Wall clock time and date at job start Mon Mar 30 2020 07:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48498 * 109.47297 * 273.05867 * 3 2 1 5 5 H 1.48509 * 109.47283 * 33.05226 * 3 2 1 6 6 H 1.48499 * 109.47400 * 153.05318 * 3 2 1 7 7 C 1.38952 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00157 * 345.53162 * 7 2 1 9 9 N 1.37098 * 119.99627 * 165.25060 * 7 2 1 10 10 C 1.34774 * 120.00530 * 312.00436 * 9 7 2 11 11 O 1.21288 * 120.00104 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00121 * 179.97438 * 10 9 7 13 13 H 1.09000 * 115.55173 * 325.72664 * 12 10 9 14 14 C 1.52999 * 117.49711 * 111.39341 * 12 10 9 15 15 C 1.52997 * 59.99980 * 107.49226 * 14 12 10 16 16 H 1.09005 * 117.49670 * 252.51283 * 15 14 12 17 17 C 1.52995 * 117.50210 * 107.49062 * 15 14 12 18 18 C 1.54262 * 110.03655 * 228.54531 * 17 15 14 19 19 C 1.54884 * 104.19799 * 217.10716 * 18 17 15 20 20 C 1.54889 * 102.75244 * 37.94000 * 19 18 17 21 21 C 1.53878 * 110.03240 * 111.37397 * 17 15 14 22 22 C 1.46501 * 119.99539 * 132.00769 * 9 7 2 23 23 C 1.53002 * 117.50075 * 9.95140 * 22 9 7 24 24 C 1.52996 * 60.00044 * 252.51317 * 23 22 9 25 25 H 0.96995 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.09008 * 117.49903 * 214.98105 * 14 12 10 27 27 H 1.08995 * 117.49877 * 359.97438 * 14 12 10 28 28 H 1.09004 * 110.01915 * 349.98648 * 17 15 14 29 29 H 1.09005 * 110.48493 * 335.78299 * 18 17 15 30 30 H 1.08995 * 110.48898 * 98.42333 * 18 17 15 31 31 H 1.09009 * 110.75576 * 279.62028 * 19 18 17 32 32 H 1.08998 * 110.75849 * 156.25651 * 19 18 17 33 33 H 1.08998 * 110.48734 * 203.38286 * 20 19 18 34 34 H 1.08994 * 110.48962 * 80.73496 * 20 19 18 35 35 H 1.08995 * 110.03307 * 238.56904 * 21 17 15 36 36 H 1.09000 * 110.03219 * 359.95629 * 21 17 15 37 37 H 1.08997 * 115.55406 * 155.66905 * 22 9 7 38 38 H 1.09004 * 117.49580 * 0.02562 * 23 22 9 39 39 H 1.08999 * 117.49890 * 145.02129 * 23 22 9 40 40 H 1.08998 * 117.49970 * 252.50939 * 24 23 22 41 41 H 1.08998 * 117.49930 * 107.49306 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4310 2.0838 -1.3980 5 1 1.4794 2.6332 0.7636 6 1 3.5765 1.4224 0.6344 7 6 2.0089 -1.2034 0.0005 8 1 1.4946 -2.1237 0.2346 9 7 3.3460 -1.2230 -0.3017 10 6 3.8009 -0.5689 -1.3887 11 8 3.0274 0.0376 -2.0994 12 6 5.2707 -0.5900 -1.7206 13 1 5.9458 -0.6031 -0.8649 14 6 5.7014 -1.3579 -2.9719 15 6 5.7245 0.1719 -2.9673 16 1 4.9599 0.6886 -3.5475 17 6 7.0913 0.8577 -2.9177 18 6 7.0955 1.9496 -1.8280 19 6 7.9508 3.0891 -2.4353 20 6 7.5389 3.0673 -3.9283 21 6 7.3733 1.5683 -4.2531 22 6 4.2803 -1.9551 0.5569 23 6 3.6856 -2.8646 1.6340 24 6 4.3547 -1.5467 2.0295 25 1 -0.4849 0.8400 0.0004 26 1 6.6601 -1.8758 -2.9396 27 1 4.9217 -1.8480 -3.5548 28 1 7.8703 0.1230 -2.7140 29 1 6.0810 2.2970 -1.6322 30 1 7.5543 1.5741 -0.9134 31 1 9.0140 2.8752 -2.3247 32 1 7.6989 4.0464 -1.9791 33 1 8.3214 3.5074 -4.5464 34 1 6.5961 3.5951 -4.0717 35 1 8.2895 1.1790 -4.6970 36 1 6.5368 1.4239 -4.9369 37 1 5.2039 -2.2796 0.0775 38 1 2.5991 -2.9185 1.7035 39 1 4.2177 -3.7878 1.8632 40 1 5.3270 -1.6030 2.5189 41 1 3.7084 -0.7334 2.3595 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593038605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:10 Heat of formation + Delta-G solvation = 12.139494 kcal Electronic energy + Delta-G solvation = -20701.006591 eV Core-core repulsion = 17775.285371 eV Total energy + Delta-G solvation = -2925.721220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.61165 -38.27378 -36.52023 -35.17737 -32.83368 -31.37320 -28.76860 -28.54414 -25.75877 -22.92478 -21.80902 -21.76114 -21.16248 -20.51678 -19.50746 -18.79958 -17.09534 -16.22833 -15.74723 -15.24396 -15.13691 -14.37817 -14.07812 -13.54624 -13.36945 -13.27107 -13.19749 -12.54740 -12.22227 -12.15920 -11.49891 -11.40007 -11.12089 -11.09143 -11.03579 -10.96485 -10.68894 -10.61477 -10.35985 -10.32358 -10.18374 -9.96231 -9.78386 -9.65311 -9.50630 -8.58650 -8.48574 -7.37567 -6.18367 -4.01036 3.25004 3.46918 3.57803 3.65384 4.15146 4.36576 4.50136 4.65056 4.66443 4.72973 4.83225 5.09336 5.19523 5.26880 5.41257 5.47594 5.52717 5.57382 5.64036 5.65919 5.70493 5.74514 5.76028 5.81341 5.82801 5.92189 5.94025 6.02536 6.12038 6.21299 6.29552 6.30616 6.37424 6.40706 6.48902 6.68336 6.74106 6.90650 7.86856 8.07240 8.80246 8.95479 9.43428 9.86251 10.87629 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.006989 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.854620 B = 4005.312844 C = 4492.179571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.091 3.909 3 Si 0.902 3.098 4 H -0.256 1.256 5 H -0.306 1.306 6 H -0.275 1.275 7 C -0.342 4.342 8 H 0.094 0.906 9 N -0.438 5.438 10 C 0.490 3.510 11 O -0.542 6.542 12 C -0.175 4.175 13 H 0.111 0.889 14 C -0.153 4.153 15 C -0.120 4.120 16 H 0.115 0.885 17 C -0.059 4.059 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.117 4.117 22 C 0.066 3.934 23 C -0.176 4.176 24 C -0.199 4.199 25 H 0.272 0.728 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.880 0.894 -2.826 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.117 4.117 3 Si 0.731 3.269 4 H -0.181 1.181 5 H -0.235 1.235 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.112 0.888 9 N -0.158 5.158 10 C 0.280 3.720 11 O -0.424 6.424 12 C -0.196 4.196 13 H 0.129 0.871 14 C -0.191 4.191 15 C -0.139 4.139 16 H 0.133 0.867 17 C -0.078 4.078 18 C -0.159 4.159 19 C -0.163 4.163 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.039 4.039 23 C -0.213 4.213 24 C -0.238 4.238 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.271 1.279 -3.197 16.632 hybrid contribution 0.312 0.709 0.296 0.829 sum 16.583 1.988 -2.902 16.952 Atomic orbital electron populations 1.69713 1.06655 1.28037 1.46176 1.25341 0.94937 0.99265 0.92178 0.86479 0.79294 0.82396 0.78703 1.18143 1.23484 1.20015 1.18721 0.81274 0.95261 1.51566 0.88822 1.43048 1.06549 1.46210 1.20000 1.19473 0.87934 0.83219 0.81389 1.90545 1.57293 1.44339 1.50230 1.22337 0.96427 1.07530 0.93349 0.87065 1.22982 1.02272 0.94330 0.99508 1.22464 0.97795 0.93468 1.00180 0.86731 1.21366 0.94744 0.96697 0.94987 1.22428 1.00658 0.95192 0.97577 1.22493 0.99392 0.98690 0.95688 1.22372 1.01111 0.96615 0.96223 1.22184 1.01413 0.94825 0.97044 1.21857 0.95023 1.00295 0.86763 1.23113 1.02131 0.93041 1.03065 1.23232 1.01506 0.99571 0.99443 0.91859 0.88716 0.88516 0.91151 0.91074 0.91843 0.91793 0.91830 0.92065 0.91613 0.92076 0.91369 0.87058 0.87293 0.89624 0.89706 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.97 13.96 55.50 0.77 -26.20 16 2 C 0.09 2.73 4.96 -17.47 -0.09 2.64 16 3 Si 0.90 24.53 24.88 -169.99 -4.23 20.30 16 4 H -0.26 -7.31 6.43 56.52 0.36 -6.95 16 5 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 6 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.34 -9.73 8.47 -14.93 -0.13 -9.85 16 8 H 0.09 2.79 7.11 -52.49 -0.37 2.42 16 9 N -0.44 -10.71 2.43 -107.73 -0.26 -10.97 16 10 C 0.49 11.86 5.62 -10.99 -0.06 11.80 16 11 O -0.54 -15.32 12.27 5.55 0.07 -15.25 16 12 C -0.17 -3.19 4.39 -91.77 -0.40 -3.59 16 13 H 0.11 1.83 7.18 -51.93 -0.37 1.45 16 14 C -0.15 -2.32 9.89 -26.73 -0.26 -2.59 16 15 C -0.12 -1.95 4.35 -90.62 -0.39 -2.34 16 16 H 0.11 2.14 7.46 -51.93 -0.39 1.75 16 17 C -0.06 -0.77 3.08 -89.50 -0.28 -1.04 16 18 C -0.12 -1.61 6.12 -25.08 -0.15 -1.76 16 19 C -0.13 -1.38 6.91 -24.74 -0.17 -1.55 16 20 C -0.13 -1.37 6.83 -25.07 -0.17 -1.54 16 21 C -0.12 -1.34 6.46 -25.61 -0.17 -1.50 16 22 C 0.07 1.28 5.82 -67.93 -0.40 0.89 16 23 C -0.18 -3.10 9.84 -26.73 -0.26 -3.36 16 24 C -0.20 -3.53 10.25 -26.73 -0.27 -3.81 16 25 H 0.27 7.94 8.31 -40.82 -0.34 7.60 16 26 H 0.09 1.15 8.07 -51.92 -0.42 0.73 16 27 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 29 H 0.07 1.14 7.85 -51.93 -0.41 0.73 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.82 7.54 -51.93 -0.39 0.43 16 37 H 0.11 1.81 6.79 -51.93 -0.35 1.46 16 38 H 0.11 2.20 6.58 -51.93 -0.34 1.85 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -32.88 323.41 -8.84 -41.71 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.86 Total: 3.15 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.20 Total: -17.62 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.51 Total: -37.17 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.07 Total: -15.25 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -4.23 Total: 20.30 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.88 -8.84 -41.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593038605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.854 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds