Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34509 * 125.79028 * 2 1 4 4 C 1.41378 * 106.84538 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83877 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.79261 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46537 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.46974 * 119.99972 * 6 5 4 9 9 C 1.50694 * 109.47438 * 240.00194 * 6 5 4 10 10 O 1.21284 * 120.00100 * 0.02562 * 9 6 5 11 11 N 1.34770 * 120.00190 * 179.97438 * 9 6 5 12 12 C 1.47586 * 134.49328 * 179.97438 * 11 9 6 13 13 C 1.53950 * 86.11354 * 155.35990 * 12 11 9 14 14 C 1.50706 * 113.73627 * 137.95493 * 13 12 11 15 15 H 1.07995 * 120.00167 * 1.64697 * 14 13 12 16 16 C 1.37879 * 119.99394 * 181.92396 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 C 1.47813 * 134.45830 * 359.86765 * 11 9 6 23 23 O 1.34303 * 125.78888 * 180.35434 * 2 1 3 24 24 H 1.08997 * 109.47179 * 89.99971 * 1 2 3 25 25 H 1.09004 * 109.46642 * 209.99464 * 1 2 3 26 26 H 1.08998 * 109.47307 * 329.99092 * 1 2 3 27 27 H 1.08009 * 126.57654 * 0.02562 * 3 2 1 28 28 H 1.07999 * 126.58589 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.46831 * 60.00344 * 8 6 5 30 30 H 1.08999 * 109.46644 * 180.02562 * 8 6 5 31 31 H 1.08998 * 109.46873 * 300.00423 * 8 6 5 32 32 H 1.09008 * 113.76654 * 41.06222 * 12 11 9 33 33 H 1.08991 * 113.77014 * 269.66271 * 12 11 9 34 34 H 1.09000 * 113.74485 * 269.15566 * 13 12 11 35 35 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 36 36 H 1.09002 * 113.76703 * 90.37825 * 22 11 9 37 37 H 1.08998 * 113.83277 * 318.91803 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6379 -0.0030 7 1 5.6885 -1.0500 -0.0027 8 6 4.7308 -2.5212 1.2457 9 6 4.7299 -2.5061 -1.2339 10 8 3.8246 -2.3849 -2.0319 11 7 5.7000 -3.4167 -1.4487 12 6 5.9739 -4.4056 -2.5095 13 6 7.4488 -4.3010 -2.0810 14 6 8.1597 -5.6287 -2.0247 15 1 7.6372 -6.5331 -2.2992 16 6 9.4755 -5.6892 -1.6173 17 7 10.1101 -4.5886 -1.2773 18 14 10.3569 -7.3348 -1.5482 19 1 11.0088 -7.6026 -2.8553 20 1 11.3873 -7.2999 -0.4792 21 1 9.3756 -8.4100 -1.2548 22 6 6.9179 -3.8241 -0.7169 23 8 2.2924 -1.0894 -0.0067 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5140 27 1 1.9665 2.1204 0.0004 28 1 4.5212 1.2433 -0.0004 29 1 3.8128 -3.1089 1.2459 30 1 5.5912 -3.1904 1.2449 31 1 4.7603 -1.8931 2.1361 32 1 5.7815 -4.0345 -3.5163 33 1 5.5305 -5.3837 -2.3234 34 1 8.0107 -3.5408 -2.6236 35 1 11.0356 -4.6313 -0.9904 36 1 6.7522 -4.6313 -0.0033 37 1 7.4779 -2.9897 -0.2947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = 2.067510 kcal Electronic energy + Delta-G solvation = -19566.058260 eV Core-core repulsion = 16504.067191 eV Total energy + Delta-G solvation = -3061.991069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.46017 -39.46437 -37.05046 -34.06914 -33.01759 -32.67971 -31.15151 -28.91223 -26.43996 -25.35362 -25.14182 -23.39422 -21.63906 -20.56882 -19.73756 -18.28735 -16.82907 -16.49671 -16.37398 -15.85324 -15.05789 -14.87645 -14.44584 -14.16491 -13.71191 -13.18671 -13.06570 -12.96659 -12.66446 -12.64647 -12.33413 -12.03410 -11.91125 -11.70915 -11.45115 -11.32513 -11.18233 -10.96720 -10.80349 -10.41820 -9.73511 -9.59665 -9.30639 -8.95339 -8.61190 -8.12873 -7.87275 -6.20672 -4.26168 1.85158 2.70749 3.01448 3.13959 3.22437 3.30128 3.32602 3.59863 4.31585 4.59238 4.85998 4.93592 5.10351 5.10884 5.17512 5.24021 5.37370 5.41051 5.60997 5.73290 5.80892 5.93536 6.02355 6.07193 6.17459 6.19649 6.24039 6.31340 6.38435 6.53877 6.61495 6.67067 6.79528 7.35434 7.52660 7.77168 8.14106 8.48030 8.72647 8.77258 9.40860 10.88985 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048955 B = 0.003929 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.814315 B = 7124.093350 C = 7292.336569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.020 4.020 3 C -0.214 4.214 4 C -0.212 4.212 5 C 0.025 3.975 6 C -0.027 4.027 7 H 0.122 0.878 8 C -0.144 4.144 9 C 0.528 3.472 10 O -0.555 6.555 11 N -0.638 5.638 12 C 0.104 3.896 13 C 0.033 3.967 14 C -0.520 4.520 15 H 0.063 0.937 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.104 3.896 23 O -0.158 6.158 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 8.016 5.928 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.233 4.233 4 C -0.231 4.231 5 C -0.026 4.026 6 C -0.048 4.048 7 H 0.139 0.861 8 C -0.202 4.202 9 C 0.316 3.684 10 O -0.434 6.434 11 N -0.372 5.372 12 C -0.018 4.018 13 C 0.014 3.986 14 C -0.558 4.558 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.723 3.277 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.018 4.018 23 O -0.053 6.053 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.996 7.983 5.609 15.463 hybrid contribution 0.719 -0.531 0.129 0.903 sum -11.277 7.452 5.738 14.684 Atomic orbital electron populations 1.20251 0.85472 1.03598 1.03380 1.22386 0.93974 0.84415 1.06311 1.21449 0.92649 0.99076 1.10100 1.21482 0.98252 0.93507 1.09838 1.21649 0.82715 0.93520 1.04720 1.19841 0.93829 0.95272 0.95849 0.86053 1.21815 1.03694 0.99564 0.95101 1.19955 0.80763 0.81120 0.86573 1.90667 1.34916 1.70413 1.47420 1.50480 1.24453 1.34854 1.27424 1.23495 0.97619 0.90016 0.90637 1.20504 0.89253 0.97918 0.90893 1.20978 0.96507 0.92328 1.45981 0.91862 1.25014 0.97279 0.96648 0.94593 1.69942 1.11451 1.27022 1.43934 0.86545 0.79465 0.83869 0.77867 1.20507 1.21149 1.19719 1.23787 0.80730 0.97604 0.99710 1.83976 1.16096 1.34635 1.70621 0.90258 0.90767 0.89644 0.83781 0.83589 0.91911 0.90310 0.91344 0.92085 0.90785 0.91801 0.92632 0.90511 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 36.01 0.38 -0.30 16 2 C -0.02 -0.29 7.32 -35.63 -0.26 -0.55 16 3 C -0.21 -2.89 10.81 -39.71 -0.43 -3.32 16 4 C -0.21 -3.12 10.78 -39.70 -0.43 -3.55 16 5 C 0.03 0.42 5.21 -35.62 -0.19 0.23 16 6 C -0.03 -0.43 2.96 -92.92 -0.28 -0.71 16 7 H 0.12 1.74 8.10 -51.93 -0.42 1.31 16 8 C -0.14 -2.01 9.05 37.16 0.34 -1.68 16 9 C 0.53 10.68 7.38 -10.99 -0.08 10.60 16 10 O -0.55 -13.14 16.52 -1.65 -0.03 -13.17 16 11 N -0.64 -12.96 3.57 -178.21 -0.64 -13.59 16 12 C 0.10 2.17 8.39 -2.96 -0.02 2.15 16 13 C 0.03 0.77 3.60 -90.84 -0.33 0.44 16 14 C -0.52 -13.01 8.77 -34.44 -0.30 -13.31 16 15 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 16 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -23.57 13.29 55.43 0.74 -22.84 16 18 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 22 C 0.10 2.10 6.46 -2.83 -0.02 2.09 16 23 O -0.16 -2.74 10.34 -1.51 -0.02 -2.76 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 28 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.10 6.14 -51.93 -0.32 0.78 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 34 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.08 1.53 7.92 -51.93 -0.41 1.12 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -30.35 318.79 -7.22 -37.57 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.34 Total: 1.48 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.72 Total: -6.27 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.10 Total: -36.43 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.04 Total: -15.93 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.35 -7.22 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.638 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds