Wall clock time and date at job start Mon Mar 30 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00220 * 2 1 4 4 O 1.20833 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00333 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47441 * 59.99875 * 5 3 2 7 7 C 1.53001 * 109.47147 * 300.00145 * 5 3 2 8 8 N 1.46502 * 109.47683 * 180.02562 * 5 3 2 9 9 C 1.39669 * 120.00681 * 205.00135 * 8 5 3 10 10 C 1.38905 * 120.07711 * 179.97438 * 9 8 5 11 11 C 1.38102 * 119.92398 * 179.72013 * 10 9 8 12 12 C 1.38284 * 120.07730 * 0.28542 * 11 10 9 13 13 C 1.50702 * 119.92910 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47375 * 89.99517 * 13 12 11 15 15 H 1.07992 * 119.99685 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99882 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00264 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99727 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47327 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47127 * 120.00232 * 18 16 14 21 21 H 1.48508 * 109.46995 * 240.00268 * 18 16 14 22 22 C 1.38288 * 120.14784 * 0.02562 * 12 11 10 23 23 C 1.38104 * 120.07459 * 0.02562 * 22 12 11 24 24 H 1.09003 * 109.47602 * 59.99772 * 1 2 3 25 25 H 1.08995 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46933 * 300.00115 * 1 2 3 27 27 H 1.09000 * 109.47198 * 60.00003 * 7 5 3 28 28 H 1.09004 * 109.47565 * 180.02562 * 7 5 3 29 29 H 1.09007 * 109.47026 * 299.99488 * 7 5 3 30 30 H 0.97008 * 119.99236 * 24.99646 * 8 5 3 31 31 H 1.08002 * 120.04044 * 0.02562 * 10 9 8 32 32 H 1.08000 * 119.96256 * 180.29943 * 11 10 9 33 33 H 1.08998 * 109.46900 * 209.99776 * 13 12 11 34 34 H 1.09005 * 109.46585 * 329.99345 * 13 12 11 35 35 H 0.96990 * 119.99719 * 179.97438 * 17 16 14 36 36 H 1.08007 * 119.96217 * 179.97438 * 22 12 11 37 37 H 1.07998 * 120.03659 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5810 1.2483 8 7 3.9817 2.6797 0.0002 9 6 5.2308 3.0390 -0.5113 10 6 5.6260 4.3706 -0.5118 11 6 6.8640 4.7216 -1.0130 12 6 7.7076 3.7499 -1.5194 13 6 9.0576 4.1367 -2.0661 14 6 10.0797 4.0907 -0.9595 15 1 9.7815 3.8091 0.0395 16 6 11.3955 4.4071 -1.2229 17 7 11.7587 4.7496 -2.4396 18 14 12.6625 4.3494 0.1486 19 1 12.0035 3.9387 1.4144 20 1 13.7232 3.3698 -0.1983 21 1 13.2679 5.6946 0.3202 22 6 7.3146 2.4241 -1.5263 23 6 6.0775 2.0663 -1.0276 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.8048 -0.4642 1.2482 28 1 5.2023 0.6385 1.2482 29 1 3.7245 1.0750 2.1386 30 1 3.3892 3.3605 0.3559 31 1 4.9678 5.1301 -0.1162 32 1 7.1739 5.7562 -1.0093 33 1 9.3437 3.4401 -2.8541 34 1 9.0087 5.1465 -2.4738 35 1 12.6843 4.9726 -2.6247 36 1 7.9757 1.6676 -1.9230 37 1 5.7711 1.0307 -1.0337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905853579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:35 Heat of formation + Delta-G solvation = -83.848803 kcal Electronic energy + Delta-G solvation = -18922.577476 eV Core-core repulsion = 15856.860796 eV Total energy + Delta-G solvation = -3065.716680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77844 -40.28690 -37.94666 -36.99476 -35.14922 -33.13764 -31.65131 -30.89238 -28.65642 -27.91453 -25.58098 -24.50976 -23.68790 -21.99580 -21.16906 -19.21775 -18.45611 -18.26168 -17.68509 -17.40182 -16.70404 -16.33644 -15.75346 -15.32990 -15.00717 -14.68878 -14.45101 -14.34550 -14.10678 -13.95009 -13.53578 -13.45729 -13.19072 -12.97349 -12.90667 -12.66630 -12.51946 -12.36314 -11.86227 -11.64719 -11.58397 -11.53378 -11.34801 -10.70898 -10.56841 -9.68301 -8.33770 -8.01235 -6.28203 0.67165 0.84655 0.99690 1.41437 1.41804 1.44906 1.55663 2.43148 2.50554 3.14711 3.14761 3.59276 3.91888 4.02325 4.14880 4.25070 4.28421 4.31891 4.51770 4.60981 4.69883 4.75430 4.78494 4.82215 5.00657 5.18653 5.20191 5.28303 5.36821 5.41554 5.54517 5.70621 5.81952 5.97196 6.23761 6.25235 6.44040 6.57133 6.78989 6.85757 7.40248 8.93951 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043832 B = 0.003424 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.653643 B = 8174.467290 C = 8371.854909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.465 3.535 4 O -0.532 6.532 5 C 0.161 3.839 6 H 0.129 0.871 7 C -0.159 4.159 8 N -0.737 5.737 9 C 0.199 3.801 10 C -0.187 4.187 11 C -0.089 4.089 12 C -0.118 4.118 13 C 0.062 3.938 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.278 1.278 22 C -0.087 4.087 23 C -0.188 4.188 24 H 0.060 0.940 25 H 0.135 0.865 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.406 0.594 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.000 1.000 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.116 0.884 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.400 -11.436 6.795 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.308 3.692 4 O -0.421 6.421 5 C 0.054 3.946 6 H 0.146 0.854 7 C -0.217 4.217 8 N -0.371 5.371 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.108 4.108 12 C -0.120 4.120 13 C 0.025 3.975 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.204 1.204 22 C -0.106 4.106 23 C -0.210 4.210 24 H 0.079 0.921 25 H 0.153 0.847 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.242 0.758 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.018 0.982 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.539 -11.309 6.681 25.228 hybrid contribution 0.568 0.800 0.324 1.033 sum -20.971 -10.509 7.005 24.480 Atomic orbital electron populations 1.23603 0.74413 1.05982 1.02561 1.86488 1.25147 1.31800 1.83376 1.23986 0.92212 0.81661 0.71330 1.90662 1.67511 1.37415 1.46526 1.20423 0.85912 0.84889 1.03383 0.85387 1.22226 1.02706 1.01611 0.95198 1.44251 1.16429 1.06626 1.69815 1.17560 0.85707 0.92890 0.94044 1.20629 0.97681 0.94885 1.07749 1.20814 0.93442 0.98916 0.97624 1.20177 0.96334 0.94331 1.01126 1.18004 0.89654 0.94846 0.95019 1.21484 0.93410 1.45479 0.95750 0.92779 1.25951 1.00789 0.94830 0.98100 1.70097 1.18193 1.47510 1.21567 0.85398 0.78523 0.77900 0.79233 1.18869 1.20144 1.20359 1.20874 0.95871 0.95164 0.98658 1.20758 0.94619 0.99336 1.06296 0.92100 0.84667 0.91798 0.88437 0.90647 0.92047 0.75758 0.84838 0.87136 0.98176 0.98499 0.92702 0.86617 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.59 10.47 -51.42 -0.54 -6.13 16 3 C 0.46 9.23 7.32 71.23 0.52 9.75 16 4 O -0.53 -13.57 15.59 21.94 0.34 -13.23 16 5 C 0.16 2.99 2.78 44.24 0.12 3.11 16 6 H 0.13 2.11 6.47 -2.39 -0.02 2.09 16 7 C -0.16 -2.44 9.37 71.98 0.67 -1.76 16 8 N -0.74 -17.43 5.12 -322.51 -1.65 -19.08 16 9 C 0.20 5.89 6.64 38.21 0.25 6.14 16 10 C -0.19 -6.16 9.90 22.40 0.22 -5.94 16 11 C -0.09 -3.59 9.69 22.25 0.22 -3.37 16 12 C -0.12 -5.32 5.07 -19.84 -0.10 -5.43 16 13 C 0.06 3.40 5.10 29.10 0.15 3.55 16 14 C -0.52 -30.49 9.09 25.60 0.23 -30.26 16 15 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 18 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C -0.09 -3.36 9.69 22.25 0.22 -3.15 16 23 C -0.19 -5.75 8.87 22.40 0.20 -5.55 16 24 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 25 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 27 H 0.10 1.08 8.11 -2.39 -0.02 1.07 16 28 H 0.07 1.31 7.76 -2.38 -0.02 1.29 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.41 9.55 7.81 -92.70 -0.72 8.83 16 31 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.00 0.00 8.08 -2.39 -0.02 -0.02 16 34 H 0.00 -0.20 8.08 -2.38 -0.02 -0.22 16 35 H 0.26 15.13 8.31 -92.72 -0.77 14.36 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.15 3.37 6.15 -2.91 -0.02 3.36 16 Total: -1.00 -70.13 320.11 5.17 -64.96 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.35 Total: 14.41 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.36 Total: -30.91 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -1.37 Total: -76.06 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.20 Total: -19.36 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.13 5.17 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905853579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.889 kcal (2) G-P(sol) polarization free energy of solvation -70.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds