Wall clock time and date at job start Mon Mar 30 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34516 * 125.78787 * 2 1 4 4 C 1.41381 * 106.84168 * 179.75180 * 3 2 1 5 5 C 1.34510 * 106.84039 * 0.36942 * 4 3 2 6 6 C 1.50696 * 125.79227 * 179.89222 * 5 4 3 7 7 H 1.09008 * 109.46863 * 359.71776 * 6 5 4 8 8 C 1.52997 * 109.47296 * 239.71928 * 6 5 4 9 9 C 1.50698 * 109.47370 * 119.71354 * 6 5 4 10 10 O 1.21278 * 120.00094 * 34.54063 * 9 6 5 11 11 N 1.34777 * 120.00491 * 214.53403 * 9 6 5 12 12 C 1.47071 * 136.05250 * 354.98842 * 11 9 6 13 13 C 1.53504 * 87.98543 * 152.84154 * 12 11 9 14 14 C 1.50697 * 114.20413 * 139.65302 * 13 12 11 15 15 H 1.08002 * 120.00712 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99461 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00310 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47219 * 90.00371 * 18 16 14 20 20 H 1.48506 * 109.47157 * 210.00156 * 18 16 14 21 21 H 1.48501 * 109.47262 * 329.99866 * 18 16 14 22 22 C 1.47064 * 136.06162 * 174.93239 * 11 9 6 23 23 O 1.34303 * 125.79326 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47314 * 299.99776 * 1 2 3 26 26 H 1.08997 * 109.47512 * 60.00264 * 1 2 3 27 27 H 1.07999 * 126.58021 * 0.02562 * 3 2 1 28 28 H 1.08003 * 126.58164 * 180.24390 * 4 3 2 29 29 H 1.09005 * 109.47339 * 300.77009 * 8 6 5 30 30 H 1.08997 * 109.47512 * 60.76976 * 8 6 5 31 31 H 1.09004 * 109.47556 * 180.76846 * 8 6 5 32 32 H 1.09005 * 113.46446 * 267.61638 * 12 11 9 33 33 H 1.08999 * 113.47248 * 38.05821 * 12 11 9 34 34 H 1.08994 * 114.20287 * 272.47626 * 13 12 11 35 35 H 0.97003 * 120.00054 * 180.02562 * 17 16 14 36 36 H 1.08999 * 113.46938 * 321.93970 * 22 11 9 37 37 H 1.09001 * 113.46896 * 92.37860 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6322 0.0059 5 6 3.5814 -0.7120 0.0008 6 6 4.7706 -1.6377 0.0019 7 1 5.6886 -1.0498 0.0024 8 6 4.7309 -2.5204 -1.2472 9 6 4.7299 -2.5065 1.2325 10 8 3.6645 -2.8758 1.6791 11 7 5.8773 -2.8732 1.8369 12 6 7.3142 -2.7170 1.5649 13 6 7.5552 -2.8073 3.0783 14 6 8.7657 -3.6180 3.4638 15 1 9.3759 -4.0747 2.6987 16 6 9.0941 -3.7766 4.7935 17 7 8.3507 -3.2209 5.7252 18 14 10.5941 -4.7821 5.2715 19 1 11.7831 -3.8952 5.3404 20 1 10.3671 -5.4096 6.5982 21 1 10.8244 -5.8409 4.2561 22 6 6.2437 -3.6046 3.0590 23 8 2.2925 -1.0894 0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9665 2.1204 0.0004 28 1 4.5212 1.2435 0.0111 29 1 3.8066 -3.0981 -1.2547 30 1 4.7743 -1.8927 -2.1372 31 1 5.5837 -3.1993 -1.2396 32 1 7.7433 -3.5491 1.0067 33 1 7.5729 -1.7466 1.1413 34 1 7.4899 -1.8520 3.5989 35 1 8.5820 -3.3322 6.6607 36 1 5.5922 -3.3890 3.9058 37 1 6.3876 -4.6732 2.8987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:53 Heat of formation + Delta-G solvation = -12.615848 kcal Electronic energy + Delta-G solvation = -19502.983789 eV Core-core repulsion = 16440.356002 eV Total energy + Delta-G solvation = -3062.627787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.59018 -41.18161 -38.92329 -35.30511 -34.63055 -34.08288 -32.12475 -30.77605 -27.48383 -27.26051 -26.70779 -24.60537 -22.74368 -22.21989 -21.09347 -19.79553 -18.75477 -18.00837 -17.76480 -17.12841 -16.66518 -16.23388 -16.13504 -15.31159 -15.26553 -14.55745 -14.20870 -14.11834 -13.97801 -13.73492 -13.69959 -13.37300 -13.24172 -13.14547 -12.95903 -12.74975 -12.70124 -12.50045 -12.46340 -12.12977 -11.49375 -11.03857 -10.86219 -10.63860 -10.56564 -9.60050 -9.23228 -8.16662 -6.28890 0.68772 1.47324 1.49153 1.50354 1.59291 1.62618 1.97258 2.08380 2.46124 3.13674 3.44645 3.51097 3.90536 4.01016 4.13189 4.18072 4.18903 4.43937 4.52578 4.55085 4.67768 4.70309 4.70968 4.74145 4.80917 4.83241 4.87778 4.99147 5.00664 5.02867 5.12820 5.27641 5.58817 5.65137 5.81523 6.22268 6.26220 6.82618 6.89108 7.09312 7.42263 8.93586 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040767 B = 0.003950 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.657238 B = 7087.448455 C = 7240.507139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.033 4.033 3 C -0.223 4.223 4 C -0.204 4.204 5 C -0.024 4.024 6 C -0.015 4.015 7 H 0.143 0.857 8 C -0.131 4.131 9 C 0.527 3.473 10 O -0.595 6.595 11 N -0.643 5.643 12 C 0.112 3.888 13 C 0.022 3.978 14 C -0.524 4.524 15 H 0.077 0.923 16 C 0.014 3.986 17 N -0.925 5.925 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.260 1.260 22 C 0.104 3.896 23 O -0.185 6.185 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.174 0.826 28 H 0.170 0.830 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.025 0.975 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 7.270 -14.999 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.242 4.242 4 C -0.223 4.223 5 C -0.074 4.074 6 C -0.036 4.036 7 H 0.160 0.840 8 C -0.188 4.188 9 C 0.318 3.682 10 O -0.477 6.477 11 N -0.376 5.376 12 C -0.009 4.009 13 C 0.003 3.997 14 C -0.562 4.562 15 H 0.095 0.905 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.218 1.218 21 H -0.184 1.184 22 C -0.019 4.019 23 O -0.081 6.081 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.192 0.808 28 H 0.188 0.812 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.269 6.853 -14.691 18.198 hybrid contribution 0.523 -0.520 1.103 1.327 sum -7.746 6.333 -13.588 16.874 Atomic orbital electron populations 1.20471 0.82728 1.04354 1.05221 1.23370 0.95859 0.84083 1.05010 1.21870 0.92115 1.00423 1.09778 1.21933 0.99746 0.93001 1.07627 1.21943 0.82888 0.94353 1.08252 1.19873 0.94922 0.95053 0.93761 0.83966 1.21709 1.02916 0.99471 0.94751 1.20768 0.81784 0.80866 0.84800 1.90649 1.30811 1.59012 1.67235 1.50087 1.06738 1.54595 1.26221 1.23368 0.75959 1.02730 0.98857 1.20245 0.91861 0.95581 0.92043 1.21296 1.10455 1.32008 0.92432 0.90471 1.25889 0.99388 0.96470 0.96841 1.70103 1.40274 1.45194 1.00807 0.85495 0.79361 0.79026 0.77419 1.19826 1.21829 1.18423 1.23392 0.96822 0.97205 0.84471 1.84031 1.16813 1.36174 1.71122 0.91082 0.88399 0.87123 0.80821 0.81228 0.93480 0.88282 0.89968 0.88374 0.88819 0.94332 0.92845 0.95603 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.42 71.23 0.74 -0.52 16 2 C -0.03 -0.90 7.32 24.83 0.18 -0.72 16 3 C -0.22 -5.51 10.81 22.19 0.24 -5.27 16 4 C -0.20 -5.50 10.78 22.19 0.24 -5.26 16 5 C -0.02 -0.77 5.56 24.83 0.14 -0.63 16 6 C -0.02 -0.45 3.02 -12.29 -0.04 -0.49 16 7 H 0.14 3.35 7.58 -2.38 -0.02 3.33 16 8 C -0.13 -3.12 9.16 71.98 0.66 -2.46 16 9 C 0.53 21.40 7.07 87.66 0.62 22.02 16 10 O -0.60 -29.66 16.77 7.39 0.12 -29.53 16 11 N -0.64 -26.21 3.69 -858.22 -3.17 -29.37 16 12 C 0.11 3.94 7.83 83.18 0.65 4.59 16 13 C 0.02 1.03 3.79 -11.20 -0.04 0.99 16 14 C -0.52 -26.07 8.82 25.60 0.23 -25.84 16 15 H 0.08 3.57 7.81 -2.91 -0.02 3.54 16 16 C 0.01 0.72 5.46 84.66 0.46 1.19 16 17 N -0.93 -52.62 13.26 21.45 0.28 -52.34 16 18 Si 0.96 40.90 29.54 68.60 2.03 42.93 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 C 0.10 4.92 8.18 83.18 0.68 5.61 16 23 O -0.18 -6.43 10.07 7.91 0.08 -6.35 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 28 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.10 3.10 8.10 -2.38 -0.02 3.08 16 33 H 0.09 2.66 7.85 -2.39 -0.02 2.64 16 34 H 0.04 2.02 8.11 -2.39 -0.02 2.00 16 35 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 3.36 8.10 -2.39 -0.02 3.34 16 Total: -1.00 -70.68 321.81 5.16 -65.52 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.05 Total: 15.94 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 4.76 Total: -6.79 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.88 Total: -81.71 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: 0.20 Total: -35.89 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -70.68 5.16 -65.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.905 kcal (2) G-P(sol) polarization free energy of solvation -70.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds