Wall clock time and date at job start Mon Mar 30 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47466 * 2 1 4 4 O 1.45199 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.34645 * 117.00175 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99762 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99746 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99681 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47362 * 179.97438 * 8 7 5 10 10 C 1.38632 * 119.74855 * 269.73233 * 9 8 7 11 11 C 1.37622 * 120.24185 * 179.71996 * 10 9 8 12 12 C 1.40711 * 119.74669 * 0.56508 * 11 10 9 13 13 C 1.41400 * 120.24519 * 179.68031 * 12 11 10 14 14 H 1.07993 * 120.00417 * 204.40825 * 13 12 11 15 15 C 1.39949 * 119.99722 * 24.41101 * 13 12 11 16 16 N 1.30829 * 120.00062 * 17.84366 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 197.84420 * 15 13 12 18 18 H 1.48498 * 109.46821 * 90.00230 * 17 15 13 19 19 H 1.48501 * 109.47257 * 209.99803 * 17 15 13 20 20 H 1.48498 * 109.47318 * 330.00157 * 17 15 13 21 21 C 1.40712 * 119.51307 * 359.70755 * 12 11 10 22 22 C 1.37615 * 119.74605 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46674 * 300.00188 * 1 2 3 25 25 H 1.08998 * 109.46957 * 60.00150 * 1 2 3 26 26 H 1.09000 * 109.47184 * 239.99814 * 2 1 3 27 27 H 1.09002 * 109.47444 * 119.99805 * 2 1 3 28 28 H 1.09000 * 109.47072 * 59.99745 * 3 2 1 29 29 H 1.09002 * 109.47345 * 300.00087 * 3 2 1 30 30 H 0.96996 * 120.00336 * 359.97438 * 7 5 4 31 31 H 1.09007 * 109.47068 * 59.99799 * 8 7 5 32 32 H 1.08996 * 109.47220 * 300.00144 * 8 7 5 33 33 H 1.08000 * 119.87692 * 359.96552 * 10 9 8 34 34 H 1.08002 * 120.12182 * 180.27799 * 11 10 9 35 35 H 0.96994 * 119.99970 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.12698 * 179.97438 * 21 12 11 37 37 H 1.08000 * 119.87918 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4921 1.4424 -0.0006 5 6 4.1034 2.6421 -0.0012 6 8 3.4416 3.6611 -0.0017 7 7 5.4493 2.7125 -0.0013 8 6 6.1144 4.0178 -0.0014 9 6 7.6084 3.8204 -0.0008 10 6 8.2907 3.7362 1.2030 11 6 9.6542 3.5502 1.2155 12 6 10.3573 3.4575 0.0001 13 6 11.7592 3.2731 0.0006 14 1 12.3453 3.5857 -0.8510 15 6 12.3873 2.6856 1.1046 16 7 11.6845 1.9985 1.9680 17 14 14.2292 2.8826 1.3455 18 1 14.4953 4.0987 2.1550 19 1 14.7664 1.6912 2.0507 20 1 14.8902 3.0144 0.0223 21 6 9.6551 3.5500 -1.2157 22 6 8.2907 3.7294 -1.2043 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 5.9775 1.8990 -0.0005 31 1 5.8215 4.5749 0.8886 32 1 5.8215 4.5748 -0.8913 33 1 7.7496 3.8128 2.1346 34 1 10.1832 3.4804 2.1545 35 1 12.1199 1.5910 2.7330 36 1 10.1848 3.4806 -2.1543 37 1 7.7495 3.8004 -2.1362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859201263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:56 Heat of formation + Delta-G solvation = -86.211629 kcal Electronic energy + Delta-G solvation = -18605.034176 eV Core-core repulsion = 15539.215036 eV Total energy + Delta-G solvation = -3065.819139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14737 -37.91091 -36.68360 -34.73827 -33.96245 -33.43330 -30.38898 -29.38754 -27.39325 -26.31759 -23.78461 -21.75457 -21.13703 -21.03225 -20.15473 -18.42161 -17.41792 -16.63998 -16.59257 -15.45847 -14.99653 -14.81873 -14.30200 -13.98024 -13.94487 -13.50107 -12.99804 -12.66836 -12.51271 -12.36615 -12.08308 -12.03796 -11.70557 -11.29996 -11.29463 -11.18766 -11.07338 -10.75097 -10.49026 -10.43148 -10.33819 -9.74264 -9.50927 -9.26847 -8.76010 -7.60365 -7.49080 -6.89752 -4.49522 2.24733 2.75808 2.96615 3.01082 3.04011 3.11897 3.14132 3.83558 4.36202 4.58672 4.70999 4.79262 5.09899 5.25586 5.34499 5.41236 5.57187 5.70035 5.73842 5.84233 5.86214 5.92697 6.17902 6.22902 6.31735 6.55775 6.76662 6.84712 6.95103 7.15573 7.23753 7.48630 7.66328 7.87040 7.93167 7.98526 8.16588 8.51106 8.64842 8.75891 8.83687 10.04080 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038525 B = 0.003203 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.626331 B = 8738.557877 C = 9080.653222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.086 3.914 4 O -0.376 6.376 5 C 0.640 3.360 6 O -0.586 6.586 7 N -0.697 5.697 8 C 0.201 3.799 9 C -0.249 4.249 10 C -0.078 4.078 11 C -0.170 4.170 12 C 0.118 3.882 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.786 5.786 17 Si 0.911 3.089 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.230 4.230 22 C -0.066 4.066 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.407 0.593 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.283 0.717 36 H 0.094 0.906 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 -3.415 -1.183 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.011 3.989 4 O -0.290 6.290 5 C 0.392 3.608 6 O -0.477 6.477 7 N -0.355 5.355 8 C 0.081 3.919 9 C -0.251 4.251 10 C -0.097 4.097 11 C -0.189 4.189 12 C 0.115 3.885 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.735 3.265 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.250 4.250 22 C -0.085 4.085 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.242 0.758 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.193 -3.083 -0.969 12.614 hybrid contribution 1.009 -0.333 0.191 1.080 sum -11.184 -3.416 -0.778 11.719 Atomic orbital electron populations 1.21678 0.94217 1.02390 1.02325 1.21533 0.95975 0.95031 1.03769 1.22950 0.75403 0.97962 1.02539 1.86240 1.23524 1.31929 1.87341 1.18347 0.83954 0.81755 0.76717 1.90946 1.64921 1.34912 1.56876 1.45500 1.01984 1.11798 1.76229 1.19986 0.89502 0.81385 1.01006 1.18932 0.91848 1.20365 0.93957 1.20571 0.94802 0.99161 0.95191 1.21316 0.92799 1.06039 0.98795 1.17688 0.93173 0.86705 0.90961 1.19691 0.92503 1.34400 1.01927 0.90175 1.25971 1.01120 0.92553 0.94754 1.69819 1.38531 1.21972 1.10687 0.86269 0.81840 0.78778 0.79643 1.19141 1.20215 1.18513 1.20977 0.93341 1.13560 0.97088 1.20419 0.94340 0.98463 0.95297 0.91750 0.92316 0.92320 0.90794 0.90775 0.91427 0.91444 0.75760 0.92086 0.92128 0.89279 0.86307 0.90629 0.88808 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 2 C -0.13 -1.12 6.31 -26.73 -0.17 -1.29 16 3 C 0.09 1.04 5.47 37.16 0.20 1.24 16 4 O -0.38 -5.72 10.27 -40.34 -0.41 -6.14 16 5 C 0.64 11.24 8.75 54.05 0.47 11.71 16 6 O -0.59 -11.68 16.13 -19.27 -0.31 -11.99 16 7 N -0.70 -11.97 5.55 -66.47 -0.37 -12.34 16 8 C 0.20 3.66 5.79 -5.19 -0.03 3.63 16 9 C -0.25 -5.12 5.27 -104.33 -0.55 -5.67 16 10 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 11 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 12 C 0.12 2.99 5.57 -106.83 -0.60 2.40 16 13 C -0.46 -11.60 9.05 -37.74 -0.34 -11.94 16 14 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 15 C 0.07 1.80 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -19.45 10.95 55.55 0.61 -18.84 16 17 Si 0.91 17.92 29.60 -169.99 -5.03 12.89 16 18 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 22 C -0.07 -1.40 9.67 -39.66 -0.38 -1.79 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.41 6.69 8.57 -40.82 -0.35 6.34 16 31 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.06 1.08 8.08 -51.93 -0.42 0.67 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 35 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 36 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -27.54 321.18 -8.18 -35.72 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.29 Total: 8.94 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.22 Total: -13.07 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.24 Total: -31.18 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.73 Total: -18.13 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.54 -8.18 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859201263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.489 kcal (2) G-P(sol) polarization free energy of solvation -27.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds