Wall clock time and date at job start Mon Mar 30 2020 07:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48498 * 109.47297 * 273.05867 * 3 2 1 5 5 H 1.48509 * 109.47283 * 33.05226 * 3 2 1 6 6 H 1.48499 * 109.47400 * 153.05318 * 3 2 1 7 7 C 1.38952 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00157 * 345.53162 * 7 2 1 9 9 N 1.37098 * 119.99627 * 165.25060 * 7 2 1 10 10 C 1.34774 * 120.00530 * 312.00436 * 9 7 2 11 11 O 1.21288 * 120.00104 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00121 * 179.97438 * 10 9 7 13 13 H 1.09000 * 115.55173 * 325.72664 * 12 10 9 14 14 C 1.52999 * 117.49711 * 111.39341 * 12 10 9 15 15 C 1.52997 * 59.99980 * 107.49226 * 14 12 10 16 16 H 1.09005 * 117.49670 * 252.51283 * 15 14 12 17 17 C 1.52995 * 117.50210 * 107.49062 * 15 14 12 18 18 C 1.54262 * 110.03655 * 228.54531 * 17 15 14 19 19 C 1.54884 * 104.19799 * 217.10716 * 18 17 15 20 20 C 1.54889 * 102.75244 * 37.94000 * 19 18 17 21 21 C 1.53878 * 110.03240 * 111.37397 * 17 15 14 22 22 C 1.46501 * 119.99539 * 132.00769 * 9 7 2 23 23 C 1.53002 * 117.50075 * 9.95140 * 22 9 7 24 24 C 1.52996 * 60.00044 * 252.51317 * 23 22 9 25 25 H 0.96995 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.09008 * 117.49903 * 214.98105 * 14 12 10 27 27 H 1.08995 * 117.49877 * 359.97438 * 14 12 10 28 28 H 1.09004 * 110.01915 * 349.98648 * 17 15 14 29 29 H 1.09005 * 110.48493 * 335.78299 * 18 17 15 30 30 H 1.08995 * 110.48898 * 98.42333 * 18 17 15 31 31 H 1.09009 * 110.75576 * 279.62028 * 19 18 17 32 32 H 1.08998 * 110.75849 * 156.25651 * 19 18 17 33 33 H 1.08998 * 110.48734 * 203.38286 * 20 19 18 34 34 H 1.08994 * 110.48962 * 80.73496 * 20 19 18 35 35 H 1.08995 * 110.03307 * 238.56904 * 21 17 15 36 36 H 1.09000 * 110.03219 * 359.95629 * 21 17 15 37 37 H 1.08997 * 115.55406 * 155.66905 * 22 9 7 38 38 H 1.09004 * 117.49580 * 0.02562 * 23 22 9 39 39 H 1.08999 * 117.49890 * 145.02129 * 23 22 9 40 40 H 1.08998 * 117.49970 * 252.50939 * 24 23 22 41 41 H 1.08998 * 117.49930 * 107.49306 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4310 2.0838 -1.3980 5 1 1.4794 2.6332 0.7636 6 1 3.5765 1.4224 0.6344 7 6 2.0089 -1.2034 0.0005 8 1 1.4946 -2.1237 0.2346 9 7 3.3460 -1.2230 -0.3017 10 6 3.8009 -0.5689 -1.3887 11 8 3.0274 0.0376 -2.0994 12 6 5.2707 -0.5900 -1.7206 13 1 5.9458 -0.6031 -0.8649 14 6 5.7014 -1.3579 -2.9719 15 6 5.7245 0.1719 -2.9673 16 1 4.9599 0.6886 -3.5475 17 6 7.0913 0.8577 -2.9177 18 6 7.0955 1.9496 -1.8280 19 6 7.9508 3.0891 -2.4353 20 6 7.5389 3.0673 -3.9283 21 6 7.3733 1.5683 -4.2531 22 6 4.2803 -1.9551 0.5569 23 6 3.6856 -2.8646 1.6340 24 6 4.3547 -1.5467 2.0295 25 1 -0.4849 0.8400 0.0004 26 1 6.6601 -1.8758 -2.9396 27 1 4.9217 -1.8480 -3.5548 28 1 7.8703 0.1230 -2.7140 29 1 6.0810 2.2970 -1.6322 30 1 7.5543 1.5741 -0.9134 31 1 9.0140 2.8752 -2.3247 32 1 7.6989 4.0464 -1.9791 33 1 8.3214 3.5074 -4.5464 34 1 6.5961 3.5951 -4.0717 35 1 8.2895 1.1790 -4.6970 36 1 6.5368 1.4239 -4.9369 37 1 5.2039 -2.2796 0.0775 38 1 2.5991 -2.9185 1.7035 39 1 4.2177 -3.7878 1.8632 40 1 5.3270 -1.6030 2.5189 41 1 3.7084 -0.7334 2.3595 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593038605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:10 Heat of formation + Delta-G solvation = -7.385127 kcal Electronic energy + Delta-G solvation = -20701.853242 eV Core-core repulsion = 17775.285371 eV Total energy + Delta-G solvation = -2926.567871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23995 -39.53870 -38.08460 -36.54499 -34.88949 -33.39790 -29.77722 -29.49855 -27.68971 -24.62806 -23.19122 -22.95445 -22.75043 -21.49238 -20.85962 -20.32697 -18.88807 -17.95238 -17.28874 -16.72981 -16.34545 -15.95209 -15.71531 -15.19982 -14.98980 -14.73077 -14.63404 -14.20465 -13.75966 -13.40577 -13.33088 -12.83449 -12.55660 -12.45691 -12.22352 -12.19602 -12.09776 -11.93953 -11.88017 -11.65947 -11.49866 -11.37260 -11.26730 -11.08116 -10.85671 -10.73682 -10.40467 -9.32678 -8.48274 -6.28440 1.12088 1.25519 1.38220 1.76150 2.29999 2.57466 2.87746 2.94486 3.26586 3.58072 3.69945 3.80404 3.95316 3.99921 4.10596 4.14465 4.21046 4.31467 4.34337 4.54465 4.60851 4.63386 4.74855 4.82615 4.85412 4.88385 4.88495 4.98685 5.02580 5.08544 5.10456 5.23891 5.25228 5.36668 5.38053 5.46491 5.51000 5.58499 5.66761 5.86461 6.73811 6.89075 7.30165 7.87185 8.61341 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.006989 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.854620 B = 4005.312844 C = 4492.179571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.042 3.958 3 Si 0.952 3.048 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.258 1.258 7 C -0.330 4.330 8 H 0.067 0.933 9 N -0.455 5.455 10 C 0.481 3.519 11 O -0.597 6.597 12 C -0.189 4.189 13 H 0.141 0.859 14 C -0.125 4.125 15 C -0.119 4.119 16 H 0.075 0.925 17 C -0.052 4.052 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.117 4.117 22 C 0.046 3.954 23 C -0.169 4.169 24 C -0.187 4.187 25 H 0.272 0.728 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.155 0.845 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.861 -0.057 -2.477 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.161 4.161 3 Si 0.782 3.218 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.182 1.182 7 C -0.458 4.458 8 H 0.085 0.915 9 N -0.175 5.175 10 C 0.273 3.727 11 O -0.482 6.482 12 C -0.210 4.210 13 H 0.159 0.841 14 C -0.162 4.162 15 C -0.138 4.138 16 H 0.094 0.906 17 C -0.071 4.071 18 C -0.164 4.164 19 C -0.157 4.157 20 C -0.166 4.166 21 C -0.154 4.154 22 C -0.058 4.058 23 C -0.207 4.207 24 C -0.226 4.226 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.172 0.828 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.281 0.306 -2.809 21.468 hybrid contribution -1.256 0.905 0.132 1.554 sum 20.025 1.211 -2.677 20.240 Atomic orbital electron populations 1.69796 1.07783 1.28483 1.49253 1.25951 0.95460 1.01822 0.92875 0.85661 0.79249 0.79933 0.76986 1.21177 1.22895 1.18162 1.18608 0.83697 0.93860 1.49607 0.91495 1.43271 1.05924 1.46905 1.21377 1.20557 0.90502 0.81329 0.80352 1.90511 1.59499 1.46393 1.51801 1.22245 0.92282 1.10929 0.95552 0.84120 1.23136 1.03578 0.93626 0.95901 1.22489 0.98711 0.94556 0.98080 0.90631 1.21419 0.93093 0.96998 0.95551 1.22453 0.98975 0.96365 0.98651 1.22496 1.00274 0.97790 0.95165 1.22401 1.00937 0.96407 0.96831 1.22203 1.02043 0.95016 0.96181 1.22274 0.95564 1.00917 0.87051 1.23147 1.00541 0.95023 1.01973 1.23287 1.03018 0.98285 0.97976 0.91891 0.83843 0.90312 0.88045 0.95050 0.90505 0.89356 0.92007 0.89891 0.93599 0.89422 0.92904 0.82822 0.90991 0.85143 0.84954 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.64 13.96 21.66 0.30 -59.34 16 2 C 0.04 2.64 4.96 84.93 0.42 3.06 16 3 Si 0.95 53.00 24.88 68.60 1.71 54.71 16 4 H -0.28 -17.04 6.43 99.48 0.64 -16.40 16 5 H -0.30 -16.12 7.11 99.48 0.71 -15.41 16 6 H -0.26 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.33 -19.49 8.47 84.04 0.71 -18.78 16 8 H 0.07 4.22 7.11 -2.91 -0.02 4.20 16 9 N -0.45 -22.24 2.43 -613.14 -1.49 -23.73 16 10 C 0.48 23.35 5.62 87.66 0.49 23.85 16 11 O -0.60 -35.11 12.27 -3.06 -0.04 -35.15 16 12 C -0.19 -6.44 4.39 -11.54 -0.05 -6.50 16 13 H 0.14 3.96 7.18 -2.39 -0.02 3.94 16 14 C -0.13 -3.37 9.89 30.59 0.30 -3.07 16 15 C -0.12 -3.67 4.35 -10.80 -0.05 -3.72 16 16 H 0.08 2.93 7.46 -2.38 -0.02 2.91 16 17 C -0.05 -1.17 3.08 -10.07 -0.03 -1.20 16 18 C -0.13 -3.06 6.12 31.67 0.19 -2.87 16 19 C -0.12 -2.29 6.91 31.88 0.22 -2.07 16 20 C -0.13 -2.51 6.83 31.67 0.22 -2.29 16 21 C -0.12 -2.33 6.46 31.32 0.20 -2.13 16 22 C 0.05 1.65 5.82 44.99 0.26 1.91 16 23 C -0.17 -5.58 9.84 30.59 0.30 -5.28 16 24 C -0.19 -6.09 10.25 30.59 0.31 -5.77 16 25 H 0.27 16.77 8.31 -92.71 -0.77 16.00 16 26 H 0.14 2.53 8.07 -2.38 -0.02 2.51 16 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.10 1.71 7.94 -2.38 -0.02 1.69 16 29 H 0.03 0.99 7.85 -2.38 -0.02 0.97 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.21 7.54 -2.39 -0.02 1.19 16 37 H 0.15 4.19 6.79 -2.39 -0.02 4.17 16 38 H 0.07 2.93 6.58 -2.39 -0.02 2.92 16 39 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -78.49 323.41 4.92 -73.57 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.93 Total: 14.78 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.51 Total: -24.85 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.18 Total: -83.06 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.04 Total: -35.15 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 1.71 Total: 54.71 kcal Total: -78.49 4.92 -73.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593038605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.186 kcal (2) G-P(sol) polarization free energy of solvation -78.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds