Wall clock time and date at job start Mon Mar 30 2020 06:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00594 * 2 1 4 4 O 1.20831 * 119.99635 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00425 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.47117 * 299.99605 * 5 3 2 7 7 C 1.53003 * 109.47194 * 59.99651 * 5 3 2 8 8 N 1.46500 * 109.47444 * 179.97438 * 5 3 2 9 9 C 1.39676 * 120.00062 * 154.99504 * 8 5 3 10 10 C 1.38906 * 120.07171 * 179.97438 * 9 8 5 11 11 C 1.38111 * 119.92343 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07382 * 0.28047 * 11 10 9 13 13 C 1.50698 * 119.92407 * 179.69843 * 12 11 10 14 14 C 1.50695 * 109.47077 * 90.00107 * 13 12 11 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00403 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99758 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00253 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47046 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46895 * 119.99964 * 18 16 14 21 21 H 1.48502 * 109.47138 * 239.99653 * 18 16 14 22 22 C 1.38286 * 120.14755 * 359.44532 * 12 11 10 23 23 C 1.38112 * 120.07587 * 0.55318 * 22 12 11 24 24 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47289 * 300.01172 * 1 2 3 26 26 H 1.09006 * 109.46540 * 60.00076 * 1 2 3 27 27 H 1.08996 * 109.46904 * 60.00110 * 7 5 3 28 28 H 1.09000 * 109.47122 * 180.02562 * 7 5 3 29 29 H 1.09005 * 109.46686 * 299.99722 * 7 5 3 30 30 H 0.96994 * 119.99675 * 334.99933 * 8 5 3 31 31 H 1.07999 * 120.03932 * 0.02562 * 10 9 8 32 32 H 1.08002 * 119.96028 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.46776 * 210.00059 * 13 12 11 34 34 H 1.09003 * 109.47041 * 330.00009 * 13 12 11 35 35 H 0.96990 * 120.00273 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.96005 * 180.25011 * 22 12 11 37 37 H 1.07998 * 120.03717 * 179.70130 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9558 0.7808 0.8909 7 6 4.1139 0.5808 -1.2483 8 7 3.9819 2.6796 -0.0002 9 6 5.2310 3.0387 0.5114 10 6 5.6266 4.3702 0.5110 11 6 6.8622 4.7220 1.0181 12 6 7.7074 3.7496 1.5206 13 6 9.0576 4.1364 2.0669 14 6 8.9369 4.4358 3.5388 15 1 7.9784 4.3538 4.0298 16 6 10.0502 4.8134 4.2591 17 7 11.2177 4.9119 3.6616 18 14 9.9007 5.1839 6.0839 19 1 8.4909 5.0001 6.5124 20 1 10.7758 4.2603 6.8498 21 1 10.3167 6.5862 6.3400 22 6 7.3142 2.4238 1.5277 23 6 6.0800 2.0652 1.0222 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 3.7246 1.0747 -2.1385 28 1 5.2025 0.6374 -1.2476 29 1 3.8048 -0.4645 -1.2480 30 1 3.3895 3.3603 -0.3559 31 1 4.9685 5.1297 0.1153 32 1 7.1706 5.7570 1.0177 33 1 9.7581 3.3144 1.9195 34 1 9.4208 5.0215 1.5446 35 1 12.0009 5.1779 4.1682 36 1 7.9751 1.6674 1.9246 37 1 5.7756 1.0290 1.0236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905853580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:38 Heat of formation + Delta-G solvation = -83.941012 kcal Electronic energy + Delta-G solvation = -18924.288846 eV Core-core repulsion = 15858.568168 eV Total energy + Delta-G solvation = -3065.720678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77956 -40.28636 -37.94730 -36.99598 -35.15271 -33.13684 -31.65047 -30.89176 -28.65851 -27.91422 -25.58024 -24.50952 -23.68779 -21.99549 -21.16974 -19.21848 -18.46107 -18.26266 -17.68806 -17.40386 -16.70889 -16.33785 -15.75736 -15.31251 -15.00615 -14.68654 -14.50599 -14.27495 -14.11853 -14.02506 -13.56788 -13.23066 -13.22363 -13.08614 -12.94213 -12.62905 -12.50730 -12.37910 -11.86507 -11.64189 -11.59241 -11.53624 -11.35401 -10.70715 -10.57146 -9.68191 -8.34060 -8.01523 -6.28667 0.67180 0.84527 0.99712 1.40605 1.41053 1.45031 1.54865 2.42600 2.50530 3.14101 3.14654 3.59133 3.92201 4.02814 4.15001 4.25142 4.28196 4.31547 4.51814 4.61299 4.69662 4.75820 4.78900 4.82808 5.00863 5.18836 5.20245 5.28511 5.36907 5.41356 5.54605 5.70433 5.81758 5.97273 6.23806 6.25004 6.44034 6.57050 6.79080 6.85227 7.39721 8.93304 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034761 B = 0.003520 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.311100 B = 7952.550827 C = 8189.012641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.464 3.536 4 O -0.532 6.532 5 C 0.160 3.840 6 H 0.127 0.873 7 C -0.158 4.158 8 N -0.737 5.737 9 C 0.199 3.801 10 C -0.187 4.187 11 C -0.089 4.089 12 C -0.118 4.118 13 C 0.062 3.938 14 C -0.524 4.524 15 H 0.052 0.948 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.277 1.277 22 C -0.087 4.087 23 C -0.188 4.188 24 H 0.135 0.865 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.406 0.594 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.001 0.999 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.116 0.884 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 -11.788 -9.497 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.307 3.693 4 O -0.422 6.422 5 C 0.053 3.947 6 H 0.144 0.856 7 C -0.216 4.216 8 N -0.371 5.371 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.108 4.108 12 C -0.120 4.120 13 C 0.025 3.975 14 C -0.562 4.562 15 H 0.071 0.929 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.203 1.203 22 C -0.106 4.106 23 C -0.210 4.210 24 H 0.154 0.846 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.242 0.758 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.266 -11.671 -9.454 25.225 hybrid contribution 0.037 0.955 0.844 1.275 sum -20.229 -10.716 -8.610 24.458 Atomic orbital electron populations 1.23603 0.74428 1.05979 1.02544 1.86487 1.25135 1.31809 1.83381 1.24014 0.92267 0.81657 0.71326 1.90663 1.67530 1.37432 1.46531 1.20436 0.85867 0.84910 1.03458 0.85586 1.22219 1.02799 1.01539 0.95048 1.44249 1.16396 1.06635 1.69841 1.17559 0.85645 0.92893 0.94110 1.20631 0.97664 0.94870 1.07783 1.20819 0.93721 0.98738 0.97518 1.20179 0.97786 0.94201 0.99808 1.17998 0.89905 0.94909 0.94669 1.21487 0.94512 1.45507 0.94740 0.92934 1.25934 0.94900 0.95321 1.03427 1.70091 1.00079 1.49046 1.38041 0.85410 0.78420 0.77948 0.79347 1.19061 1.20078 1.20292 1.20875 0.96350 0.95287 0.98048 1.20760 0.94603 0.99333 1.06317 0.84649 0.92204 0.91737 0.91944 0.90416 0.88501 0.75762 0.84842 0.87132 0.98096 0.98427 0.92676 0.86618 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.67 10.47 -51.40 -0.54 -6.21 16 3 C 0.46 9.34 7.32 71.23 0.52 9.86 16 4 O -0.53 -13.78 15.59 21.95 0.34 -13.44 16 5 C 0.16 2.98 2.78 44.24 0.12 3.10 16 6 H 0.13 2.14 6.48 -2.38 -0.02 2.12 16 7 C -0.16 -2.29 9.36 71.98 0.67 -1.61 16 8 N -0.74 -17.43 5.12 -322.51 -1.65 -19.08 16 9 C 0.20 5.89 6.64 38.21 0.25 6.14 16 10 C -0.19 -6.16 9.90 22.40 0.22 -5.94 16 11 C -0.09 -3.59 9.69 22.25 0.22 -3.37 16 12 C -0.12 -5.33 5.07 -19.84 -0.10 -5.43 16 13 C 0.06 3.42 5.10 29.10 0.15 3.57 16 14 C -0.52 -30.70 9.09 25.60 0.23 -30.47 16 15 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 16 C 0.00 0.10 5.46 84.65 0.46 0.57 16 17 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 18 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 C -0.09 -3.36 9.69 22.25 0.22 -3.15 16 23 C -0.19 -5.75 8.85 22.40 0.20 -5.55 16 24 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 26 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.23 7.71 -2.39 -0.02 1.21 16 29 H 0.10 1.02 8.11 -2.38 -0.02 1.00 16 30 H 0.41 9.55 7.81 -92.71 -0.72 8.83 16 31 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.00 0.04 8.09 -2.39 -0.02 0.02 16 34 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 35 H 0.26 15.14 8.31 -92.72 -0.77 14.37 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.15 3.38 6.12 -2.91 -0.02 3.36 16 Total: -1.00 -70.32 320.01 5.17 -65.15 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.35 Total: 14.08 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 4.36 Total: -30.79 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -1.37 Total: -75.98 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.20 Total: -19.65 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.32 5.17 -65.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905853580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.789 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds