Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34509 * 125.79028 * 2 1 4 4 C 1.41378 * 106.84538 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83877 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.79261 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46537 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.46974 * 119.99972 * 6 5 4 9 9 C 1.50694 * 109.47438 * 240.00194 * 6 5 4 10 10 O 1.21284 * 120.00100 * 0.02562 * 9 6 5 11 11 N 1.34770 * 120.00190 * 179.97438 * 9 6 5 12 12 C 1.47586 * 134.49328 * 179.97438 * 11 9 6 13 13 C 1.53950 * 86.11354 * 155.35990 * 12 11 9 14 14 C 1.50706 * 113.73627 * 137.95493 * 13 12 11 15 15 H 1.07995 * 120.00167 * 1.64697 * 14 13 12 16 16 C 1.37879 * 119.99394 * 181.92396 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 C 1.47813 * 134.45830 * 359.86765 * 11 9 6 23 23 O 1.34303 * 125.78888 * 180.35434 * 2 1 3 24 24 H 1.08997 * 109.47179 * 89.99971 * 1 2 3 25 25 H 1.09004 * 109.46642 * 209.99464 * 1 2 3 26 26 H 1.08998 * 109.47307 * 329.99092 * 1 2 3 27 27 H 1.08009 * 126.57654 * 0.02562 * 3 2 1 28 28 H 1.07999 * 126.58589 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.46831 * 60.00344 * 8 6 5 30 30 H 1.08999 * 109.46644 * 180.02562 * 8 6 5 31 31 H 1.08998 * 109.46873 * 300.00423 * 8 6 5 32 32 H 1.09008 * 113.76654 * 41.06222 * 12 11 9 33 33 H 1.08991 * 113.77014 * 269.66271 * 12 11 9 34 34 H 1.09000 * 113.74485 * 269.15566 * 13 12 11 35 35 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 36 36 H 1.09002 * 113.76703 * 90.37825 * 22 11 9 37 37 H 1.08998 * 113.83277 * 318.91803 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 6 4.7706 -1.6379 -0.0030 7 1 5.6885 -1.0500 -0.0027 8 6 4.7308 -2.5212 1.2457 9 6 4.7299 -2.5061 -1.2339 10 8 3.8246 -2.3849 -2.0319 11 7 5.7000 -3.4167 -1.4487 12 6 5.9739 -4.4056 -2.5095 13 6 7.4488 -4.3010 -2.0810 14 6 8.1597 -5.6287 -2.0247 15 1 7.6372 -6.5331 -2.2992 16 6 9.4755 -5.6892 -1.6173 17 7 10.1101 -4.5886 -1.2773 18 14 10.3569 -7.3348 -1.5482 19 1 11.0088 -7.6026 -2.8553 20 1 11.3873 -7.2999 -0.4792 21 1 9.3756 -8.4100 -1.2548 22 6 6.9179 -3.8241 -0.7169 23 8 2.2924 -1.0894 -0.0067 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5140 27 1 1.9665 2.1204 0.0004 28 1 4.5212 1.2433 -0.0004 29 1 3.8128 -3.1089 1.2459 30 1 5.5912 -3.1904 1.2449 31 1 4.7603 -1.8931 2.1361 32 1 5.7815 -4.0345 -3.5163 33 1 5.5305 -5.3837 -2.3234 34 1 8.0107 -3.5408 -2.6236 35 1 11.0356 -4.6313 -0.9904 36 1 6.7522 -4.6313 -0.0033 37 1 7.4779 -2.9897 -0.2947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = -14.869409 kcal Electronic energy + Delta-G solvation = -19566.792700 eV Core-core repulsion = 16504.067191 eV Total energy + Delta-G solvation = -3062.725509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.57982 -41.10302 -38.74213 -35.37367 -34.58413 -34.08466 -32.17882 -30.59216 -27.47416 -27.14263 -26.82131 -24.69967 -22.75139 -22.09232 -21.05124 -19.84363 -18.67421 -17.95649 -17.78007 -17.03951 -16.65140 -16.41588 -16.09108 -15.49901 -15.07588 -14.44763 -14.24281 -14.00434 -13.95529 -13.73132 -13.70993 -13.40755 -13.34008 -13.09555 -12.92302 -12.76097 -12.67567 -12.54333 -12.40855 -12.17745 -11.37379 -11.13160 -10.83545 -10.68581 -10.49789 -9.57281 -9.22241 -8.15082 -6.25777 0.72150 1.48055 1.50865 1.55397 1.59479 1.62168 1.94849 2.07374 2.47551 3.16159 3.42842 3.50096 3.91118 3.98773 4.13397 4.18054 4.28083 4.43897 4.52997 4.56457 4.64536 4.68137 4.69566 4.71257 4.82529 4.83975 4.90292 4.96120 5.03632 5.06803 5.14716 5.28627 5.61325 5.66540 5.83167 6.23716 6.25842 6.81199 6.85027 7.10200 7.44013 8.94543 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048955 B = 0.003929 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.814315 B = 7124.093350 C = 7292.336569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.032 4.032 3 C -0.221 4.221 4 C -0.210 4.210 5 C -0.011 4.011 6 C -0.020 4.020 7 H 0.140 0.860 8 C -0.137 4.137 9 C 0.523 3.477 10 O -0.594 6.594 11 N -0.638 5.638 12 C 0.106 3.894 13 C 0.023 3.977 14 C -0.532 4.532 15 H 0.064 0.936 16 C 0.024 3.976 17 N -0.915 5.915 18 Si 0.955 3.045 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.121 3.879 23 O -0.188 6.188 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.008 8.545 7.051 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.240 4.240 4 C -0.229 4.229 5 C -0.061 4.061 6 C -0.041 4.041 7 H 0.158 0.842 8 C -0.194 4.194 9 C 0.313 3.687 10 O -0.476 6.476 11 N -0.371 5.371 12 C -0.016 4.016 13 C 0.004 3.996 14 C -0.570 4.570 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.553 5.553 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.001 4.001 23 O -0.085 6.085 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.134 0.866 27 H 0.192 0.808 28 H 0.184 0.816 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.557 8.510 6.741 16.599 hybrid contribution 0.829 -0.640 -0.278 1.083 sum -11.728 7.870 6.462 15.532 Atomic orbital electron populations 1.20469 0.82594 1.05313 1.04282 1.23332 0.95788 0.83959 1.05157 1.21867 0.92008 1.00429 1.09662 1.21886 0.99732 0.93092 1.08179 1.21810 0.82717 0.94313 1.07286 1.19863 0.94906 0.95054 0.94289 0.84197 1.21787 1.03003 0.99495 0.95113 1.20730 0.79722 0.80856 0.87360 1.90636 1.36338 1.71463 1.49125 1.50470 1.24646 1.34856 1.27096 1.23411 0.96383 0.90797 0.90988 1.20418 0.89894 0.96692 0.92635 1.21254 0.96990 0.93052 1.45682 0.91820 1.25691 0.97974 0.99569 0.94397 1.70034 1.11714 1.28715 1.44866 0.85595 0.78345 0.80321 0.77615 1.20570 1.20951 1.19057 1.23567 0.80275 0.97900 0.98314 1.83951 1.16774 1.36397 1.71373 0.89616 0.90381 0.86610 0.80801 0.81618 0.93018 0.90370 0.88758 0.92262 0.89940 0.94499 0.92604 0.89786 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.42 71.24 0.74 -0.45 16 2 C -0.03 -0.87 7.32 24.83 0.18 -0.69 16 3 C -0.22 -5.50 10.81 22.19 0.24 -5.26 16 4 C -0.21 -5.85 10.78 22.19 0.24 -5.61 16 5 C -0.01 -0.36 5.21 24.83 0.13 -0.23 16 6 C -0.02 -0.64 2.96 -12.29 -0.04 -0.68 16 7 H 0.14 3.80 8.10 -2.39 -0.02 3.78 16 8 C -0.14 -3.64 9.05 71.98 0.65 -2.99 16 9 C 0.52 21.18 7.38 87.66 0.65 21.83 16 10 O -0.59 -28.53 16.52 3.85 0.06 -28.47 16 11 N -0.64 -25.82 3.57 -836.11 -2.99 -28.81 16 12 C 0.11 4.47 8.39 86.49 0.73 5.20 16 13 C 0.02 1.06 3.60 -10.87 -0.04 1.02 16 14 C -0.53 -26.56 8.77 25.60 0.22 -26.33 16 15 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 16 C 0.02 1.23 5.46 84.66 0.46 1.69 16 17 N -0.92 -48.63 13.29 21.45 0.28 -48.35 16 18 Si 0.96 40.19 29.54 68.60 2.03 42.21 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 C 0.12 4.86 6.46 86.44 0.56 5.42 16 23 O -0.19 -6.49 10.34 4.35 0.04 -6.44 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.06 6.14 -2.39 -0.01 2.05 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.08 3.32 8.09 -2.39 -0.02 3.30 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 36 H 0.08 3.27 7.92 -2.39 -0.02 3.25 16 37 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -65.10 318.79 5.21 -59.89 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.05 Total: 17.06 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.73 Total: -7.09 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.70 Total: -77.15 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: 0.11 Total: -34.91 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -65.10 5.21 -59.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.017 kcal (2) G-P(sol) polarization free energy of solvation -65.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds