Wall clock time and date at job start Mon Mar 30 2020 06:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00594 * 2 1 4 4 O 1.20831 * 119.99635 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00425 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.47117 * 299.99605 * 5 3 2 7 7 C 1.53003 * 109.47194 * 59.99651 * 5 3 2 8 8 N 1.46500 * 109.47444 * 179.97438 * 5 3 2 9 9 C 1.39676 * 120.00062 * 154.99504 * 8 5 3 10 10 C 1.38906 * 120.07171 * 179.97438 * 9 8 5 11 11 C 1.38111 * 119.92343 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47046 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46895 * 119.99964 * 18 16 14 21 21 H 1.48502 * 109.47138 * 239.99653 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47289 * 300.01172 * 1 2 3 26 26 H 1.09006 * 109.46540 * 60.00076 * 1 2 3 27 27 H 1.08996 * 109.46904 * 60.00110 * 7 5 3 28 28 H 1.09000 * 109.47122 * 180.02562 * 7 5 3 29 29 H 1.09005 * 109.46686 * 299.99722 * 7 5 3 30 30 H 0.96994 * 119.99675 * 334.99933 * 8 5 3 31 31 H 1.07999 * 120.03932 * 0.02562 * 10 9 8 32 32 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 34 34 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 35 35 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 37 37 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9558 0.7808 0.8909 7 6 4.1139 0.5808 -1.2483 8 7 3.9819 2.6796 -0.0002 9 6 5.2310 3.0387 0.5114 10 6 5.6266 4.3702 0.5110 11 6 6.8622 4.7220 1.0181 12 6 7.7074 3.7496 1.5206 13 6 9.0576 4.1364 2.0669 14 6 8.9369 4.4358 3.5388 15 1 7.9784 4.3538 4.0298 16 6 10.0502 4.8134 4.2591 17 7 11.2177 4.9119 3.6616 18 14 9.9007 5.1839 6.0839 19 1 8.4909 5.0001 6.5124 20 1 10.7758 4.2603 6.8498 21 1 10.3167 6.5862 6.3400 22 6 7.3142 2.4238 1.5277 23 6 6.0800 2.0652 1.0222 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 3.7246 1.0747 -2.1385 28 1 5.2025 0.6374 -1.2476 29 1 3.8048 -0.4645 -1.2480 30 1 3.3895 3.3603 -0.3559 31 1 4.9685 5.1297 0.1153 32 1 7.1706 5.7570 1.0177 33 1 9.7581 3.3144 1.9195 34 1 9.4208 5.0215 1.5446 35 1 12.0009 5.1779 4.1682 36 1 7.9751 1.6674 1.9246 37 1 5.7756 1.0290 1.0236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905853580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:38 Heat of formation + Delta-G solvation = -65.175755 kcal Electronic energy + Delta-G solvation = -18923.475124 eV Core-core repulsion = 15858.568168 eV Total energy + Delta-G solvation = -3064.906955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.91146 -38.95338 -37.02198 -35.84265 -33.21803 -31.71655 -30.20168 -29.42444 -28.03618 -26.25841 -24.51143 -22.78631 -22.37681 -20.80220 -19.87289 -18.23019 -17.38578 -16.78203 -16.38796 -16.19789 -15.36314 -14.81136 -14.43345 -14.11213 -13.89007 -13.63427 -13.22932 -12.91339 -12.77806 -12.65778 -12.46548 -12.32477 -11.99675 -11.77077 -11.22909 -11.19544 -11.15663 -10.67453 -10.65944 -10.50158 -10.10777 -9.86420 -9.41727 -9.06364 -8.37046 -8.25174 -6.84336 -5.97129 -4.01356 1.85087 2.10635 2.18507 2.37536 3.32738 3.40323 3.45887 3.54674 4.36171 4.44227 4.63192 4.75117 4.77539 4.81352 4.88214 5.15875 5.35823 5.39320 5.45905 5.54677 5.55839 5.89197 6.00546 6.03934 6.10348 6.30695 6.37879 6.70231 6.81490 7.27746 7.30191 7.32013 7.40511 7.61248 7.79363 7.97642 7.98636 7.99440 8.41592 9.04908 9.62282 11.11512 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034761 B = 0.003520 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.311100 B = 7952.550827 C = 8189.012641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.459 3.541 4 O -0.502 6.502 5 C 0.166 3.834 6 H 0.116 0.884 7 C -0.164 4.164 8 N -0.743 5.743 9 C 0.181 3.819 10 C -0.186 4.186 11 C -0.079 4.079 12 C -0.080 4.080 13 C 0.052 3.948 14 C -0.508 4.508 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.080 4.080 23 C -0.197 4.197 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.403 0.597 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.117 0.883 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.799 -10.276 -9.606 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.301 3.699 4 O -0.389 6.389 5 C 0.058 3.942 6 H 0.134 0.866 7 C -0.223 4.223 8 N -0.379 5.379 9 C 0.083 3.917 10 C -0.208 4.208 11 C -0.098 4.098 12 C -0.082 4.082 13 C 0.015 3.985 14 C -0.546 4.546 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.099 4.099 23 C -0.219 4.219 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.239 0.761 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.869 -10.124 -9.543 22.646 hybrid contribution -0.547 0.572 0.976 1.257 sum -18.416 -9.552 -8.567 22.445 Atomic orbital electron populations 1.23300 0.76077 1.03838 1.02665 1.86499 1.23584 1.33027 1.83998 1.24014 0.92216 0.81568 0.72113 1.90666 1.66886 1.36396 1.44926 1.20194 0.85754 0.86296 1.01949 0.86644 1.22258 1.03248 1.00484 0.96268 1.44189 1.17581 1.05156 1.71009 1.17515 0.84926 0.93410 0.95828 1.20468 0.98531 0.93501 1.08334 1.20853 0.92685 0.99397 0.96833 1.20496 0.99004 0.92289 0.96412 1.18263 0.87625 0.97138 0.95456 1.21174 0.94614 1.45456 0.93372 0.92484 1.25021 0.95351 0.95658 0.98440 1.69969 0.99266 1.48266 1.36038 0.86517 0.78165 0.77889 0.85373 1.19704 1.21013 1.21025 1.20852 0.94962 0.96481 0.97577 1.20552 0.96084 0.97509 1.07712 0.87875 0.91779 0.91844 0.91965 0.90044 0.90690 0.76062 0.87199 0.86411 0.95610 0.95631 0.93010 0.86449 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.40 10.47 -39.25 -0.41 -3.81 16 3 C 0.46 5.23 7.32 36.00 0.26 5.50 16 4 O -0.50 -7.00 15.59 -18.75 -0.29 -7.29 16 5 C 0.17 1.81 2.78 -69.08 -0.19 1.62 16 6 H 0.12 1.21 6.48 -51.92 -0.34 0.87 16 7 C -0.16 -1.47 9.36 37.16 0.35 -1.12 16 8 N -0.74 -9.84 5.12 -53.29 -0.27 -10.11 16 9 C 0.18 2.90 6.64 -83.79 -0.56 2.34 16 10 C -0.19 -3.18 9.90 -39.38 -0.39 -3.57 16 11 C -0.08 -1.56 9.69 -39.61 -0.38 -1.94 16 12 C -0.08 -1.76 5.07 -104.59 -0.53 -2.29 16 13 C 0.05 1.35 5.10 -29.04 -0.15 1.20 16 14 C -0.51 -14.38 9.09 -34.44 -0.31 -14.70 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.08 -1.55 9.69 -39.61 -0.38 -1.93 16 23 C -0.20 -3.21 8.85 -39.38 -0.35 -3.56 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.79 7.71 -51.93 -0.40 0.38 16 29 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 30 H 0.40 5.27 7.81 -40.82 -0.32 4.95 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 33 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.11 1.49 6.12 -52.49 -0.32 1.17 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -31.86 320.01 -7.24 -39.10 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.14 Total: 2.16 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.67 Total: -15.65 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.46 Total: -36.09 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.70 Total: -11.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.86 -7.24 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905853580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.073 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds