Wall clock time and date at job start Mon Mar 30 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47466 * 2 1 4 4 O 1.45199 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.34645 * 117.00175 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99762 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99746 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99681 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47362 * 179.97438 * 8 7 5 10 10 C 1.38632 * 119.74855 * 269.73233 * 9 8 7 11 11 C 1.37622 * 120.24185 * 179.71996 * 10 9 8 12 12 C 1.40711 * 119.74669 * 0.56508 * 11 10 9 13 13 C 1.41400 * 120.24519 * 179.68031 * 12 11 10 14 14 H 1.07993 * 120.00417 * 204.40825 * 13 12 11 15 15 C 1.39949 * 119.99722 * 24.41101 * 13 12 11 16 16 N 1.30829 * 120.00062 * 17.84366 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 197.84420 * 15 13 12 18 18 H 1.48498 * 109.46821 * 90.00230 * 17 15 13 19 19 H 1.48501 * 109.47257 * 209.99803 * 17 15 13 20 20 H 1.48498 * 109.47318 * 330.00157 * 17 15 13 21 21 C 1.40712 * 119.51307 * 359.70755 * 12 11 10 22 22 C 1.37615 * 119.74605 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.46824 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46674 * 300.00188 * 1 2 3 25 25 H 1.08998 * 109.46957 * 60.00150 * 1 2 3 26 26 H 1.09000 * 109.47184 * 239.99814 * 2 1 3 27 27 H 1.09002 * 109.47444 * 119.99805 * 2 1 3 28 28 H 1.09000 * 109.47072 * 59.99745 * 3 2 1 29 29 H 1.09002 * 109.47345 * 300.00087 * 3 2 1 30 30 H 0.96996 * 120.00336 * 359.97438 * 7 5 4 31 31 H 1.09007 * 109.47068 * 59.99799 * 8 7 5 32 32 H 1.08996 * 109.47220 * 300.00144 * 8 7 5 33 33 H 1.08000 * 119.87692 * 359.96552 * 10 9 8 34 34 H 1.08002 * 120.12182 * 180.27799 * 11 10 9 35 35 H 0.96994 * 119.99970 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.12698 * 179.97438 * 21 12 11 37 37 H 1.08000 * 119.87918 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4921 1.4424 -0.0006 5 6 4.1034 2.6421 -0.0012 6 8 3.4416 3.6611 -0.0017 7 7 5.4493 2.7125 -0.0013 8 6 6.1144 4.0178 -0.0014 9 6 7.6084 3.8204 -0.0008 10 6 8.2907 3.7362 1.2030 11 6 9.6542 3.5502 1.2155 12 6 10.3573 3.4575 0.0001 13 6 11.7592 3.2731 0.0006 14 1 12.3453 3.5857 -0.8510 15 6 12.3873 2.6856 1.1046 16 7 11.6845 1.9985 1.9680 17 14 14.2292 2.8826 1.3455 18 1 14.4953 4.0987 2.1550 19 1 14.7664 1.6912 2.0507 20 1 14.8902 3.0144 0.0223 21 6 9.6551 3.5500 -1.2157 22 6 8.2907 3.7294 -1.2043 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 5.9775 1.8990 -0.0005 31 1 5.8215 4.5749 0.8886 32 1 5.8215 4.5748 -0.8913 33 1 7.7496 3.8128 2.1346 34 1 10.1832 3.4804 2.1545 35 1 12.1199 1.5910 2.7330 36 1 10.1848 3.4806 -2.1543 37 1 7.7495 3.8004 -2.1362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859201263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:55 Heat of formation + Delta-G solvation = -101.450930 kcal Electronic energy + Delta-G solvation = -18605.695001 eV Core-core repulsion = 15539.215036 eV Total energy + Delta-G solvation = -3066.479965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48431 -39.61518 -37.98933 -36.33140 -35.20669 -34.68519 -32.09969 -31.17980 -28.85948 -27.42171 -25.41694 -22.91839 -22.61373 -22.35059 -21.83942 -19.79350 -19.24403 -17.88469 -17.81112 -17.21191 -16.34563 -16.06928 -15.69148 -15.48057 -15.45563 -14.92731 -14.22545 -14.17098 -13.82880 -13.55046 -13.49742 -13.39191 -13.05430 -12.84384 -12.73294 -12.49652 -12.11686 -12.10033 -12.08081 -11.77878 -11.49250 -11.45397 -11.29211 -11.04772 -10.18865 -9.41121 -9.30701 -8.67854 -6.38067 0.71455 1.13561 1.29389 1.39578 1.51921 1.58531 1.73192 2.19736 2.68492 3.30547 3.74204 3.93096 3.95897 4.11820 4.29531 4.30112 4.47179 4.51068 4.53766 4.64925 4.72391 4.78593 5.04573 5.09844 5.13941 5.17391 5.20671 5.31245 5.35536 5.42347 5.51097 5.67952 5.89749 6.08168 6.18693 6.35157 6.44828 6.67165 6.90872 6.99634 7.28601 8.28485 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038525 B = 0.003203 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.626331 B = 8738.557877 C = 9080.653222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.078 3.922 4 O -0.376 6.376 5 C 0.643 3.357 6 O -0.611 6.611 7 N -0.694 5.694 8 C 0.210 3.790 9 C -0.232 4.232 10 C -0.079 4.079 11 C -0.194 4.194 12 C 0.087 3.913 13 C -0.494 4.494 14 H 0.077 0.923 15 C 0.036 3.964 16 N -0.818 5.818 17 Si 0.982 3.018 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.258 1.258 21 C -0.244 4.244 22 C -0.064 4.064 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.412 0.588 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.290 0.710 36 H 0.099 0.901 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -3.808 -1.472 13.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.004 3.996 4 O -0.290 6.290 5 C 0.396 3.604 6 O -0.503 6.503 7 N -0.352 5.352 8 C 0.089 3.911 9 C -0.234 4.234 10 C -0.098 4.098 11 C -0.213 4.213 12 C 0.084 3.916 13 C -0.523 4.523 14 H 0.096 0.904 15 C -0.180 4.180 16 N -0.443 5.443 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.182 1.182 21 C -0.264 4.264 22 C -0.083 4.083 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.289 -3.497 -1.266 13.799 hybrid contribution 1.133 -0.222 0.247 1.181 sum -12.156 -3.718 -1.018 12.752 Atomic orbital electron populations 1.21684 0.92452 1.03488 1.02681 1.21559 0.97306 0.92845 1.03981 1.23314 0.73541 1.00162 1.02600 1.86260 1.25387 1.30498 1.86855 1.18328 0.83792 0.82055 0.76209 1.90931 1.65433 1.35941 1.58002 1.45258 1.02176 1.11577 1.76201 1.19837 0.87642 0.81926 1.01694 1.19134 0.93199 1.17865 0.93165 1.20779 0.93992 0.98331 0.96702 1.21274 0.93974 1.08006 0.98058 1.18027 0.93854 0.87698 0.91972 1.19919 0.93054 1.36306 1.03053 0.90450 1.26771 1.05614 0.91624 0.94002 1.69863 1.40464 1.22653 1.11320 0.85200 0.76050 0.78918 0.79570 1.18743 1.19241 1.18190 1.21172 0.94486 1.14011 0.96729 1.20709 0.93632 0.97167 0.96763 0.90279 0.92033 0.91951 0.90524 0.90637 0.91474 0.91351 0.75225 0.91754 0.91216 0.87574 0.88040 0.89965 0.88253 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.89 6.31 30.59 0.19 -1.70 16 3 C 0.08 1.74 5.47 71.98 0.39 2.14 16 4 O -0.38 -10.82 10.27 -55.54 -0.57 -11.39 16 5 C 0.64 21.46 8.75 129.79 1.14 22.59 16 6 O -0.61 -23.35 16.13 19.83 0.32 -23.03 16 7 N -0.69 -22.44 5.55 -594.61 -3.30 -25.74 16 8 C 0.21 7.15 5.79 85.63 0.50 7.64 16 9 C -0.23 -9.16 5.27 -19.67 -0.10 -9.27 16 10 C -0.08 -3.46 9.67 22.22 0.21 -3.25 16 11 C -0.19 -9.79 8.70 22.73 0.20 -9.60 16 12 C 0.09 4.54 5.57 -21.29 -0.12 4.42 16 13 C -0.49 -25.87 9.05 23.46 0.21 -25.65 16 14 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 15 C 0.04 1.75 5.14 85.26 0.44 2.19 16 16 N -0.82 -41.43 10.95 21.83 0.24 -41.19 16 17 Si 0.98 37.05 29.60 68.60 2.03 39.08 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 21 C -0.24 -11.44 9.80 22.73 0.22 -11.22 16 22 C -0.06 -2.62 9.67 22.22 0.21 -2.40 16 23 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.41 12.74 8.57 -92.71 -0.79 11.95 16 31 H 0.06 2.19 8.08 -2.38 -0.02 2.17 16 32 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 33 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 34 H 0.10 5.41 6.16 -2.91 -0.02 5.39 16 35 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 36 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -59.07 321.18 3.20 -55.87 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.27 Total: 31.46 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.21 Total: -25.05 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -3.06 Total: -66.93 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.25 Total: -34.42 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -59.07 3.20 -55.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859201263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.584 kcal (2) G-P(sol) polarization free energy of solvation -59.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds