Wall clock time and date at job start Mon Mar 30 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00220 * 2 1 4 4 O 1.20833 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00333 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47441 * 59.99875 * 5 3 2 7 7 C 1.53001 * 109.47147 * 300.00145 * 5 3 2 8 8 N 1.46502 * 109.47683 * 180.02562 * 5 3 2 9 9 C 1.39669 * 120.00681 * 205.00135 * 8 5 3 10 10 C 1.38905 * 120.07711 * 179.97438 * 9 8 5 11 11 C 1.38102 * 119.92398 * 179.72013 * 10 9 8 12 12 C 1.38284 * 120.07730 * 0.28542 * 11 10 9 13 13 C 1.50702 * 119.92910 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47375 * 89.99517 * 13 12 11 15 15 H 1.07992 * 119.99685 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99882 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00264 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99727 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47327 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47127 * 120.00232 * 18 16 14 21 21 H 1.48508 * 109.46995 * 240.00268 * 18 16 14 22 22 C 1.38288 * 120.14784 * 0.02562 * 12 11 10 23 23 C 1.38104 * 120.07459 * 0.02562 * 22 12 11 24 24 H 1.09003 * 109.47602 * 59.99772 * 1 2 3 25 25 H 1.08995 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46933 * 300.00115 * 1 2 3 27 27 H 1.09000 * 109.47198 * 60.00003 * 7 5 3 28 28 H 1.09004 * 109.47565 * 180.02562 * 7 5 3 29 29 H 1.09007 * 109.47026 * 299.99488 * 7 5 3 30 30 H 0.97008 * 119.99236 * 24.99646 * 8 5 3 31 31 H 1.08002 * 120.04044 * 0.02562 * 10 9 8 32 32 H 1.08000 * 119.96256 * 180.29943 * 11 10 9 33 33 H 1.08998 * 109.46900 * 209.99776 * 13 12 11 34 34 H 1.09005 * 109.46585 * 329.99345 * 13 12 11 35 35 H 0.96990 * 119.99719 * 179.97438 * 17 16 14 36 36 H 1.08007 * 119.96217 * 179.97438 * 22 12 11 37 37 H 1.07998 * 120.03659 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5810 1.2483 8 7 3.9817 2.6797 0.0002 9 6 5.2308 3.0390 -0.5113 10 6 5.6260 4.3706 -0.5118 11 6 6.8640 4.7216 -1.0130 12 6 7.7076 3.7499 -1.5194 13 6 9.0576 4.1367 -2.0661 14 6 10.0797 4.0907 -0.9595 15 1 9.7815 3.8091 0.0395 16 6 11.3955 4.4071 -1.2229 17 7 11.7587 4.7496 -2.4396 18 14 12.6625 4.3494 0.1486 19 1 12.0035 3.9387 1.4144 20 1 13.7232 3.3698 -0.1983 21 1 13.2679 5.6946 0.3202 22 6 7.3146 2.4241 -1.5263 23 6 6.0775 2.0663 -1.0276 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.8048 -0.4642 1.2482 28 1 5.2023 0.6385 1.2482 29 1 3.7245 1.0750 2.1386 30 1 3.3892 3.3605 0.3559 31 1 4.9678 5.1301 -0.1162 32 1 7.1739 5.7562 -1.0093 33 1 9.3437 3.4401 -2.8541 34 1 9.0087 5.1465 -2.4738 35 1 12.6843 4.9726 -2.6247 36 1 7.9757 1.6676 -1.9230 37 1 5.7711 1.0307 -1.0337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905853579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:36 Heat of formation + Delta-G solvation = -65.189807 kcal Electronic energy + Delta-G solvation = -18921.768361 eV Core-core repulsion = 15856.860796 eV Total energy + Delta-G solvation = -3064.907565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.91735 -38.95399 -37.02761 -35.84253 -33.21784 -31.71434 -30.20240 -29.42259 -28.03881 -26.25729 -24.50858 -22.78761 -22.37792 -20.80551 -19.87235 -18.23314 -17.39072 -16.78696 -16.39551 -16.19024 -15.36363 -14.81320 -14.42939 -14.12459 -13.88604 -13.62930 -13.23700 -12.90824 -12.77667 -12.65302 -12.41637 -12.32180 -12.07437 -11.71822 -11.24272 -11.19927 -11.16292 -10.67512 -10.66241 -10.50247 -10.10903 -9.85230 -9.42468 -9.06470 -8.37237 -8.25247 -6.84251 -5.97210 -4.01504 1.84310 2.10628 2.18449 2.37080 3.32486 3.40076 3.45333 3.54824 4.35985 4.43998 4.63369 4.74368 4.77375 4.80905 4.88467 5.15098 5.35725 5.40847 5.46889 5.55140 5.56706 5.90927 6.01238 6.03913 6.10529 6.30668 6.37899 6.70208 6.81486 7.27669 7.30192 7.31741 7.40208 7.61269 7.79328 7.97660 7.98507 7.99410 8.41407 9.04744 9.62106 11.11442 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043832 B = 0.003424 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.653643 B = 8174.467290 C = 8371.854909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.459 3.541 4 O -0.502 6.502 5 C 0.167 3.833 6 H 0.116 0.884 7 C -0.165 4.165 8 N -0.743 5.743 9 C 0.182 3.818 10 C -0.186 4.186 11 C -0.079 4.079 12 C -0.080 4.080 13 C 0.052 3.948 14 C -0.507 4.507 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.080 4.080 23 C -0.197 4.197 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.403 0.597 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.117 0.883 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.807 -9.673 5.072 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.301 3.699 4 O -0.389 6.389 5 C 0.058 3.942 6 H 0.133 0.867 7 C -0.223 4.223 8 N -0.379 5.379 9 C 0.083 3.917 10 C -0.208 4.208 11 C -0.098 4.098 12 C -0.082 4.082 13 C 0.015 3.985 14 C -0.546 4.546 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.099 4.099 23 C -0.219 4.219 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.239 0.761 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.905 -9.512 4.945 22.608 hybrid contribution 0.268 0.326 0.861 0.959 sum -19.637 -9.186 5.805 22.443 Atomic orbital electron populations 1.23298 0.76088 1.03842 1.02655 1.86501 1.23576 1.33025 1.83990 1.24023 0.92217 0.81559 0.72089 1.90664 1.66895 1.36397 1.44962 1.20192 0.85713 0.86288 1.01958 0.86661 1.22266 1.03357 1.00462 0.96261 1.44193 1.17609 1.05152 1.70989 1.17516 0.84991 0.93407 0.95754 1.20466 0.98552 0.93516 1.08300 1.20849 0.92388 0.99582 0.96952 1.20494 0.97508 0.92420 0.97773 1.18267 0.86979 0.97198 0.96059 1.21168 0.92411 1.45589 0.95414 0.92471 1.25024 0.98537 0.95395 0.95532 1.69971 1.17496 1.46663 1.19408 0.86517 0.81428 0.77611 0.82382 1.19693 1.21023 1.21034 1.20851 0.94464 0.96360 0.98205 1.20550 0.96098 0.97516 1.07697 0.91795 0.87875 0.91837 0.90686 0.89967 0.91953 0.76060 0.87198 0.86411 0.95621 0.95632 0.93009 0.86452 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.36 10.47 -39.26 -0.41 -3.77 16 3 C 0.46 5.18 7.32 36.00 0.26 5.44 16 4 O -0.50 -6.91 15.59 -18.76 -0.29 -7.21 16 5 C 0.17 1.82 2.78 -69.08 -0.19 1.62 16 6 H 0.12 1.18 6.47 -51.93 -0.34 0.84 16 7 C -0.16 -1.55 9.37 37.16 0.35 -1.20 16 8 N -0.74 -9.84 5.12 -53.29 -0.27 -10.11 16 9 C 0.18 2.90 6.64 -83.79 -0.56 2.34 16 10 C -0.19 -3.18 9.90 -39.38 -0.39 -3.57 16 11 C -0.08 -1.56 9.69 -39.61 -0.38 -1.95 16 12 C -0.08 -1.76 5.07 -104.59 -0.53 -2.29 16 13 C 0.05 1.35 5.10 -29.03 -0.15 1.20 16 14 C -0.51 -14.31 9.09 -34.44 -0.31 -14.63 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.08 -1.55 9.69 -39.61 -0.38 -1.93 16 23 C -0.20 -3.21 8.87 -39.38 -0.35 -3.56 16 24 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 27 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 28 H 0.08 0.85 7.76 -51.93 -0.40 0.45 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.40 5.27 7.81 -40.82 -0.32 4.95 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 33 H 0.03 0.69 8.08 -51.93 -0.42 0.28 16 34 H 0.03 0.69 8.08 -51.93 -0.42 0.28 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.12 2.20 8.06 -52.48 -0.42 1.77 16 37 H 0.11 1.49 6.15 -52.49 -0.32 1.16 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -31.75 320.11 -7.24 -38.99 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.14 Total: 2.31 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -1.67 Total: -15.72 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.46 Total: -36.07 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.70 Total: -10.97 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.75 -7.24 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905853579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.199 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds