 5.2471 1.5731 17 1 -4.6355 4.9459 3.9116 18 1 -3.5530 6.9887 3.1797 19 6 3.5419 1.4443 -0.1239 20 6 4.3455 1.2101 0.9815 21 6 5.7190 1.2146 0.8286 22 7 6.2660 1.4482 -0.3484 23 6 5.5330 1.6802 -1.4199 24 6 4.1530 1.6860 -1.3447 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.8711 1.9505 3.8240 31 1 -0.8207 1.6304 3.3730 32 1 -0.4402 2.9082 4.5526 33 1 -1.8403 5.3514 5.1597 34 1 3.9036 1.0223 1.9489 35 1 6.3519 1.0289 1.6838 36 1 6.0168 1.8671 -2.3672 37 1 3.5583 1.8763 -2.2258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851083884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:23 Heat of formation + Delta-G solvation = -82.582377 kcal Electronic energy + Delta-G solvation = -19870.945629 eV Core-core repulsion = 16805.283866 eV Total energy + Delta-G solvation = -3065.661763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81034 -40.85421 -37.88078 -35.92168 -35.17747 -33.04420 -32.58315 -32.15284 -28.08230 -27.26660 -25.13732 -24.42779 -23.72776 -22.27442 -21.29720 -18.77250 -18.28650 -18.05446 -17.30555 -17.06225 -16.80567 -16.50510 -15.96724 -15.16006 -15.02705 -14.72360 -14.55790 -14.47476 -14.40132 -13.55987 -13.46056 -13.10786 -12.98358 -12.79329 -12.64371 -12.56800 -12.44312 -12.30740 -12.07124 -11.91577 -11.53565 -11.10736 -10.97134 -10.63792 -10.52851 -10.43746 -10.09589 -8.20664 -6.33538 0.12940 0.19774 1.39988 1.42176 1.48448 1.54523 1.88181 2.43056 2.83799 3.09749 3.35447 3.59770 3.77768 3.82625 4.05449 4.09210 4.18708 4.20111 4.44962 4.47779 4.67106 4.68099 4.76192 4.88994 4.89744 4.90775 4.92220 4.98624 5.06850 5.28185 5.30428 5.41425 5.55865 5.69931 5.73522 5.88765 6.10407 6.73594 6.98794 7.07958 7.35562 8.85978 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.004777 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.474741 B = 5860.291310 C = 6143.829348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.118 3.882 4 H 0.082 0.918 5 O -0.354 6.354 6 C 0.476 3.524 7 O -0.530 6.530 8 C 0.050 3.950 9 H 0.045 0.955 10 C -0.119 4.119 11 C -0.535 4.535 12 H 0.057 0.943 13 C 0.022 3.978 14 N -0.910 5.910 15 Si 0.962 3.038 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.053 4.053 20 C -0.154 4.154 21 C 0.093 3.907 22 N -0.505 5.505 23 C 0.095 3.905 24 C -0.163 4.163 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.267 0.733 34 H 0.142 0.858 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.941 -9.354 -7.869 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.063 3.937 4 H 0.100 0.900 5 O -0.272 6.272 6 C 0.321 3.679 7 O -0.419 6.419 8 C 0.031 3.969 9 H 0.063 0.937 10 C -0.177 4.177 11 C -0.572 4.572 12 H 0.076 0.924 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.787 3.213 16 H -0.200 1.200 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.062 4.062 20 C -0.173 4.173 21 C -0.063 4.063 22 N -0.215 5.215 23 C -0.061 4.061 24 C -0.183 4.183 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.198 0.802 36 H 0.203 0.797 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.636 -9.293 -8.082 16.943 hybrid contribution -2.010 0.648 0.047 2.112 sum 9.626 -8.645 -8.035 15.230 Atomic orbital electron populations 1.21799 0.95534 1.02014 1.01265 1.21899 0.96064 0.93509 1.04506 1.21636 0.90942 0.94827 0.86318 0.90021 1.86611 1.37731 1.63937 1.38875 1.24651 0.77708 0.74353 0.91190 1.90481 1.55554 1.58905 1.36942 1.18659 0.96638 0.94177 0.87421 0.93724 1.21541 0.99127 0.96872 1.00112 1.21278 1.02949 1.34171 0.98850 0.92431 1.25625 1.01378 0.96143 0.94616 1.69964 1.39706 1.41832 1.03317 0.85446 0.79452 0.78281 0.78141 1.20037 1.19844 1.20020 1.20130 0.93562 0.97380 0.95080 1.22186 0.95151 1.00119 0.99879 1.23158 0.92653 0.94687 0.95785 1.67733 1.41739 1.11917 1.00102 1.23199 0.90340 0.94545 0.98056 1.22233 0.96972 1.01007 0.98077 0.93063 0.90542 0.95409 0.87913 0.90188 0.93334 0.95192 0.90582 0.92322 0.84020 0.80250 0.79674 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 8.57 71.98 0.62 -3.87 16 2 C -0.12 -3.13 5.63 30.59 0.17 -2.96 16 3 C 0.12 3.55 2.49 29.85 0.07 3.62 16 4 H 0.08 2.65 7.06 -2.39 -0.02 2.63 16 5 O -0.35 -13.41 9.13 -51.40 -0.47 -13.88 16 6 C 0.48 21.71 5.71 71.23 0.41 22.12 16 7 O -0.53 -25.86 12.60 21.94 0.28 -25.59 16 8 C 0.05 2.54 2.74 -12.29 -0.03 2.51 16 9 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 10 C -0.12 -5.52 8.90 71.98 0.64 -4.88 16 11 C -0.53 -30.03 8.37 25.60 0.21 -29.82 16 12 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 13 C 0.02 1.21 5.30 84.65 0.45 1.66 16 14 N -0.91 -50.28 11.32 21.45 0.24 -50.04 16 15 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C -0.05 -1.37 5.01 -19.67 -0.10 -1.47 16 20 C -0.15 -3.73 9.46 22.36 0.21 -3.52 16 21 C 0.09 2.04 11.18 84.68 0.95 2.99 16 22 N -0.51 -11.79 10.36 -195.84 -2.03 -13.82 16 23 C 0.09 1.89 11.18 84.68 0.95 2.84 16 24 C -0.16 -3.46 9.78 22.36 0.22 -3.24 16 25 H 0.05 1.63 7.80 -2.39 -0.02 1.61 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.03 1.02 6.06 -2.39 -0.01 1.00 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.95 8.11 -2.39 -0.02 1.93 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 3.85 6.07 -2.38 -0.01 3.84 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.14 3.37 7.85 -2.91 -0.02 3.35 16 35 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -63.81 311.49 5.87 -57.94 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.06 Total: 13.77 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.77 Total: -14.02 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -1.79 Total: -63.86 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.19 Total: -39.47 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.81 5.87 -57.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851083884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.642 kcal (2) G-P(sol) polarization free energy of solvation -63.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds